GENSCAN 1.0	Date run:  5-Nov-116	Time: 03:31:17

Sequence gi568815586r:10706054_10906980 : 200927 bp : 37.30% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.13 Intr -    195    124   72  0  0   56  102    41 0.030   0.98
 1.12 Intr -   4061   3855  207  2  0   59   98   300 0.903  26.45
 1.11 Intr -   7280   7158  123  2  0  103   63   295 0.998  28.36
 1.10 Intr -   9730   9641   90  1  0   99  100   135 0.998  15.07
 1.09 Intr -  11655  11590   66  0  0   61   55    90 0.691   1.18
 1.08 Intr -  16508  16014  495  2  0   56   43   406 0.669  25.16
 1.07 Intr -  16650  16602   49  2  1   49   99    42 0.390  -0.84
 1.06 Intr -  16898  16797  102  1  0   60  109    94 0.104   7.07
 1.05 Intr -  25106  24965  142  0  1  100   91    34 0.018   3.39
 1.04 Intr -  27019  26918  102  2  0  112   58    64 0.122   5.03
 1.03 Intr -  34217  34178   40  2  1   57   87    23 0.036  -4.02
 1.02 Intr -  35271  35128  144  0  0   73   69    82 0.081   4.36
 1.01 Init -  39274  38795  480  1  0   78   86   147 0.055   8.91
 1.00 Prom -  40922  40883   40                              -6.15

 2.12 PlyA -  42468  42463    6                               1.05
 2.11 Term -  44110  43934  177  1  0   41   32   167 0.008   3.10
 2.10 Intr -  49653  49128  526  2  1   43   39   280 0.000  10.62
 2.09 Intr -  58225  58084  142  2  1   85   77    53 0.100   2.39
 2.08 Intr -  58666  58378  289  1  1   21   31   215 0.020   5.00
 2.07 Intr -  68354  68241  114  2  0   79   89    89 0.013   7.82
 2.06 Intr -  85842  85312  531  0  0   51   39   218 0.010   5.40
 2.05 Intr -  86396  86234  163  1  1    2   38   198 0.001   5.26
 2.04 Intr -  92184  92070  115  1  1   33   31   101 0.002  -2.51
 2.03 Intr - 103406 103224  183  0  0  108  -11   164 0.020   7.34
 2.02 Intr - 110094 109941  154  0  1   74   24   115 0.586   2.42
 2.01 Init - 110939 110787  153  2  0   67   81    55 0.361   2.74
 2.00 Prom - 130323 130284   40                              -0.35

 3.04 PlyA - 130411 130406    6                               1.05
 3.03 Term - 141314 141010  305  0  2   51   33   238 0.401   8.95
 3.02 Intr - 142354 142319   36  2  0  111   99    23 0.748   3.02
 3.01 Init - 143384 143321   64  2  1   66   53   102 0.855   4.18
 3.00 Prom - 143456 143417   40                              -5.35

 4.00 Prom + 146099 146138   40                              -6.25
 4.01 Sngl + 147389 147886  498  1  0   90   55   318 0.879  24.49
 4.02 PlyA + 151209 151214    6                               1.05

 5.00 Prom + 153213 153252   40                              -3.45
 5.01 Init + 157920 158012   93  2  0   95   65    46 0.194   3.43
 5.02 Term + 172062 172217  156  2  0   67   38   126 0.344   2.45
 5.03 PlyA + 172743 172748    6                               1.05

 6.05 PlyA - 173019 173014    6                               1.05
 6.04 Term - 176645 176182  464  0  2   84   33   577 0.981  46.03
 6.03 Intr - 178222 178101  122  0  2   51  116    95 0.127   7.82
 6.02 Intr - 185872 185817   56  1  2  115   32    35 0.029  -2.54
 6.01 Intr - 194224 194161   64  0  1   66  113    82 0.173   6.30

