GENSCAN 1.0	Date run:  5-Nov-116	Time: 03:08:05

Sequence gi568815596f:68265352_68495813 : 230462 bp : 39.88% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   8643   8918  276  2  0   56   42   175 0.523   4.83
 1.02 PlyA +   9266   9271    6                               1.05

 2.03 PlyA -   9411   9406    6                               1.05
 2.02 Term -  19133  19077   57  2  0   96   47    87 0.608   2.11
 2.01 Init -  21348  21316   33  0  0   56   77    47 0.664   0.33
 2.00 Prom -  25194  25155   40                              -2.45

 3.06 PlyA -  25409  25404    6                               1.05
 3.05 Term -  28675  28511  165  1  0   73   48   104 0.303   1.83
 3.04 Intr -  34950  34870   81  0  0   46   85    61 0.262   0.52
 3.03 Intr -  51956  51806  151  1  1   35  107   172 0.562  13.04
 3.02 Intr -  54115  53871  245  1  2   79   72   324 0.925  25.27
 3.01 Init -  56095  56024   72  1  0  118   44    35 0.663   3.22
 3.00 Prom -  61965  61926   40                              -5.35

 4.00 Prom +  62190  62229   40                              -3.55
 4.01 Init +  76851  76865   15  2  0   79   95    16 0.292   1.29
 4.02 Term +  80447  80572  126  1  0   55   40   170 0.704   6.20
 4.03 PlyA +  81924  81929    6                               1.05

 5.00 Prom +  82139  82178   40                              -7.05
 5.01 Init +  82354  83208  855  0  0   43   25   311 0.397  14.97
 5.02 Intr +  85538  85620   83  1  2  102   94    44 0.128   3.92
 5.03 Intr + 107959 108064  106  1  1   12   96    82 0.034   0.70
 5.04 Intr + 114977 115132  156  1  0   97  115   131 0.993  15.99
 5.05 Intr + 115372 115553  182  0  2   57   22   203 0.587   8.34
 5.06 Intr + 117191 117282   92  2  2   90   98    32 0.629   3.12
 5.07 Intr + 121151 121335  185  0  2   83   41   218 0.517  15.19
 5.08 Intr + 123036 123140  105  2  0   51  109   101 0.456   7.99
 5.09 Intr + 128756 128825   70  1  1  104   95    47 0.125   4.84
 5.10 Term + 130329 130465  137  1  2  127   43   159 0.951  12.50
 5.11 PlyA + 131989 131994    6                               1.05

 6.00 Prom + 132742 132781   40                              -8.55
 6.01 Sngl + 141160 141708  549  0  0   87   42   321 0.812  23.26
 6.02 PlyA + 141768 141773    6                               1.05

 7.04 PlyA - 145531 145526    6                               1.05
 7.03 Term - 153781 153612  170  2  2   93   37   107 0.072   3.16
 7.02 Intr - 166774 166516  259  1  1   60    7   214 0.147   6.61
 7.01 Init - 168567 167803  765  0  0   28   69   339 0.126  18.83
 7.00 Prom - 168923 168884   40                              -9.25

 8.00 Prom + 169219 169258   40                              -8.45
 8.01 Init + 169617 169697   81  2  0   58   76   105 0.506   7.32
 8.02 Term + 180190 180399  210  0  0   74   48   196 0.605  10.51
 8.03 PlyA + 180917 180922    6                               1.05

 9.05 PlyA - 181714 181709    6                               1.05
 9.04 Term - 182837 182621  217  1  1   93   47   291 0.996  21.13
 9.03 Intr - 183033 182849  185  0  2   18    7   214 0.697   3.96
 9.02 Intr - 183399 183285  115  2  1  -52   76   253 0.825   9.63
 9.01 Init - 183700 183552  149  1  2   76   92   178 0.765  16.61
 9.00 Prom - 189778 189739   40                              -3.65

10.03 PlyA - 189785 189780    6                               1.05
10.02 Term - 190532 190275  258  2  0   29   41   207 0.045   4.67
10.01 Init - 199554 199489   66  0  0   39  110    98 0.685   8.22
10.00 Prom - 200352 200313   40                              -6.65

