GENSCAN 1.0	Date run:  5-Nov-116	Time: 02:47:07

Sequence gi568815588f:5997066_6215553 : 218488 bp : 46.99% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.13 Intr -   2876   2728  149  0  2  -47   81   173 0.034   3.05
 1.12 Intr -   3641   3549   93  0  0   55   81    69 0.183   2.84
 1.11 Intr -  11433  11283  151  0  1   84   52   106 0.143   6.34
 1.10 Intr -  21054  20988   67  2  1   91   98    12 0.082   1.41
 1.09 Intr -  22434  22299  136  1  1   81   53    91 0.088   4.53
 1.08 Intr -  22876  22805   72  2  0  104   80    25 0.844   2.68
 1.07 Intr -  24628  24413  216  2  0   82   91    62 0.597   4.38
 1.06 Intr -  27289  27179  111  2  0   61   94    77 0.981   5.95
 1.05 Intr -  28960  28769  192  2  0  106  119   136 0.973  17.96
 1.04 Intr -  38936  38809  128  1  2   20   78    84 0.087   0.92
 1.03 Intr -  56855  56724  132  1  0   86   61   115 0.734   8.36
 1.02 Intr -  63389  63335   55  0  1   96   41    40 0.583  -1.86
 1.01 Init -  65086  65023   64  1  1   76  110    85 0.911   9.08
 1.00 Prom -  67999  67960   40                              -4.56

 2.06 PlyA -  69806  69801    6                               1.05
 2.05 Term -  74670  74446  225  0  0   33   38   306 0.932  16.88
 2.04 Intr -  74860  74714  147  1  0  101    7   114 0.899   5.03
 2.03 Intr -  80086  80004   83  2  2  102   13    27 0.254  -4.04
 2.02 Intr -  80489  80395   95  1  2  112   34    78 0.423   4.41
 2.01 Init -  80622  80582   41  0  2   95   94    52 0.420   4.24
 2.00 Prom -  85339  85300   40                              -1.76

 3.00 Prom +  94549  94588   40                              -6.06
 3.01 Init + 100001 100123  123  1  0   66   98    88 0.957   7.77
 3.02 Intr + 103303 103431  129  0  0  117   68    16 0.912   3.39
 3.03 Intr + 104206 104322  117  0  0   55  121   112 0.997  11.86
 3.04 Intr + 107866 108032  167  0  2   79   78   140 0.940  10.86
 3.05 Intr + 109076 109173   98  2  2   73   72   100 0.995   6.55
 3.06 Intr + 111621 111677   57  1  0  104   84    22 0.824   2.26
 3.07 Intr + 112921 113062  142  2  1   60   47   134 0.994   5.91
 3.08 Intr + 115145 115296  152  2  2   85   93   264 0.996  26.41
 3.09 Intr + 116443 116516   74  2  2   43   90    39 0.934  -1.27
 3.10 Intr + 116984 117082   99  1  0   65   63   102 0.977   5.71
 3.11 Intr + 118174 118246   73  0  1  101   96    92 0.990  10.28
 3.12 Intr + 122951 123095  145  0  1   87  101    54 0.241   5.94
 3.13 Intr + 138846 138933   88  0  1   77  115    44 0.054   5.97
 3.14 Intr + 142792 142867   76  0  1   70   45   133 0.097   6.29
 3.15 Intr + 143521 143646  126  2  0    8   77   105 0.146   2.05
 3.16 Term + 144442 144626  185  2  2   59   41    98 0.265  -0.09
 3.17 PlyA + 145797 145802    6                              -0.45

 4.14 PlyA - 146782 146777    6                               1.05
 4.13 Term - 147644 147417  228  2  0   91   41   107 0.315   2.93
 4.12 Intr - 148469 148300  170  0  2   82   59    52 0.245   1.37
 4.11 Intr - 154281 154092  190  0  1    5  127   148 0.469   9.56
 4.10 Intr - 154666 154444  223  0  1   43   54    84 0.195  -1.37
 4.09 Intr - 166977 166860  118  1  1   48   30   166 0.564   6.32
 4.08 Intr - 167271 167116  156  1  0  109   23   104 0.845   5.98
 4.07 Intr - 176360 176140  221  1  2   89   72    66 0.347   3.05
 4.06 Intr - 177543 177432  112  1  1   59   76    65 0.419   1.84
 4.05 Intr - 179946 179827  120  1  0   24  110    73 0.458   3.57
 4.04 Intr - 181363 181211  153  2  0   74   92    44 0.608   3.44
 4.03 Intr - 206281 205993  289  1  1   62   36   255 0.101  14.52
 4.02 Intr - 215041 214837  205  0  1   52   59   159 0.078   8.60
 4.01 Init - 215547 215312  236  0  2   56   52   131 0.160   3.91
 4.00 Prom - 215773 215734   40                              -5.36