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  49619  48966  654  2  0   91   36   293 0.876  20.32
S.002 Term +  71265  71360   96  2  0  108   38   113 0.970   5.29
S.003 Sngl -  86368  86075  294  1  0   51   38   265 0.835  13.25
S.004 Term - 103406 103084  323  0  2  108   44   161 0.810   7.70
S.005 Init - 178164 178101   64  0  1   63  116    72 0.849   8.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:10706054_10906980|GENSCAN_predicted_peptide_1|704_aa
MPSLTTPIKIVLEVLARAIRQEKEIKSIQLGKEEVKLSLFTDGMIIYLENPTVSAQNLLK
LISNFGKVSGYKINVQKSQALLYTSNRQTESQITSKLPFTIATKRIKYLGIQLTRDVKDL
FKENYKPMLNKIKEDTNKWKNIPDSWIGRINIVKMHILPKLGPLQVLQRLVRNQKFTISN
VKRSFEKLGEAVEKRYSVNTVLKKESSQRSDNKQAKLTRVVVPSNDWTQLEARAKKPVEA
VQSGSFSGAQSREKNGNERDPLITKFTLNRRWSPCGAKGISNPNPAFSRQTSNSNSTVAY
FCRKPRWGRGPRSHGHRGRRLFSHRRRQRRRGEKSSRGLRVPSAGRLPCRRSQTGTVADS
RGGKCLRLEKKGEAVWERGPWVGMDVGEGPTRGPGALGSLLGIWERRAFPLGKRRALEGD
GEGKIEKLLARKGQVSVPDALPTWAWERRHAPVGHMPAKRCCNRLRETWVLVPRLPPPLC
AHGCKQPFSVHQWLHASLFPDCGNARGVAAEKTLSEVGVLVKAPLSEQLSIEVNSAEKQI
TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY
HVGQTFDRRSRVLPHPNRIQSYPWSLPYPLPHQQLLKPLNGQIK

>gi568815586r:10706054_10906980|GENSCAN_predicted_CDS_1|2112_bp
atgccctctctcaccactcctattaaaatagtgttggaagttctggccagggcaatcagg
caagagaaagaaataaagagtattcaattaggaaaagaggaagtcaaattgtccctgttt
acagatggcatgattatatacttagaaaaccccactgtctcagcccaaaatctccttaag
ctgataagcaacttcggcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagca
ttactatacaccagtaacagacaaacagagagccaaatcacgagtaaactcccattcaca
attgctacaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctc
ttcaaggagaactacaaaccaatgctcaacaaaataaaagaggacacaaacaaatggaag
aacattccagattcatggataggaagaatcaatattgtgaaaatgcacatactgcccaag
ttgggccctcttcaggtgctgcagagattggtgagaaaccagaagttcacaatcagtaat
gtcaaaagaagctttgagaagctgggagaggctgtggaaaaaaggtacagtgtgaacaca
gtcttgaaaaaagaaagctctcagaggagtgataacaaacaagccaagttaactagagtt
gtagtgccctccaatgattggacccagctggaagccagagcaaagaagcctgtagaagct
gttcaaagtggttcattctctggggcacagagcagggagaaaaatggaaatgagagggat
cctctgattaccaaatttactctcaacaggcgttggtccccatgtggagcaaaaggcatc
agtaaccccaatccagctttttctcgacagacttctaactcaaacagcactgtggcctat
ttctgcaggaaaccccggtggggacgcggcccccgcagccacgggcaccgcggccgccgc
ctctttagccaccgccgccggcagcgaagacgcggagaaaaaagttctcggggtctccgg
gtccccagcgctggccgcctcccttgccggcgctcccagacgggcactgttgcggattcg
cgtggtggaaaatgcctgcgtttggagaagaaaggagaggcagtctgggagaggggacct
tgggtagggatggatgtaggggaaggaccgacacgtgggcctggcgctttggggtccttg
cttgggatctgggaaaggagagcatttcctttggggaagaggagggcgctagaaggagac
ggggagggaaagatagaaaagcttcttgccaggaagggtcaggtgtctgtccctgacgcc
cttcccacatgggcatgggaaagacgccatgctcctgttggccacatgccagcaaagaga
tgttgcaatcgtctccgggaaacttgggtcttagtcccacgtcttcctccccctctctgt
gcccacggctgcaaacagccattcagtgtccaccaatggctacacgcttccctcttcccg
gactgtgggaacgcacgtggtgtagcagctgaaaaaactttgtcggaagtgggggtattg
gttaaagctcctctgtcagagcagctctcaattgaagtaaatagcgcagagaagcagata
actgccatcaagaagaataacccacggaaatatctgcgcagtgtaggagatggagaaact
gtagagtttgatgtggttgaaggagagaagggtgcagaagctgccaatgtgactggcccg
gatggagttcctgtggaagggagtcgttacgctgcagatcggcgccgttacagacgtggc
tactatggaaggcgccgtggccctccccggaattacgctggggaggaggaggaggaaggg
agcggcagcagtgaaggatttgacccccctgccactgataggcagttctctggggcccgg
aatcagctgcgccgcccccagtatcgccctcagtaccggcagcggcggttcccgccttac
cacgtgggacagacctttgaccgtcgctcacgggtcttaccccatcccaacagaatacag
agttacccctggtctctcccttacccgttacctcaccaacaacttctaaagccattaaat
gggcagatcaag