11.00 Prom + 200862 200901   40                              -1.25
11.01 Init + 202381 202476   96  0  0   89   83   156 0.967  14.25
11.02 Term + 214529 214594   66  1  0  103   37   105 0.737   3.86
11.03 PlyA + 218406 218411    6                              -0.45

12.03 PlyA - 218663 218658    6                               1.05
12.02 Term - 220184 220056  129  2  0   54   42   102 0.721  -0.60
12.01 Init - 224448 224404   45  0  0   61  119    54 0.442   6.53

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  91540  91443   98  1  2   79  105    75 0.941   8.20
S.002 Term - 199019 198858  162  2  0   85   49    69 0.853  -0.35


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_1|91_aa
MGKNPKGIDGEGKILRGLMEKNYVFHQAEKSPEFGPSGIFSGYFLLVVPEPYGPMVPELY
AVPGGNCATETQYPEGCSALVPATIDTEDRD

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_1|276_bp
atggggaaaaaccctaaggggattgatggagaaggaaaaatcctaaggggattgatggag
aagaattatgtttttcaccaggcagaaaaaagccctgaatttggtccctcaggaatcttc
tcagggtattttctgctagtagtaccagagccctatggccctatggtgccagagctctat
gcagttccaggagggaactgcgccactgagactcaatacccagaaggctgctcagctctt
gttcctgctacaatcgacactgaggatagggattaa

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_2|29_aa
MTIPRETVAQEECLEQRPQEISLTYECEE

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_2|90_bp
atgaccatcccaagggagaccgtggcccaagaggagtgcctggaacaacgaccccaagag
atctctcttacatatgaatgtgaagaataa

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_3|237_aa
MPALEPGFKMESSSSRSNALFDTQPLGRSRRCPPPPGAAAPDPRPDMGDLPGLVRLSIAL
RIQPNDGPVFYKVDGQRFGQNRTIKLLTGSSYKVEVKIKPSTLQVENISIGGVLVPLELK
SKEPDGDRVVYTGTYDTEGVTPTKSGERQPIQITMPSPDWLKLKGLAMPSVGEDIEQLKF
SLLFTDIGTFETVWQVKFYNYHKRDHCQWGSPFSVIEYECKPNETRSLMWVNKESFL

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_3|714_bp
atgccggccttagaaccaggttttaaaatggagtcatcatcctccaggtccaatgctctt
tttgatacacagccactcggccgcagccggcgctgtcctccgccccccggagccgccgcg
ccagaccctcgcccagacatgggggacctgccgggcctcgtgcgcctctccatcgcgctg
cgcatccagcctaatgacggcccggtcttttacaaggtggacgggcagcgcttcggccag
aaccgcaccatcaagctgctcaccggctcctcctacaaggttgaggtgaagattaaaccc
agcacgctgcaggtcgagaatatttccattggtggtgtgcttgtcccactggaactgaag
tctaaagagcctgatggggacagagttgtttatacgggtacatatgacacagaaggtgtg
accccaacgaagagtggagaacggcaacccatccagatcaccatgccgtcaccagactgg
ctaaaattgaaaggactggcaatgccaagtgttggagaggatatagagcaattgaaattc
tcattgctgttcacagacattgggaccttcgagacagtgtggcaagtcaagttctacaat
taccacaagcgggatcactgccagtggggaagccccttctctgtcattgagtatgaatgc
aagcccaacgagacacgcagtctgatgtgggtgaacaaggagtccttcctctga

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_4|46_aa
MNQVKSPGDGAAASRSADGPSSYKAFLVFWSLQCVEATPKQKALSH

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_4|141_bp
atgaaccaggtcaagagcccaggtgatggtgctgctgccagcagaagtgctgatgggcca
agctcctacaaagctttcttggtcttctggagccttcagtgtgttgaagccacaccaaag
cagaaggcgctttctcattag