 5.00 Prom + 216289 216328   40                              -9.55
 5.01 Init + 216403 216436   34  0  1   87   33    26 0.939  -4.28
 5.02 Intr + 216558 216683  126  1  0  101  100   244 0.990  27.55
 5.03 Intr + 216987 217106  120  1  0   58  105    56 0.846   4.77
 5.04 Intr + 218156 218252   97  0  1  102   72   218 0.727  20.67

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 146044 145920  125  2  2   57   39   109 0.882   1.45


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:5997066_6215553|GENSCAN_predicted_peptide_1|522_aa
MDSYLLMWGLLTFIMVPGCQAGFGGQVVFGYMNKFFSGDLLFPPTLYAVQEQAGAIGLAA
IESFYPKEEERAMFQKNKKEAAARRQPDKAKAPKGCYPSAAYRTPRGNKSTRKDTPMIVY
FSHNDGELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKSGSLYMLCTGNSSHSS
WDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQASLPGHCREPPPWENEA
TERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQPQLICTGEMETSQFPG
EEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQVAGEWGTGFVDKMYT
RLRYGQVDCGRLCFPADQRPPPEWAHLAAETELNEVFTVKMGEKLPCAFDGGKRKGTVTR
IRVKRVHQQALCEQQGCLFHLESFVNPASPASATSFAFHKVLTQTHGRISETVRLRFGSS
SQEYKSCPREGGKAGESFRQPSEDPSGKRGLNEIQMSPHFQL

>gi568815588f:5997066_6215553|GENSCAN_predicted_CDS_1|1566_bp
atggattcatacctgctgatgtggggactgctcacgttcatcatggtgcctggctgccag
gcaggttttggaggacaggtggtgtttggttacatgaataagttctttagtggtgatttg
ctttttcctcccacgctgtatgcagtgcaagaacaagctggtgcaattggactagcagca
attgagtccttttacccaaaagaagaagaaagagcaatgtttcaaaagaataaaaaggaa
gctgcagccaggcgtcagccagacaaggcaaaagctcccaagggatgttacccttcagct
gcatacagaactcctagaggcaacaaatccacaaggaaagatacacccatgatcgtgtat
ttcagccacaatgatggagagctctgtgacgatgacccgccagagatcccacacgccaca
ttcaaagccatggcctacaaggaaggaaccatgttgaactgtgaatgcaagagaggtttc
cgcagaataaaaagcgggtcactctatatgctctgtacaggaaactctagccactcgtcc
tgggacaaccaatgtcaatgcacaagctctgccactcggaacacaacgaaacaagtgaca
cctcaacctgaagaacagaaagaaaggaaaaccacagaaatgcaaagtccaatgcagcca
gtggaccaagcgagccttccaggtcactgcagggaacctccaccatgggaaaatgaagcc
acagagagaatttatcatttcgtggtggggcagatggtttattatcagtgcgtccaggga
tacagggctctacacagaggtcctgctgagagcgtctgcaaaatgacccacgggaagaca
aggtggacccagccccagctcatatgcacaggtgaaatggagaccagtcagtttccaggt
gaagagaagcctcaggcaagccccgaaggccgtcctgagagtgagacttcctgcctcgtc
acaacaacagattttcaaatacagacagaaatggctgcaaccatggagacgtccatattt
acaacagagtaccaggtagcaggtgagtggggcactggctttgtggacaaaatgtacacc
aggctgagatatggacaggttgactgtggccggctgtgttttcctgctgatcagcgtcct
cctcctgagtgggctcacctggcagcggagacagaactcaatgaggtcttcacagtgaag
atgggagaaaaacttccttgtgcttttgacgggggaaagagaaaaggtactgtcacacgc
atccgtgtgaagagagtccaccaacaggctttgtgtgagcaacaaggctgtttatttcac
ctagaatcctttgtgaatcctgcatccccggcttctgccaccagctttgctttccacaag
gttttgacacagacccatggaagaatctctgagacagtccggctgcgttttggaagcagc
agccaggagtacaagtcctgcccacgggaaggaggaaaagctggagaaagcttcagacag
ccctctgaggatccctcgggcaaacgtggcctgaacgagatccaaatgtccccgcacttc
caactg

