GENSCAN 1.0	Date run:  5-Nov-116	Time: 02:55:31

Sequence gi568815596r:42662911_42864179 : 201269 bp : 44.76% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    316    440  125  0  2   69   68    48 0.268   0.55
 1.02 Intr +   2659   2749   91  1  1   64   79    56 0.390   2.30
 1.03 Intr +  19491  19679  189  2  0   80   78   107 0.572   8.68
 1.04 Intr +  45964  46186  223  0  1  105   64    61 0.193   3.10
 1.05 Intr +  56078  56164   87  0  0  113   80     3 0.319   1.94
 1.06 Intr +  59979  60125  147  1  0   55   80    52 0.298   1.31
 1.07 Intr +  64442  64576  135  0  0  100   68    79 0.031   7.64
 1.08 Intr +  91309  91338   30  2  0  108   94    65 0.149   7.20
 1.09 Term +  98167  98564  398  2  2   45   55   122 0.028  -0.16
 1.10 PlyA +  99583  99588    6                               1.05

 2.15 PlyA -  99611  99606    6                               1.05
 2.14 Term - 101320  99998 1323  1  0   32   55  1293 0.539 111.97
 2.13 Intr - 104237 104116  122  0  2  125   54    97 0.877  10.21
 2.12 Intr - 104605 104497  109  1  1  112   69    30 0.961   3.36
 2.11 Intr - 104767 104702   66  1  0  111    8    77 0.654   1.10
 2.10 Intr - 105018 104818  201  0  0   47   64   124 0.957   5.38
 2.09 Intr - 106948 106803  146  2  2   34   95   145 0.838   9.80
 2.08 Intr - 107276 107233   44  1  2  140   81    57 0.999   8.08
 2.07 Intr - 107672 107583   90  1  0   83   38   146 0.817   8.21
 2.06 Intr - 120510 120404  107  0  2  101   99   100 0.620  11.41
 2.05 Intr - 120957 120874   84  0  0   97   78   107 0.969  10.62
 2.04 Intr - 125697 125619   79  2  1   60   92   140 0.328  11.15
 2.03 Intr - 130462 130358  105  0  0   76   75    84 0.308   5.23
 2.02 Intr - 133162 133091   72  0  0  125   81    19 0.296   3.42
 2.01 Init - 134558 134446  113  2  2   46   59   107 0.495   3.28
 2.00 Prom - 142460 142421   40                              -6.46

 3.04 PlyA - 145043 145038    6                               1.05
 3.03 Term - 147592 147359  234  1  0   47   49   205 0.857   8.82
 3.02 Intr - 151208 151150   59  0  2   89   82    63 0.896   4.40
 3.01 Init - 158730 158592  139  0  1   46   87   117 0.970   7.70
 3.00 Prom - 161933 161894   40                              -7.26

 4.00 Prom + 162410 162449   40                              -6.16
 4.01 Init + 162730 162813   84  0  0   66  101    -6 0.507  -0.68
 4.02 Intr + 163113 163196   84  2  0   79   72    29 0.306   0.42
 4.03 Term + 164729 165004  276  1  0   70   33   223 0.536  10.46
 4.04 PlyA + 165322 165327    6                              -3.64

 5.09 PlyA - 165485 165480    6                              -0.45
 5.08 Term - 166006 165924   83  2  2   68   47   118 0.649   3.56
 5.07 Intr - 166245 166087  159  1  0   69   86   105 0.329   8.36
 5.06 Intr - 187389 187181  209  2  2   74   52    82 0.723   1.92
 5.05 Intr - 187826 187677  150  1  0  104   61    85 0.793   6.68
 5.04 Intr - 188474 188304  171  1  0   28  110    73 0.260   2.56
 5.03 Intr - 191375 191309   67  0  1   89   34    79 0.301   0.56
 5.02 Intr - 193527 193466   62  2  2   58  105    73 0.361   4.38
 5.01 Intr - 200667 200558  110  0  2   59   94    75 0.213   4.28