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_5|656_aa
MNIDAKILDKILANRIQQHIKKLTYQDQVSFIPGKQAWLNICKSINVIHHINRTKEKKHM
IFSINAEKAFDKIQHRFMLKTLNKPAIDGTYLKIIRAIYDKSTANIILNGQKLEAFPVKT
STRQGCPLSPFLFNIVLEVLARAIRQEKEIMGIHVGREEVKLPLFADDLILCLENPIISA
QKPLKLINNFSKVSGYKINVQKSQAFLYTNNRQAESQIMNEFPFTIAAKRIKYPGIQLTR
DVKDLFKENYKPLLNEIREDTYKWKNIPSSWIERINIMKMTILPKALVKISFNLHNDPRG
GYDCSLQQISFHSISLFIVHNDPESQMTHPPQSQTPEAALDLEKHNVKGSVFNTWKPMWV
VLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFL
EERDAWVRDIKKAIKCIEGGQKFARKSTRRSIRLPETIDLGALYLSMKDTEKGIKELNLE
KDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGYLQPAGDMSKSAVDGTAE
NPFLDNPDAFYYFPDSGFFCEENSSDDDVILKEEFRGVIIKQGCLLKQAEDPLGAIHLRG
CVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIRAIQMASRTGK

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_5|1971_bp
atgaacattgatgcgaaaatactcgataaaatactggcaaaccgaatccagcagcacatc
aaaaaacttacctaccaagatcaagtcagcttcatccctgggaaacaagcctggctcaac
atatgcaaatcaataaatgtaatccatcacataaacagaaccaaagaaaaaaaacacatg
attttctcaataaatgcagaaaaggcctttgataaaattcaacatcgcttcatgttaaaa
actctcaataaaccagctattgatggaacatatctcaaaataataagagctatttatgac
aaatccacagcaaatatcatactgaatgggcaaaagcttgaagcatttcctgtgaaaacc
agcacaagacaaggatgccctctctcaccattcctattcaacatagtattggaagttctg
gccagggcaatcaggcaagagaaagaaataatgggcattcacgtaggaagagaggaagta
aaattgcctctgtttgcagatgacttgattctatgtttagaaaatcccatcatctcagcc
caaaaaccccttaagttgataaacaactttagcaaagtctcaggatacaaaatcaatgtg
caaaaatcacaagcattcctttacaccaacaatagacaagcagagagccaaatcatgaat
gaattcccattcacaattgctgcaaagagaataaaatacccaggaatacagctaacaagg
gatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataagagaggac
acatacaaatggaaaaacattccatcctcatggatagaaagaatcaatatcatgaaaatg
accatactgcccaaagcattagtcaagatctcatttaatcttcacaacgaccctagagga
ggctacgattgctctctgcaacagatctcatttcacagtatcagcctcttcattgtgcat
aatgaccctgaatcccaaatgacacatcctcctcagagtcagaccccggaggctgcactt
gatttagaaaagcacaacgtgaaggggagcgtgttcaatacgtggaaacccatgtgggtt
gtattgttagaagatggaattgaattctataagaagaaaagtgacaacagccccaaagga
atgatcccgctgaaagggagcactctgactagcccttgtcaagactttggcaaaaggatg
tttgtgtttaagatcactacgaccaaacagcaggaccacttcttccaggcagccttcctg
gaggagagagatgcctgggttcgggatatcaagaaggccattaaatgcattgaaggaggc
cagaaatttgccaggaaatctaccaggaggtccattcgactgccagaaaccattgactta
ggtgccttatatttgtccatgaaagacactgaaaaaggaataaaagaactgaatctagag
aaggacaagaagatttttaatcactgcttcacaggtaactgcgtcattgattggctggta
tccaaccagtctgttaggaatcgccaggaaggcctcatgattgcttcatcgctgctcaat
gaggggtatctgcagcctgctggagacatgtccaagagtgcagtggatggaactgctgaa
aaccctttcctggacaaccctgatgccttctactactttccagacagtgggttcttctgt
gaagagaattccagtgatgatgatgtgattctgaaagaagaattcagaggggtcattatc
aagcagggatgtttactgaagcaggcagaagatcccctgggagcaattcacttgagaggc
tgtgtggtgacttcagtggagagcaactcaaatggcaggaagagtgaggaagagaacctt
tttgagatcatcacagcagatgaagtgcactatttcttgcaagcagccacccccaaggag
cgcacagagtggatcagagccatccagatggcctcccgaactgggaagtaa

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_6|182_aa
MELKNTAQELCEAYTSINSQIDQAEERIAEIKDKINEIKCEDKIREKRMKRNEQSLQEIW
DYVKRPNLCLIGVPGSDRENGTRLENTLQDIIQDNFPNLARQANIQIQEIQRPPQRYSLR
RATPRHIIIRLTKVEMKEKMLRAAREKGQVTHKWKPIKLTADLSAETLQARREWGPIFDI
LK