>gi568815588f:5997066_6215553|GENSCAN_predicted_peptide_2|196_aa
MVAGPAALRDTGCRREVSSKLEGLFLGVHGEVYPSSAEMDEREHREVDPNQYPAIPNPSP
CLPSECLDSTDDYHCGCTRTPHDDQDPHKEDKKFIQYQSGQYPKISITGRNAEASTTPLD
NRVMGAAEYMLPSGFQKLLVHPVKKPEVLLRCNTSQCAETALNVAPKNCKAILETVAQLP
IGVTNPSAKLCSKEKD

>gi568815588f:5997066_6215553|GENSCAN_predicted_CDS_2|591_bp
atggtggctgggcctgcggctctccgggacacagggtgcagaagagaggtcagcagcaag
ctggagggcctgtttcttggtgtccatggagaagtctatccgagcagtgctgagatggat
gaaagggaacacagagaggttgatcccaatcagtatcctgcaatcccaaatccatctcct
tgtctgccttctgagtgtctagacagcactgatgactatcactgtggctgcactaggacc
cctcatgatgaccaagatcctcataaagaggacaagaagttcatccagtaccagtcaggc
caatatcccaaaattagcataactggcagaaatgcagaggcatcaacaactcctcttgac
aacagggttatgggagcagcagagtacatgctgcccagcggcttccagaagctcctggtc
caccccgtcaagaagccggaggtcctgctgaggtgcaacacatctcagtgtgctgagact
gccctcaatgttgcccccaagaactgcaaagccatcctggaaacagtggcccagctgccc
attggagtcaccaatcccagtgccaagctgtgcagcaaagaaaaggattag

>gi568815588f:5997066_6215553|GENSCAN_predicted_peptide_3|616_aa
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKEGAHCLTWEVFLPKSFTLN
SIRPLTSRFQELQGIEEQAQLNNQSQRTKQSTVLAPVIDLKRGGSSDDRQIVDTPPHVAA
GLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQRQRELERQKEIEEREKR
RKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEED
SRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLGKH
EQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGE
VDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKENPNIPPPPP
CFLLPLPLSPHLQNEDCVDYKLDLCFHQASLIVQLRAVRPNVKYEYAHFTDGQTKVEKLH
ALPKATQMLNNNDDNGNDHNDDDNGNDHNDDDNDSMGAVSLRTGENSRKEPFSSCNEGNR
KLWPRHLLSPEPGHRPRLWRVRCSIPDGSANPTPSALFYRRMDLQRQPFLPGGFAFREGQ
HRTTLSYLTLTSILVG

>gi568815588f:5997066_6215553|GENSCAN_predicted_CDS_3|1851_bp
atgtccctgtacgatgacctaggagtggagaccagtgactcaaaaacagaaggctggtcc
aaaaacttcaaacttctgcagtctcagcttcaggtgaagaaggcagctctcactcaggca
aaggaaggggcacactgcctcacctgggaagtgttcctgcctaaaagctttaccctgaat
tcgatcaggcctttaacctccaggtttcaggaattacaaggcatagaggaacaagctcaa
ctaaataaccagagccaaaggacgaaacaaagtacagtcctcgccccagtcattgacctg
aagcgaggtggctcctcagatgaccggcaaattgtggacactccaccgcatgtagcagct
gggctgaaggatcctgttcccagtgggttttctgcaggggaagttctgattcccttagct
gacgaatatgaccctatgtttcctaatgattatgagaaagtagtgaagcgccaaagagag
gaacgacagagacagcgggagctggaaagacaaaaggaaatagaagaaagggaaaaaagg
cgtaaagacagacatgaagcaagtgggtttgcaaggagaccagatccagattctgatgaa
gatgaagattatgagcgagagaggaggaaaagaagtatgggcggagctgccattgcccca
cccacttctctggtagagaaagacaaagagttaccccgagattttccttatgaagaggac
tcaagacctcgatcacagtcttccaaagcagccattcctcccccagtgtacgaggaacaa
gacagaccgagatctccaaccggacctagcaactccttcctcgctaacatggggggcacg
gtggcgcacaagatcatgcagaagtacggcttccgggagggccagggtctggggaagcat
gagcagggcctgagcactgccttgtcagtggagaagaccagcaagcgtggcggcaagatc
atcgtgggcgacgccacagagaaagatgcatccaagaagtcagattcaaatccgctgact
gaaatacttaagtgtcctactaaagtggtcttactaaggaacatggttggtgcgggagag
gtggatgaagacttggaagttgaaaccaaggaagaatgtgaaaaatatggcaaagttgga
aaatgtgtgatatttgaaattcctggtgcccctgatgatgaagcagtacggatattttta
gaatttgagagagttgaatcagcaattaaagagaatcccaacatcccgcctccacctcct
tgcttcttactgcctcttccactcagcccacacttgcagaatgaggactgcgtcgactac
aaattagacctctgcttccaccaggcctccttgatagttcagctaagagccgtgcgacct
aatgtgaagtatgaatatgcccactttacagacggacaaactaaggtggaaaagttacat
gccttacccaaagccacacaaatgctaaacaataatgatgataatggcaatgatcataat
gatgatgataatggcaatgatcataatgatgatgataatgacagcatgggagccgtcagc
ctacgaactggagagaactccaggaaggagcccttttcttcctgcaatgagggcaaccgg
aagctgtggccacggcacctgctgtccccggagcctgggcaccgaccacggctgtggcga
gttcgttgttcaatcccggatggctcagcaaatccaaccccctccgccctgttctatcgc
cgcatggatctgcagaggcagccgttcctgccgggtggatttgccttccgcgaaggacaa
cacagaaccactctgagttatttgacactgacatcgatcctagttggctga