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:42662911_42864179|GENSCAN_predicted_peptide_1|474_aa
MVESSRGSWADLPEVERACVGSWFTAAAAHCFPLLVNVQDSRARSALPWLEEQNVMSIVR
ELDRSLRPAKVKFHAMDTLYRHSYDLSSAISVLVPLGGPVLCRDEMEEWSASEASLFEEA
LEKYGKDFNDIRQDFDPRVRSHVSRQAMQGMPVRNTGSPKSAVKTRQAFFLHTTYFTKFA
RQVCKNTLRLRQAARRPFVAINYAAIRAEYADRHAELSGSPLKSKSTRKPLACIIGYLEI
HPAKKPNVIRSTPSLQTPTTKRMLTTPNHTSLSILGKRNYSHHNGLDGCRSSSVPYAVIV
VSSPISSTVDIFTASKPGITYYVCPTWLTPSGSKPADEELLPDGELSPEKGTVGWGHSSD
QGVSPTSMWRQPEACFAREHPTPFREGLANDGKAGKGGVTQTVSEEAVLRVKMGSKENPG
QVRSAGLNPVTSIYPGTPQGQPLLSPLMGKDRTADMPANHGSICPFPFHQVMKE

>gi568815596r:42662911_42864179|GENSCAN_predicted_CDS_1|1425_bp
atggtggagagttctcgtggcagctgggctgacttgcctgaggtagagagggcctgtgtg
ggctcttggttcacagctgcagcagctcactgcttcccactgctggtgaatgtgcaggac
agcagagcaaggtctgcactcccctggcttgaagaacagaatgtcatgagcattgtgagg
gagctggatcgaagccttagacctgccaaagtgaagtttcacgctatggatacattgtat
agacacagctatgatttgagcagtgccattagtgtcttagtaccactcggaggacctgtt
ttatgcagagatgaaatggaggaatggtcagcctctgaagctagcttatttgaagaggca
ctggaaaaatatggcaaagacttcaatgacatacggcaagattttgaccctcgtgttaga
agtcacgtgtcccgccaggccatgcagggaatgccagtccgaaacactgggagtccaaag
tctgcagtgaagacccgccaagctttcttccttcatactacatatttcacaaaatttgct
cgtcaggtctgcaaaaataccctccggctgcggcaggcagcaagacggccgtttgttgct
attaattatgctgccattagggcagaatatgcagacagacatgctgaactatctggaagt
ccactgaaaagcaaaagcactaggaagcctttggcatgtatcattgggtatttagagatc
catcctgcaaagaaacctaatgtaattcgatctacaccaagcctgcaaaccccaactacc
aagcggatgctaacaactccaaatcacacatctctgagcattctggggaaaagaaactac
agtcatcacaatggtctggatggatgtcggtccagcagtgtgccgtatgctgtcattgtg
gtttccagtcccatctcctccactgtggacatttttactgctagcaaaccaggtatcacc
tactatgtttgccctacttggttaactccaagtggctccaaaccagctgatgaagaactg
ctgccagatggagaactaagtccagagaagggtacagtgggctggggccatagttcggac
cagggagtcagtcctacctccatgtggcggcagcctgaagcctgcttcgcgagggagcac
ccaaccccgtttagagaaggccttgcaaatgatggaaaggcggggaagggtggtgtgacc
cagactgtcagtgaggaagcagtcctcagggtcaagatggggagcaaggagaatccaggg
caggttaggagtgcgggcctgaaccctgtgaccagcatctacccaggaactcctcaaggg
cagcctctgctctctcccttgatgggaaaagacaggactgcagacatgcctgcaaaccat
gggagtatctgtccatttcccttccatcaggtcatgaaggagtga

