Result of FASTA (ccds) for pF1KE0695
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0695, 284 aa
  1>>>pF1KE0695 284 - 284 aa - 284 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5342+/-0.00079; mu= 13.7238+/- 0.047
 mean_var=63.5442+/-12.824, 0's: 0 Z-trim(107.3): 17  B-trim: 0 in 0/50
 Lambda= 0.160893
 statistics sampled from 9462 (9473) to 9462 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.291), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS11301.1 RDM1 gene_id:201299|Hs108|chr17        ( 284) 1886 446.2 1.2e-125
CCDS54109.1 RDM1 gene_id:201299|Hs108|chr17        ( 261) 1681 398.6 2.4e-111
CCDS42299.1 RDM1 gene_id:201299|Hs108|chr17        ( 236) 1458 346.9 8.3e-96
CCDS54111.1 RDM1 gene_id:201299|Hs108|chr17        ( 251) 1261 301.2 5.1e-82
CCDS59281.1 RDM1 gene_id:201299|Hs108|chr17        ( 228) 1056 253.6 9.9e-68
CCDS54110.1 RDM1 gene_id:201299|Hs108|chr17        ( 166)  882 213.1 1.1e-55
CCDS82109.1 RDM1 gene_id:201299|Hs108|chr17        ( 139)  881 212.9 1.1e-55
CCDS54108.1 RDM1 gene_id:201299|Hs108|chr17        ( 116)  676 165.2 1.9e-41
CCDS59280.1 RDM1 gene_id:201299|Hs108|chr17        ( 143)  677 165.5   2e-41


>>CCDS11301.1 RDM1 gene_id:201299|Hs108|chr17             (284 aa)
 initn: 1886 init1: 1886 opt: 1886  Z-score: 2369.1  bits: 446.2 E(32554): 1.2e-125
Smith-Waterman score: 1886; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
              190       200       210       220       230       240

              250       260       270       280    
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
              250       260       270       280    

>>CCDS54109.1 RDM1 gene_id:201299|Hs108|chr17             (261 aa)
 initn: 1681 init1: 1681 opt: 1681  Z-score: 2112.6  bits: 398.6 E(32554): 2.4e-111
Smith-Waterman score: 1681; 99.6% identity (100.0% similar) in 253 aa overlap (32-284:9-261)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
CCDS54                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
      100       110       120       130       140       150        

             190       200       210       220       230       240 
pF1KE0 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
      160       170       180       190       200       210        

             250       260       270       280    
pF1KE0 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       :::::::::::::::::::::::::::::::::::::::::::
CCDS54 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
      220       230       240       250       260 

>>CCDS42299.1 RDM1 gene_id:201299|Hs108|chr17             (236 aa)
 initn: 1458 init1: 1458 opt: 1458  Z-score: 1833.5  bits: 346.9 E(32554): 8.3e-96
Smith-Waterman score: 1458; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS42 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLGKTVLIILEVLQFQ    
              190       200       210       220       230          

              250       260       270       280    
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD

>>CCDS54111.1 RDM1 gene_id:201299|Hs108|chr17             (251 aa)
 initn: 1675 init1: 1261 opt: 1261  Z-score: 1585.9  bits: 301.2 E(32554): 5.1e-82
Smith-Waterman score: 1613; 88.4% identity (88.4% similar) in 284 aa overlap (1-284:1-251)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV
       :::::::::                                 ::::::::::::::::::
CCDS54 EEPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGV
                                               190       200       

              250       260       270       280    
pF1KE0 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       210       220       230       240       250 

>>CCDS59281.1 RDM1 gene_id:201299|Hs108|chr17             (228 aa)
 initn: 1470 init1: 1056 opt: 1056  Z-score: 1329.4  bits: 253.6 E(32554): 9.9e-68
Smith-Waterman score: 1408; 86.6% identity (87.0% similar) in 253 aa overlap (32-284:9-228)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
CCDS59                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
      100       110       120       130       140       150        

             190       200       210       220       230       240 
pF1KE0 EPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVR
       ::::::::                                 :::::::::::::::::::
CCDS59 EPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGVR
      160                                        170       180     

             250       260       270       280    
pF1KE0 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
       :::::::::::::::::::::::::::::::::::::::::::
CCDS59 CEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
         190       200       210       220        

>>CCDS54110.1 RDM1 gene_id:201299|Hs108|chr17             (166 aa)
 initn: 882 init1: 882 opt: 882  Z-score: 1113.4  bits: 213.1 E(32554): 1.1e-55
Smith-Waterman score: 882; 99.3% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       :::::::::::::.                                              
CCDS54 YFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD              
              130       140       150       160                    

>>CCDS82109.1 RDM1 gene_id:201299|Hs108|chr17             (139 aa)
 initn: 881 init1: 881 opt: 881  Z-score: 1113.3  bits: 212.9 E(32554): 1.1e-55
Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE0 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
       :::::::::::::                                               
CCDS82 YFGFNGCSKRIIKDHYHSL                                         
              130                                                  

>>CCDS54108.1 RDM1 gene_id:201299|Hs108|chr17             (116 aa)
 initn: 676 init1: 676 opt: 676  Z-score: 857.4  bits: 165.2 E(32554): 1.9e-41
Smith-Waterman score: 676; 99.0% identity (100.0% similar) in 102 aa overlap (32-133:9-110)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
CCDS54                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::                                                
CCDS54 FGFNGCSKRIIKDHYHSL                                          
      100       110                                                

>>CCDS59280.1 RDM1 gene_id:201299|Hs108|chr17             (143 aa)
 initn: 676 init1: 676 opt: 677  Z-score: 857.2  bits: 165.5 E(32554): 2e-41
Smith-Waterman score: 677; 98.1% identity (100.0% similar) in 103 aa overlap (32-134:9-111)

              10        20        30        40        50        60 
pF1KE0 AELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     .:::::::::::::::::::::::::::::
CCDS59                       MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGF
                                     10        20        30        

              70        80        90       100       110       120 
pF1KE0 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYY
       40        50        60        70        80        90        

             130       140       150       160       170       180 
pF1KE0 FGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVE
       ::::::::::::.                                               
CCDS59 FGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD               
      100       110       120       130       140                  




284 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:49:43 2016 done: Sat Nov  5 02:49:43 2016
 Total Scan time:  2.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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