Result of FASTA (omim) for
pF1KE0717
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0717, 305 aa
1>>>pF1KE0717 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5910+/-0.000586; mu= 9.6495+/- 0.037
mean_var=467.0678+/-104.716, 0's: 0 Z-trim(117.5): 181 B-trim: 1738 in 1/53
Lambda= 0.059345
statistics sampled from 29427 (29633) to 29427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.347), width: 16
Scan time: 6.920
The best scores are: opt bits E(85289)
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 2111 195.1 1.5e-49
NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 1103 108.8 1.5e-23
NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 1103 108.8 1.5e-23
NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 1046 104.0 4.6e-22
NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 1046 104.0 4.6e-22
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 1046 104.0 4.7e-22
NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 1046 104.0 4.7e-22
NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 1021 101.8 1.9e-21
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 1004 100.4 5.6e-21
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 1004 100.4 5.6e-21
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 939 94.8 2.6e-19
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 939 94.8 2.6e-19
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 939 94.8 2.6e-19
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 939 94.8 2.6e-19
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 939 94.8 2.6e-19
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 897 91.1 2.9e-18
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 588 64.9 3.1e-10
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 585 64.5 3.4e-10
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 585 64.5 3.5e-10
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 581 64.1 4.3e-10
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 531 59.8 8.3e-09
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 526 59.5 1.1e-08
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 526 59.5 1.1e-08
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 520 58.9 1.6e-08
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 512 58.2 2.6e-08
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 507 57.8 3.5e-08
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 498 56.8 5.2e-08
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 498 56.8 5.2e-08
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 499 57.0 5.3e-08
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 497 57.0 6.4e-08
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 497 57.0 6.5e-08
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 497 57.0 6.5e-08
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 493 56.5 7.4e-08
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 471 54.6 2.7e-07
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 471 54.6 2.8e-07
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 359 45.0 0.00021
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 352 44.0 0.00025
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 352 44.0 0.00025
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 344 43.3 0.00041
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 344 43.3 0.00041
NP_005372 (OMIM: 164035) nucleolin [Homo sapiens] ( 710) 354 45.3 0.00043
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 344 43.4 0.00044
NP_000412 (OMIM: 113800,148080,607602,609165) kera ( 584) 350 44.8 0.0005
XP_005257400 (OMIM: 113800,148080,607602,609165) P ( 624) 350 44.9 0.00051
NP_000217 (OMIM: 144200,607606) keratin, type I cy ( 623) 341 44.1 0.00087
XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323) 333 42.9 0.001
NP_000418 (OMIM: 152445,604117) loricrin [Homo sap ( 312) 332 42.8 0.0011
NP_006112 (OMIM: 113800,139350,144200,146590,60096 ( 644) 336 43.7 0.0012
XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501) 333 43.2 0.0013
NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589) 333 43.4 0.0014
>>NP_006796 (OMIM: 609409) heterogeneous nuclear ribonuc (305 aa)
initn: 2111 init1: 2111 opt: 2111 Z-score: 1010.5 bits: 195.1 E(85289): 1.5e-49
Smith-Waterman score: 2111; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 FGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY
250 260 270 280 290 300
pF1KE0 GGSSF
:::::
NP_006 GGSSF
>>NP_001317179 (OMIM: 605372) heterogeneous nuclear ribo (331 aa)
initn: 1292 init1: 887 opt: 1103 Z-score: 543.8 bits: 108.8 E(85289): 1.5e-23
Smith-Waterman score: 1103; 56.2% identity (78.2% similar) in 308 aa overlap (2-302:30-325)
10 20 30
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGT
: :: :::::::. .:....:: ::: .::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 LTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPG
::::::. .::::::: ::::::: :::.:::: : :: ::: .:: :::::::::..::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 AHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAA
:: :::.::::.: :. : .: ..: ..: .: :.. :.::::::::.:: :..::..
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 DKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLS
:: .: :.: :.:: :::::. :... :.: :. .::: .: ::::. .: .