>gi568815596r:42662911_42864179|GENSCAN_predicted_peptide_2|886_aa
MDPPKIPHLKEKPYFGMRKMAVRWHHAENLVDRPQRGKTLTQASTHGGSSVPGDEISSWE
TCCVRTEYVPKTPKEFSTGLGVHCDTARTAAARLGLRHQEQLKVMFIGGPNTRKDYHIEE
GEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLE
TELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLKEPPF
PLSTRSIMEPMSLDAWLDSHHRELQAGTPLSLFGDTYETQVIAYGQGSSEGLRQNVDVWL
WQLASGAQGQGCRTPCQRASARSSALGSHTGPTLGALGPRQTQTFTQEGSSVVTMGGRRL
SLAPDDSLLVCLGANTRLCGPVCDPGPCLQEAPGVTLLPWPEAATDSVQHFHTKKALNKG
FLRNAHLGVCRRQSSLAFPCAPQDHVEHRVFLSGCENADENPRMLCHRGGQLIVPIIPLC
PEHSCRGRRLQNLLSGPWPKQPMELHNLSSPSPSLSSSVLPPSFSPSPSSAPSAFTTVGG
SSGGPCHPTSSSLVSAFLAPILALEFVLGLVGNSLALFIFCIHTRPWTSNTVFLVSLVAA
DFLLISNLPLRVDYYLLHETWRFGAAACKVNLFMLSTNRTASVVFLTAIALNRYLKVVQP
HHVLSRASVGAAARVAGGLWVGILLLNGHLLLSTFSGPSCLSYRVGTKPSASLRWHQALY
LLEFFLPLALILFAIVSIGLTIRNRGLGGQAGPQRAMRVLAMVVAVYTICFLPSIIFGMA
SMVAFWLSACRSLDLCTQLFHGSLAFTYLNSVLDPVLYCFSSPNFLHQSRALLGLTRGRQ
GPVSDESSYQPSRQWRYREASRKAEAIGKLKVQGEVSLEKEGSSQG