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_6|549_bp
atggagctgaaaaacacagcacaagaactttgtgaagcatacacaagtatcaatagccaa
atcgatcaagcagaagaaaggatagcagagattaaagataaaattaatgaaataaagtgt
gaagacaagattagggagaaaagaatgaaaaggaatgaacaaagcctccaagaaatatgg
gactatgtgaaaagaccaaacctatgtttgattggtgtacctggaagtgacagggagaat
ggaaccagattggaaaacactcttcaggatattatccaggacaacttccccaacctagca
agacaggccaacattcaaattcaggaaatacagagacctccacaaagatactccttgaga
agagcaaccccaagacatataatcatcagattgaccaaggttgaaatgaaggaaaaaatg
ttaagggcagccagagagaaaggtcaggttacccacaaatggaagcccatcaaactaaca
gctgatctctctgcagaaaccctgcaagccagaagagagtgggggccaatattcgacatt
cttaaataa

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_7|397_aa
MVAVGLLEGLLPSCCLQWGDASGGIRSGFRGSSGSSGPLCPVSPRRPTVPTPLSYSWAGP
TPRPVVSTRASALLPAASQEPMSTQPQAQLGLTGLPLEHQVHLCRSWLGSLPNLHLIHCC
YRENVGRRCGQDCALHGAHRSWEQARAPPFPSWQGRAPQRQLQPPKLQQQPGHPCALRSQ
KQAGAPPSQAQRQLPKLWLQIQASLHSQRPEKACPLPLQDRKCLLPLPGFSLLPAPAPIL
EQRRGQAQVLSQPSQAKRGREELRPFGDPRPGCSLSQGCDSLFGALQLLESASFQAPEHL
PVPAMEAACGAPSPDAALQGASTHTSTWSCLPHSSSWHAQLSSENRVVIPFVEIIPLLFR
QSSLAGFSPDPQGLILLVCNGKPSLRHPLPWQCRSTG

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_7|1194_bp
atggtggcggtgggacttctggaggggttgctgccatcatgctgcctgcagtggggagat
gccagtggtggcatcaggagtggcttcaggggcagcagtggcagcagtgggcccttgtgc
cctgtgtccccaagacggccaactgtaccaaccccactctcatacagctgggcaggaccc
actcccaggcctgtagtctccaccagggcctcagccttgctccctgctgcatcccaggaa
cccatgagcacccagccacaggcacagctgggactcacagggctgcccctggagcatcag
gttcatttgtgcaggagttggctggggtcgctgcccaacctgcacctcatccactgctgc
tacagggaaaatgtaggaaggaggtgtggccaggactgtgcactccatggagcacacagg
agctgggaacaagcaagagccccgccctttccgagttggcagggcagagcaccccagagg
caactgcagccacccaagctgcagcagcaaccagggcacccctgtgctctcaggagccag
aagcaggcaggagccccaccatcccaggcacagcggcagctgcccaagctgtggctgcag
atccaagcatctctgcactctcagaggcctgagaaggcatgcccccttcccctgcaggac
aggaaatgcctgcttccactgcctggcttctccctgctgccagcacctgctccaatcttg
gagcaaaggcggggccaagctcaggtgctgtcacagcccagccaggcaaaaagagggaga
gaagagctgcggccctttggggatcccaggcctgggtgttccctgagccagggctgtgac
tccctctttggagccctgcagcttctggagtctgcaagcttccaggccccagagcatttg
ccagtgccagctatggaagctgcttgtggtgcacctagtccagatgcagccttgcaggga
gccagcacccacaccagcacctggagttgcttgccccacagcagcagctggcatgcccag
ctatcctctgagaatcgggtggtcatcccctttgttgagatcatacccctgctgttccgg
cagtcctctttggcaggattttcaccagacccacagggccttatcctgcttgtctgcaat
gggaagccctcactcaggcatcctttaccctggcaatgcaggagcacaggctga

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_8|96_aa
MSLPEEHQDQYGKSTVGMGDGEKKGLRCAQRSNQNNKHARRLRSPSCKTGFLAGPMSSQF
LNQVHRLCKRHLTELPATLKRVWALPTWEPLATGTS