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAG----SQRGRGGGSGNFMGRGGNFGGGGGN
190 200 210 220 230
220 230 240 250 260
pF1KE0 KGGGGGYNSYGGYGGGGGGGYNAYGGGGGG-SSYGGS-DYGNG--FGGFGSYS-QHQSSY
: ::.... :::::::::. ..:::: :: ...::. .::.: .. ::.:: :.::.:
NP_001 FGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGNYGGGGNYNDFGNYSGQQQSNY
240 250 260 270 280 290
270 280 290 300
pF1KE0 GPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF
::::.: :.::::...:: ::::.::: ::
NP_001 GPMKGG--------SFGGRSSGSPYGGGYGSGGGSGGYGSRRF
300 310 320 330
>>NP_001317180 (OMIM: 605372) heterogeneous nuclear ribo (331 aa)
initn: 1292 init1: 887 opt: 1103 Z-score: 543.8 bits: 108.8 E(85289): 1.5e-23
Smith-Waterman score: 1103; 56.2% identity (78.2% similar) in 308 aa overlap (2-302:30-325)
10 20 30
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGT
: :: :::::::. .:....:: ::: .::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 LTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPG
::::::. .::::::: ::::::: :::.:::: : :: ::: .:: :::::::::..::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 AHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAA
:: :::.::::.: :. : .: ..: ..: .: :.. :.::::::::.:: :..::..
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 DKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLS
:: .: :.: :.:: :::::. :... :.: :. .::: .: ::::. .: .
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAG----SQRGRGGGSGNFMGRGGNFGGGGGN
190 200 210 220 230
220 230 240 250 260
pF1KE0 KGGGGGYNSYGGYGGGGGGGYNAYGGGGGG-SSYGGS-DYGNG--FGGFGSYS-QHQSSY
: ::.... :::::::::. ..:::: :: ...::. .::.: .. ::.:: :.::.:
NP_001 FGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGNYGGGGNYNDFGNYSGQQQSNY
240 250 260 270 280 290
270 280 290 300
pF1KE0 GPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF
::::.: :.::::...:: ::::.::: ::
NP_001 GPMKGG--------SFGGRSSGSPYGGGYGSGGGSGGYGSRRF
300 310 320 330
>>NP_001317176 (OMIM: 605372) heterogeneous nuclear ribo (356 aa)
initn: 1429 init1: 934 opt: 1046 Z-score: 517.1 bits: 104.0 E(85289): 4.6e-22
Smith-Waterman score: 1046; 54.2% identity (76.1% similar) in 306 aa overlap (2-300:8-307)
10 20 30 40 50
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVT
: :: :::::::. .:....:: ::: .::::::::. .::::::: :::::
NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 YSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDL
:: :::.:::: : :: ::: .:: :::::::::..:::: :::.::::.: :. : .:
NP_001 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 IEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAV
..: ..: .: :.. :.::::::::.:: :..::..:: .: :.: :.:: :::::.
NP_001 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PKEDIYSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYN
:... :.: :. .::: .: ::::. .: . : ::.... :::::::::. .
NP_001 SKQEMQSAG----SQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG
190 200 210 220 230
240 250 260 270 280
pF1KE0 AYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSG----GGGGGGGSSWGGRSNSG
.:::: :: . :.: :: .:: .::. ...:: : ::: :::... : ...:
NP_001 SYGGGDGGYNGFGGDGGN-YGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYDGYNEGG
240 250 260 270 280 290
290 300
pF1KE0 PYRGG-YGGGGGYGGSSF
. :: :::::.:
NP_001 NFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR
300 310 320 330 340 350
>>NP_001317177 (OMIM: 605372) heterogeneous nuclear ribo (356 aa)
initn: 1429 init1: 934 opt: 1046 Z-score: 517.1 bits: 104.0 E(85289): 4.6e-22
Smith-Waterman score: 1046; 54.2% identity (76.1% similar) in 306 aa overlap (2-300:8-307)
10 20 30 40 50
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVT
: :: :::::::. .:....:: ::: .::::::::. .::::::: :::::
NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 YSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDL
:: :::.:::: : :: ::: .:: :::::::::..:::: :::.::::.: :. : .:
NP_001 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 IEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAV
..: ..: .: :.. :.::::::::.:: :..::..:: .: :.: :.:: :::::.
NP_001 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 PKEDIYSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYN
:... :.: :. .::: .: ::::. .: . : ::.... :::::::::. .