>gi568815596r:42662911_42864179|GENSCAN_predicted_CDS_2|2661_bp
atggatcctccgaaaatcccacacctgaaagagaaaccttattttggcatgcggaaaatg
gcagtgcgctggcatcatgctgaaaatctggtggacaggccccaaagaggaaagacacta
acccaggcttctacacatggtgggagcagcgttccaggtgatgagatcagcagctgggag
acctgctgcgtgcgaactgagtatgttcctaagacgcctaaggagttcagcacggggctc
ggggtccactgcgacactgcgcggacagcggccgctcggctgggcctcaggcaccaggag
cagctcaaagtcatgttcatcggaggccccaacaccaggaaggactatcacatcgaagag
ggtgaagaggtattttaccagctggagggagacatggttctccgagtcctggagcaaggg
aaacaccgggatgtggtcattcggcagggagagatattcctcctgcctgccagggtgccc
cactcaccacagaggtttgccaacaccgtggggctggtggttgagcgaaggcggctggag
accgagctagatgggctcaggtactatgtgggcgacaccatggacgttctgtttgagaag
tggttctactgcaaggacctcggcacgcagttggcccccatcatccaggagttcttcagc
tctgagcagtacagaacaggaaagcccatccctgaccagctgctcaaggagccaccattc
cctctgagcacacgatccatcatggagcccatgtccctggatgcctggctggacagccac
cacagggagctgcaggcaggcacaccactcagcctgtttggggacacctatgagacccag
gtgatcgcctatgggcaaggcagcagcgaaggcctgagacagaatgtggacgtgtggctg
tggcagctggcaagtggggcccagggacagggttgcagaaccccctgccagagggcatca
gcccgctcctcggccctgggctcccacacggggcccactcttggggccttggggcccagg
cagactcagacattcacccaggagggctcctcggtggtgacaatggggggacggcgcctg
agcctggcccctgatgacagcctcctggtatgcctgggagcgaacacaaggctctgtggc
cctgtctgtgacccaggaccctgcctgcaagaagcccctggggtgaccctcttgccatgg
cctgaagcagccacagactcagtgcagcacttccacaccaagaaggccctcaataaaggc
ttcctgaggaacgcacacctgggggtctgccgcaggcagtcatcactggccttcccatgt
gccccccaggaccatgtggaacacagggtgtttctcagtggctgcgagaatgctgatgaa
aaccccaggatgttgtgtcaccgtggtggccagctgatagtgccaatcatcccactttgc
cctgagcactcctgcaggggtagaagactccagaaccttctctcaggcccatggcccaag
cagcccatggaacttcataacctgagctctccatctccctctctctcctcctctgttctc
cctccctccttctctccctcaccctcctctgctccctctgcctttaccactgtggggggg
tcctctggagggccctgccaccccacctcttcctcgctggtgtctgccttcctggcacca
atcctggccctggagtttgtcctgggcctggtggggaacagtttggccctcttcatcttc
tgcatccacacgcggccctggacctccaacacggtgttcctggtcagcctggtggccgct
gacttcctcctgatcagcaacctgcccctccgcgtggactactacctcctccatgagacc
tggcgctttggggctgctgcctgcaaagtcaacctcttcatgctgtccaccaaccgcacg
gccagcgttgtcttcctcacagccatcgcactcaaccgctacctgaaggtggtgcagccc
caccacgtgctgagccgtgcttccgtgggggcagctgcccgggtggccgggggactctgg
gtgggcatcctgctcctcaacgggcacctgctcctgagcaccttctccggcccctcctgc
ctcagctacagggtgggcacgaagccctcggcctcgctccgctggcaccaggcactgtac
ctgctggagttcttcctgccactggcgctcatcctctttgctattgtgagcattgggctc
accatccggaaccgtggtctgggcgggcaggcaggcccgcagagggccatgcgtgtgctg
gccatggtggtggccgtctacaccatctgcttcttgcccagcatcatctttggcatggct
tccatggtggctttctggctgtccgcctgccgatccctggacctctgcacacagctcttc
catggctccctggccttcacctacctcaacagtgtcctggaccccgtgctctactgcttc
tctagccccaacttcctccaccagagccgggccttgctgggcctcacgcggggccggcag
ggcccagtgagcgacgagagctcctaccaaccctccaggcagtggcgctaccgggaggcc
tctaggaaggcggaggccatagggaagctgaaagtgcagggcgaggtctctctggaaaag
gaaggctcctcccagggctga

>gi568815596r:42662911_42864179|GENSCAN_predicted_peptide_3|143_aa
MLLNDQWVNEEIKKKIEKLLETNDNGNSISKPMGYSKSSTSREVYSCCVTPSSDEPFFIQ
AFYKAKGALAPAAGLGRACAFAARAQARAFCDFAPSSRLFRSRSSRGSLRVSPSGMEGPP
SLAVTGGPRGPCKERSAQPRASP

>gi568815596r:42662911_42864179|GENSCAN_predicted_CDS_3|432_bp
atgctcctgaatgaccagtgggtcaatgaagaaattaagaagaaaattgaaaaacttctt
gaaacaaatgataatggaaacagtatatcaaagcctatgggatacagcaaaagtagtact
agcagggaagtttatagctgctgtgtcacccctagctctgatgagcccttcttcatccaa
gcattctacaaagccaagggtgcgctggcgcccgcggcgggcctcggcagagcatgcgcg
ttcgcggcgcgagcccaggcccgagccttctgcgacttcgcgccgagctcccggctgttc
cgcagccgatcgagccggggaagcctgcgagtgtcgccctcggggatggaggggccgcct
agcctggccgtgacgggagggccacgggggccctgcaaagagcgcagcgcgcagccccgg
gcctcgccgtag