>gi568815586r:10706054_10906980|GENSCAN_predicted_peptide_2|848_aa
MEFHDATLSCFWVPVVLEPEPTELGVVALGQIWMQPKVQPGVIMTPREAPKETGCSQGAA
CPSCIPQVLRILHFQAEEAGLEHPSISSAFSSHQTLLTRAWDFRHTKQIRLHATGFRDPS
TEAHMRAIKAVIIFLLLLIVYYPVFLVMTSSALIPQGKLVLMIELRVTKAFESRTSSTLM
EAMVSISLDAVRTSDTVLYGLRGLEYSEDKKMWESLELPRDWLNGFDQNADSDMNNKVRV
EVVSDEDEELLGTEVKPRDLVPCIPAAPAMAKRGQGTAQVMASGGTSPKFWQLPCGVESA
GAQKSIIEVWEPPPRFQRMCGNAWMSRQRCAAGAGPSWRTSAKAVWKGNVGLETSHRVPT
WALPSGAVRRGSPSSTPQNGRSTNNLHHVPGKTADTQHQPVKAVKREVVPCKPTEAELPR
AVAAHLLHQHNLDNPDFVQGNNVPSGSQVGAFRNSLLADLTVTALELPNYSVRSHGPGSR
LAHIDSDSRSAQLQTGSHDTSVQASPWNPTLQIYLNKPRVQNCYSTSQYQADLMDPSSRT
TATDPGSRTDFVDPGPKTQAYYYIMDPGARPAQILIQTPNQSLQRFCYMAHTESLDELTG
EGFSLLKPVYKEWKRDLVPCIPATPAMTKRGHGTARAIASEGGSPKPWQLPCGIEPAGPQ
KSIIKVWEPPPRFQRMYGNSWMSRQKLAAGSGPSWRTSARAVWKGNVRLEPPHRVPTGTP
PSGAVRIGPPSSRPQNGRSTDSLLHVPGKVTDTQHQPMKAARNGTIPCKATGAELPKAMG
AHFLHQHDLDKLAKRVKAVHKAMTVMAMIPTGEPTVIQTFGNPHSNAKETLPFSSSFYRK
RTRKGEIK