NP_001 SKQEMQSAG----SQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG
190 200 210 220 230
240 250 260 270 280
pF1KE0 AYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSG----GGGGGGGSSWGGRSNSG
.:::: :: . :.: :: .:: .::. ...:: : ::: :::... : ...:
NP_001 SYGGGDGGYNGFGGDGGN-YGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYDGYNEGG
240 250 260 270 280 290
290 300
pF1KE0 PYRGG-YGGGGGYGGSSF
. :: :::::.:
NP_001 NFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR
300 310 320 330 340 350
>>NP_919223 (OMIM: 605372) heterogeneous nuclear ribonuc (378 aa)
initn: 1429 init1: 934 opt: 1046 Z-score: 516.9 bits: 104.0 E(85289): 4.7e-22
Smith-Waterman score: 1046; 54.2% identity (76.1% similar) in 306 aa overlap (2-300:30-329)
10 20 30
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGT
: :: :::::::. .:....:: ::: .::
NP_919 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 LTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPG
::::::. .::::::: ::::::: :::.:::: : :: ::: .:: :::::::::..::
NP_919 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 AHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAA
:: :::.::::.: :. : .: ..: ..: .: :.. :.::::::::.:: :..::..
NP_919 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 DKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLS
:: .: :.: :.:: :::::. :... :.: :. .::: .: ::::. .: .
NP_919 DKIVVQKYHTINGHNCEVKKALSKQEMQSAG----SQRGRGGGSGNFMGRGGNFGGGGGN
190 200 210 220 230
220 230 240 250 260 270
pF1KE0 KGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKS
: ::.... :::::::::. ..:::: :: . :.: :: .:: .::. ...::
NP_919 FGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGN-YGGGPGYSS-RGGYGGGGP
240 250 260 270 280 290
280 290 300
pF1KE0 G----GGGGGGGSSWGGRSNSGPYRGG-YGGGGGYGGSSF
: ::: :::... : ...: . :: :::::.:
NP_919 GYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGR
300 310 320 330 340 350
NP_919 SSGSPYGGGYGSGGGSGGYGSRRF
360 370
>>NP_001317178 (OMIM: 605372) heterogeneous nuclear ribo (378 aa)
initn: 1429 init1: 934 opt: 1046 Z-score: 516.9 bits: 104.0 E(85289): 4.7e-22
Smith-Waterman score: 1046; 54.2% identity (76.1% similar) in 306 aa overlap (2-300:30-329)
10 20 30
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGT
: :: :::::::. .:....:: ::: .::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 LTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPG
::::::. .::::::: ::::::: :::.:::: : :: ::: .:: :::::::::..::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 AHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAA
:: :::.::::.: :. : .: ..: ..: .: :.. :.::::::::.:: :..::..
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 DKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGR--GRGGGRDQNGLS
:: .: :.: :.:: :::::. :... :.: :. .::: .: ::::. .: .
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAG----SQRGRGGGSGNFMGRGGNFGGGGGN
190 200 210 220 230
220 230 240 250 260 270
pF1KE0 KGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKS
: ::.... :::::::::. ..:::: :: . :.: :: .:: .::. ...::
NP_001 FGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGN-YGGGPGYSS-RGGYGGGGP
240 250 260 270 280 290
280 290 300
pF1KE0 G----GGGGGGGSSWGGRSNSGPYRGG-YGGGGGYGGSSF
: ::: :::... : ...: . :: :::::.:
NP_001 GYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGR
300 310 320 330 340 350
NP_001 SSGSPYGGGYGSGGGSGGYGSRRF
360 370
>>NP_002127 (OMIM: 164017,615424,615426) heterogeneous n (320 aa)
initn: 828 init1: 828 opt: 1021 Z-score: 505.9 bits: 101.8 E(85289): 1.9e-21
Smith-Waterman score: 1021; 52.0% identity (77.5% similar) in 306 aa overlap (2-304:9-309)
10 20 30 40 50
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFV
: :: :::::::. .:.. .::.::: .::::::::. .:.::::: ::::
NP_002 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 TYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGD
::..:::.:::: : :: ::: .:: ::::::::: ::::: :::.::::.: :. :
NP_002 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA
: ..: :.: .: ::..:. :::::::.:: :..::..:: .. :.: ..:: ::.::
NP_002 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 VPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG-GGGGYN
. :... :.... .::. :. :: ::::: : . : ::.... ::.::. :::::.