>gi568815596r:42662911_42864179|GENSCAN_predicted_peptide_4|147_aa
MVNFNQIDTSVFLFYVSYTLTSYCLASNRNTKKYCNYGYGRFSSFFKYRTQLWFLPARPK
HRERQEGAFATPVSLAPALTVDYYKDFCGPALSRRFWPCRRTSTTRWRCGSAIEGSSRSR
RQAGPATGPASDSDFIRTLRGNVGAYP

>gi568815596r:42662911_42864179|GENSCAN_predicted_CDS_4|444_bp
atggtgaattttaaccaaattgatacctctgtattcttattttatgtttcctatactctt
acatcatactgcttggcaagtaatagaaatacgaagaaatactgcaattatggttatggg
agattttctagcttcttcaagtacaggacacaactatggttcctaccagcaaggcccaaa
caccgggaacggcaagagggtgcatttgccactcccgtgtcgctagcaccggccttgaca
gtggactattacaaggatttctgtgggcccgctctgagccgccgtttctggccgtgcaga
cggacttctaccacacggtggcgctgcggctctgccatagaaggctcctctcggtccagg
agacaggcagggccggccacaggaccagcctccgacagcgatttcatccgcaccctgcgg
ggcaacgtgggggcctatccgtag

>gi568815596r:42662911_42864179|GENSCAN_predicted_peptide_5|336_aa
WVMHPHSSHATSNDIRGRRILPHTTELATCPASANGRDSIRFLGRMIEQGVTAQEVGGSK
AHLVPKESSLGNDLNSRREGSLLGNAAPPTQHQTKPHEGAIQLADGPCGEMPAALCLRQA
GHAHQALCMNHPSPPNRLLKPKPLKIAPSNSQNLTLPFSKLLQQPPYIHVANSSWRPLDE
QRAQSRDEATVLGGWEGPWHPKGDEGGGPGLIHTTGAVSAEGNAPSDLSHSLVGHEELSL
EKGYVHAVEFYATLKIRHFRSLLPMTPEMNWVKNGPLPYTLHVWERPEVEPAHAKAMLPP
AGATKRHSKASYLFPHLVIQYAGWNKNIIPFYGRDN

>gi568815596r:42662911_42864179|GENSCAN_predicted_CDS_5|1011_bp
tgggtcatgcatccccactctagccatgcgacctccaatgacatccgtggaaggcgcatc
cttccccacacgactgaactggccacatgcccagcctcggccaatggcagagactctatc
cgcttcctaggacggatgattgagcagggcgtgaccgcccaggaggtgggaggcagcaag
gcccacttggttccaaaggaaagttctctgggcaatgacctcaacagccgcagggaagga
tccctcctgggcaatgctgcaccccccacccaacaccagacaaagccccatgaaggagct
attcagcttgcagatgggccgtgtggagaaatgccagctgccctctgcctccgccaggca
ggccatgcacaccaagccctctgcatgaaccatccaagcccccccaacaggcttctaaaa
ccgaagcccctcaagattgcccccagcaactcccagaacctcactcttcccttctcaaag
ctgctacaacaaccaccttacatccatgtggcaaactcatcctggaggccactggatgag
caacgggctcagagcagagatgaagcaacggtcctgggagggtgggaagggccctggcat
cccaaaggggatgagggaggaggaccggggctcatccacacaactggagctgtctccgca
gaagggaatgcgcccagtgacctgagccactctctggtgggccacgaggagctctccttg
gagaaaggttatgttcatgcggtggaattctacgcaacgttgaaaataaggcatttcaga
tccctccttcccatgacccctgaaatgaattgggtgaagaatggtcccctgccctacacg
ctgcatgtctgggagaggccagaggtggagccggcacatgcaaaggcaatgctgccacct
gctggcgccacgaagagacacagcaaagcttcttacctgttccctcatttagtcatccag
tatgccggctggaacaagaacatcatcccattttatggacgagacaactga