>gi568815586r:10706054_10906980|GENSCAN_predicted_CDS_2|2547_bp
atggaattccatgatgccactctttcctgcttctgggtccctgtagtcttagagccagag
cccacagagctgggggtggtggcattggggcagatctggatgcagcccaaggtacagcca
ggagtgattatgactcctagagaagctcctaaggagactggatgttctcaaggagcagcc
tgtccatcttgcatcccccaggttctccggattctccatttccaagcagaagaagcagga
ctggagcacccttccatatcatcagccttctcctcgcaccagaccttactcaccagggcc
tgggactttagacacaccaagcagattcgactgcatgctacagggttcagagaccccagt
acagaggcccacatgagggccataaaggcagtgatcatctttctgctcctcctcatcgtg
tactacccagtctttcttgttatgacctctagcgctctgattcctcagggaaaattagtg
ttgatgattgagctcagggtcaccaaagcctttgagagcaggactagcagcaccttgatg
gaagccatggtatccatctcccttgatgctgtaagaacctcagacacagtcctttatggg
ttgagaggtttggagtactcagaagacaaaaagatgtgggagagtttggaacttcctaga
gactggttgaatggctttgaccaaaatgctgatagcgatatgaacaataaggtccgggtt
gaggtggtctcagatgaagatgaggaacttttgggaactgaagtaaagcctagggactta
gtgccctgcatcccagctgctccagccatggctaaaaggggccaaggtacagctcaggtc
atggcttcagggggtacaagccccaagttttggcagcttccatgtggtgttgagtctgca
ggtgcacagaagtcaataattgaggtttgggaacctccacctagatttcagagaatgtgt
ggaaatgcgtggatgtccaggcagaggtgtgctgcaggggctgggccctcatggagaact
tctgctaaggcagtgtggaagggaaatgtggggttggagacctcacacagagtccccact
tgggcactgcctagtggagctgtgagaagagggtcaccatcctctacaccccaaaatggt
agatccaccaacaacttgcaccatgtacctggaaaaactgcagacactcaacaccagcct
gtgaaagcagtcaagagggaggttgtaccttgcaaacccacagaggcggagctgcccagg
gctgtggcagcccaccttttgcatcagcataacctagataaccctgattttgttcagggg
aataatgtgcccagtggatctcaagtgggagcatttcggaactctttgctggctgatctg
actgtcacagcactggagctccctaactattcagttagatcccatggcccaggatccagg
ctggcccacatagactcagactccaggtctgcccagctccagactggttcccatgacacc
agtgtccaggccagcccctggaaccccacactacagatttacttgaacaaacccagggtc
cagaactgctacagtacatcccaataccaggctgacctcatggacccaagctccaggacc
actgctacagatccaggatccaggacagactttgtggatccaggaccaaagacccaagcc
tactattatatcatggacccaggtgccagacctgctcaaatattaatccagacaccaaac
cagtctctccagagattctgttacatggcccacacagaatctctagatgaactgactggt
gaagggttttccctgctgaagccagtctataaagaatggaaaagggacttggtgccctgc
atcccagctactccagccatgactaaaaggggccatggtacagctcgggctattgcttca
gagggtggaagtcccaagccttggcagcttccatgtggtattgagcctgcaggtccacag
aaatctataattaaggtttgggaacctccacctagatttcagaggatgtatggaaactcc
tggatgtccaggcagaagttagctgcagggtctgggccctcatggagaacttctgctagg
gcagtgtggaagggaaatgtgagattggagcccccacacagagtccctactgggacacca
cctagtggagctgtgagaatagggccaccatcctccagaccccagaatggtagatctacc
gacagcttgctccatgtgcctggaaaagtcacagacactcaacaccagcccatgaaagca
gccaggaatgggactataccctgcaaagccacaggggcggagctgcccaaggccatggga
gcccactttttgcatcagcatgacctggataagctggcgaaacgcgtgaaggccgtacac
aaggcaatgacggtgatggcaatgattcccacgggagaaccaactgtgatccagaccttt
ggcaatcctcacagtaatgcaaaggagactttaccattctcttcctcattttacagaaaa
agaactagaaagggagaaatcaagtaa

>gi568815586r:10706054_10906980|GENSCAN_predicted_peptide_3|134_aa
MLLVLLSVVLLALSSAQSTDNDVNYEDFTFTIPDVEDSSQRPDQGPQRPPPEGLLPRPPG
DSGNQDDGPQQRPPKPGGHHRHPPPPPFQNQQRPPRRGHRQLSLPRFPSVSLQEASSFFQ
RDRPARHPQEQPLW

>gi568815586r:10706054_10906980|GENSCAN_predicted_CDS_3|405_bp
atgctgctggtcctgctctcagtggtccttctggctctgagctcagctcagagcacagat
aatgatgtgaactatgaagactttactttcaccataccagatgtagaggactcaagtcag
agaccagatcagggaccccagagacctcctcctgaaggactcctacctagaccccctggt
gatagtggtaaccaagatgatggtcctcagcagagaccaccaaaaccaggaggccatcac
cgccatcctcccccacctccttttcaaaatcagcaacgaccaccccgacgaggacaccgt
caactctctctaccccgatttccttctgtcagcctgcaggaagcatcatcattcttccag
agggacagaccagcaagacatccccaggagcaaccactctggtaa