NP_002 LSKQEMASASSSQRGRSGSGNFGG-GRGGGFGGND-NFGRGGNFSGRGGFGGSRGGGGYG
190 200 210 220 230
240 250 260 270 280 290
pF1KE0 AYGGGGGGSSYGGSDYGNG--FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPY
. : : .: . ::..:.: .. ::.:....:..::::.:. :: ... .:: .: :
NP_002 GSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG---GGQY
240 250 260 270 280 290
300
pF1KE0 RGGYGGGGGYGGSSF
. . :::::::
NP_002 FAKPRNQGGYGGSSSSSSYGSGRRF
300 310 320
>>XP_005268883 (OMIM: 164017,615424,615426) PREDICTED: h (372 aa)
initn: 1537 init1: 867 opt: 1004 Z-score: 497.5 bits: 100.4 E(85289): 5.6e-21
Smith-Waterman score: 1014; 51.2% identity (70.0% similar) in 340 aa overlap (2-302:9-343)
10 20 30 40 50
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFV
: :: :::::::. .:.. .::.::: .::::::::. .:.::::: ::::
XP_005 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 TYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGD
::..:::.:::: : :: ::: .:: ::::::::: ::::: :::.::::.: :. :
XP_005 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA
: ..: :.: .: ::..:. :::::::.:: :..::..:: .. :.: ..:: ::.::
XP_005 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
130 140 150 160 170 180
180 190 200 210
pF1KE0 VPKEDIYSGG----GGGGSRSSRGGRGGR-------GRGG---GRDQNGLSKGGGG----
. :... :.. : .:: . ::::: :::: :: : :.::::
XP_005 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 --GYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGN---GFGGFGSYSQHQSSYGPMKS
:::..:. :: :::: .:.::. : . ::. ::: :.:: :::...... :
XP_005 GDGYNGFGNDGGYGGGG-PGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGG----
250 260 270 280 290
280 290 300
pF1KE0 GGGGGGGGSSWGG-------------RSNSGPYRGGYGGG---GGYGGSSF
:: :::.::..:: :: ::..:: :: : :::
XP_005 GGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQG
300 310 320 330 340 350
XP_005 GYGGSSSSSSYGSGRRF
360 370
>>NP_112420 (OMIM: 164017,615424,615426) heterogeneous n (372 aa)
initn: 1537 init1: 867 opt: 1004 Z-score: 497.5 bits: 100.4 E(85289): 5.6e-21
Smith-Waterman score: 1014; 51.2% identity (70.0% similar) in 340 aa overlap (2-302:9-343)
10 20 30 40 50
pF1KE0 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFV
: :: :::::::. .:.. .::.::: .::::::::. .:.::::: ::::
NP_112 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 TYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGD
::..:::.:::: : :: ::: .:: ::::::::: ::::: :::.::::.: :. :
NP_112 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA
: ..: :.: .: ::..:. :::::::.:: :..::..:: .. :.: ..:: ::.::
NP_112 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
130 140 150 160 170 180
180 190 200 210
pF1KE0 VPKEDIYSGG----GGGGSRSSRGGRGGR-------GRGG---GRDQNGLSKGGGG----
. :... :.. : .:: . ::::: :::: :: : :.::::
NP_112 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 --GYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGN---GFGGFGSYSQHQSSYGPMKS
:::..:. :: :::: .:.::. : . ::. ::: :.:: :::...... :
NP_112 GDGYNGFGNDGGYGGGG-PGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGG----
250 260 270 280 290
280 290 300
pF1KE0 GGGGGGGGSSWGG-------------RSNSGPYRGGYGGG---GGYGGSSF
:: :::.::..:: :: ::..:: :: : :::
NP_112 GGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQG
300 310 320 330 340 350
NP_112 GYGGSSSSSSYGSGRRF
360 370
305 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:57:21 2016 done: Sat Nov 5 02:57:22 2016
Total Scan time: 6.920 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]