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_8|291_bp
atgagtctgcctgaggagcatcaagatcagtatggcaaaagcacagtgggcatgggagat
ggggagaaaaagggcctgaggtgtgcgcaaaggtcaaatcaaaataacaaacacgcacga
cgtcttcgatcaccttcctgtaaaaccgggtttctagccggacccatgtcctcacagttc
ctgaatcaagttcaccgtctgtgcaagcgccacctgacagagctccctgcgacactgaaa
cgcgtttgggcacttcccacgtgggaaccactcgccacgggcacctcctga

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_9|221_aa
MTASSSMTAVLENKSQENKGDDEPPLVQGSGAIVGPPSPSLAAVFFNRWHHTDAADWSCS
TFLSMLLDVAVHPDDHFVLTADRDEKIQENRVVLLSTCIAVGYIFQFHAGRQKLVYRQQL
SFQHRVWDVAFEETQGLSVLQDCLEAPLPWPVGGQWQSVPESAMLKKVSSVLCGNRAMLE
GSACVNPSFSSLYKANFDNITFYLKKKEERLQQQLKKQQRS

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_9|666_bp
atgacagcctcttcatctatgactgcagtgcttgaaaacaagtcacaagaaaataaaggg
gacgacgagccgcccttggttcaggggagcggtgcaattgtcggtccaccttctccaagt
ctggcagctgttttctttaaccgatggcaccacacggatgcggccgactggagctgcagc
acctttctgtccatgctattagacgtggctgtgcatcctgatgaccacttcgtcctcact
gcggaccgggacgagaagatccaggagaaccgggtggtgcttctgagcacctgcattgct
gtgggatacatcttccagtttcacgccggtagacagaagctggtgtacaggcagcagctg
tcattccagcatcgagtgtgggatgtagcttttgaggaaacccaggggctgtcggtgctc
caggactgcctggaagcccccctcccctggcctgtgggtggccagtggcagtctgttcct
gaaagtgccatgttaaagaaagtctccagtgttctttgtgggaaccgggccatgctggaa
ggctctgcctgcgtgaaccccagctttagcagtctctacaaggccaactttgacaacata
accttctacctgaagaagaaagaggagagactgcagcagcagctgaagaagcagcagcgc
agttga

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_10|107_aa
MTVRAVCRREIDDDLESGYSWRWDMGYLSEFPPPHEIAVEVAENTAKEPHSRSRGIESLN
QEPNRGCCSVFRVTVATVQIEVGQSQLKEDSYTSIPDCAKKTDCKLQ

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_10|324_bp
atgactgtaagagctgtgtgccgaagagaaatagatgatgatctagaaagtggttattcc
tggaggtgggacatgggatatctgagtgagttccccccaccccatgagatagctgtagaa
gtagctgagaacacagcaaaggagcctcacagccgaagccgtgggattgagagcctaaac
caagagcccaatagaggttgctgcagtgtctttagagtaacagtagccacagtgcaaatt
gaggtgggccagagtcagctgaaggaagactcctatacctcaatccccgattgtgctaag
aaaactgactgcaaattacagtaa

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_11|53_aa
MSGGFELQPRDGGPRVALAPGETVIGRGPLLGPTQGEDNEDEDLYDDPLPFNE

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_11|162_bp
atgtccgggggcttcgagctgcagccgcgggacggcggtccccgggtggccctggcgccc
ggggagacggtgatcggccgcgggccgctgctgggacctactcaaggtgaagacaatgaa
gatgaagacctatatgatgatccacttccatttaatgaataa

>gi568815596f:68265352_68495813|GENSCAN_predicted_peptide_12|57_aa
MIKVLKGRDPMLEDLITDKGNGRLTAKSGRYHLTKVITLTTSPQEDKLIDVLPNVVL

>gi568815596f:68265352_68495813|GENSCAN_predicted_CDS_12|174_bp
atgataaaggttttaaaaggaagagatcccatgctcgaggatctgattactgacaaagga
aatggtagattaactgcgaaatctggcagataccaccttaccaaggtgattacacttacc
acatcaccacaggaggacaaactgatagatgtgcttcctaatgtggtactctga