>gi568815586r:10706054_10906980|GENSCAN_predicted_peptide_4|165_aa
MDGPATPVSTDSNPPTQQEDSSACKCTHLEKRLFPLLLVAQLLLSPPGAAAVKCQLDPAK
WQDPQHSSICSVLHLRHWKGCEPDIGSQSTCFPEPESCLPVAADTDSNVTPATQQQRCCT
LACNLGTGPLHLLLSLLMQLGARACATGSDLTSTSSRATVNLHVP

>gi568815586r:10706054_10906980|GENSCAN_predicted_CDS_4|498_bp
atggatggccctgctacacctgtgagcactgacagcaacccgcccacccagcaggaagac
agcagtgcatgtaagtgcacacaccttgagaaaaggctcttcccactgctgctggtggca
cagttgctgctgtcaccaccgggggctgcagcagtgaaatgccagttggacccagcaaag
tggcaggatcctcagcattctagcatatgcagtgttctgcacctcaggcactggaaaggc
tgtgaaccagacatagggagccaaagcacatgctttccagaaccagagagctgcctccct
gtggctgctgacacagacagcaatgtcacccccgcaacacagcagcagagatgctgcaca
cttgcatgcaacctggggacaggccctctccatctgctgctgagtctgctgatgcagctg
ggggccagagcatgtgccactggcagtgacctgacttccaccagcagcagagccactgtg
aacttgcacgtaccctga

>gi568815586r:10706054_10906980|GENSCAN_predicted_peptide_5|82_aa
MDGTGGHYVKGNKPGTEKQTVHVLTYVDHTETKKPEYIEKHINETIHFPELKVNSPYRKG
PMIIQKPKFNIFRAQCKKTISG

>gi568815586r:10706054_10906980|GENSCAN_predicted_CDS_5|249_bp
atggatggaactggagggcattatgttaagggaaataagccaggcacagaaaaacaaaca
gtgcatgttctcacttatgttgatcacacagagaccaagaaaccagaatatattgagaaa
cacatcaatgaaacaatacatttcccagaactaaaggttaattctccatatcgaaagggc
ccaatgattatccaaaagcccaaatttaacattttcagggctcagtgcaagaagacaatt
agtggctaa

>gi568815586r:10706054_10906980|GENSCAN_predicted_peptide_6|235_aa
XALEKQGTLPSEHWVAQIPSGKRYLLTFQCKASSSEGKMDRELTRFSQHKVGSDTRASCK
MLLILLSVALLAFSSAQDLNEDGGDSEQFLDEERQGPPLGGQQSQPSAGDGNQDDGPQQG
PPQQGGQQQQGPPPPQGKPQGPPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGP
PQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ

>gi568815586r:10706054_10906980|GENSCAN_predicted_CDS_6|708_bp
nnggctttggagaaacaaggtactcttccctctgagcactgggttgctcagatccccagt
ggaaagagatatttgcttacattccagtgtaaagcttcttcttcagaaggcaagatggac
agggagctgacacgtttctcccagcacaaagttgggagtgacaccagagcctcctgcaag
atgcttctgattctgctgtcagtggccctgctggccttcagctcagctcaggatttaaat
gaagatggaggagactctgagcagttcctagatgaggagcgtcagggaccacctttggga
ggacagcaatctcaaccctctgctggtgatgggaaccaggatgatggccctcagcaggga
ccaccccaacaaggaggccagcagcaacaaggtccaccacctcctcagggaaagccacaa
ggaccaccccaacaaggaggccagcagcaacaaggtccaccacctcctcagggaaagcca
caaggaccaccccaacagggaggccatccccctcctcctcaaggaaggccacaaggacca
ccccaacagggaggccatccccgtcctcctcgaggaaggccacaaggaccaccccaacag
ggaggccatcagcaaggtcctcccccacctcctcctggaaagccccagggaccacctccc
caagggggccgcccacaaggacctccacaggggcagtctcctcagtaa