>gi568815588f:5997066_6215553|GENSCAN_predicted_peptide_4|806_aa
MLKLPQWTGKSSTRASHALSDPLFWCQARMNAGALPREGPVTKPQPGAGSTTVSRKPGDA
LACQLPPGFRCYMTVLASQKTSESRTQNQADVRLDRGPDVRAEQAYAAGATTPQTGRSSG
KKPLCKPEPPAGLQTEVNVQDLPLGLELHSHLGNEGLWSTGTQIFCTRLCVSSNGIFAAA
PDGPPPGAEIPTLAGERPPTPGTKEERGACAGARPGVSCAARGNVLWAKFRTLACAGLDV
CCEAHISRMSYASFAVLLLLVVSPQEDRAFLFLLLMDPGTSLAHSRGAPHSGQVGRSGKS
GTATHILEPSDSRLLSCPELTRESHQVAFYVQIAVQGQQAQCHRNRNTPDKRAPAPGFLG
GGRRQLQASKPRKRCCNHMHRTHKSCTQVDNLFLSAPSRLKAHHCPAPAAEDYRLRLDLL
WAAGKHKHDHQQRLWWDSFCCGNAQGPVHEDSDGATDPTHTRSSGSLCPTLGARSGPRVL
TGGASTADLPQPRIHARATPNAGTRKNTCRAYFLSGIIYSRSQAFSENILCRKHNPRERG
GYPPDFPFAPACLIGSFSTAVAGQASGTTSAASGEDFQNLIARGQYLKQTVTTADQLHPK
KAQLSVTPQTESTFRSYSWKGCLRKCQDDQTPLLFRHLVAAPTRTLDAPGATPPSSDPHT
RYHQDSYTLPVGSYGPRAPPPSGSLRVRSPGISAARGWSAAGSGNSLQVPPPARARGGGR
SRQRGRAGLEEGRPAAPQTRNLPALKLPPVLWTPRDRGKLVREETNSLFSFGLFRAILPE
GRDLREFHLIFTFMSYGHRGHARITS

>gi568815588f:5997066_6215553|GENSCAN_predicted_CDS_4|2421_bp
atgctaaaattaccccagtggacaggtaaatcctccacccgagcctctcacgccctgtct
gaccccctcttctggtgccaggctcggatgaatgctggggccctgccgagggaagggccg
gtcacgaagcctcagccaggggccggctccaccactgtctccaggaaacctggagatgct
cttgcctgccagctccctcctggcttccgctgctacatgacggtcttggcatctcagaaa
acctctgaaagccgcacacagaaccaggcagatgtcagactggacagaggccctgatgtc
cgagctgagcaggcttatgctgcgggagccaccacccctcagacgggccgcagctcagga
aagaagcccctctgtaagccggagcccccagcagggctccaaactgaagtcaatgtccag
gatctgccgctaggcctggagctgcactcacatctgggcaacgagggcctgtggtccacg
ggcacccagatcttctgcactcggctctgcgtcagttccaacggcatcttcgcggctgcg
cccgacggcccgcctcccggggccgagatcccgacgctggcaggagagcggccgccgacc
cccggaacaaaggaggagaggggggcgtgcgccggcgcgcggccgggcgtttcctgcgct
gccaggggaaacgtgctttgggctaagttccggaccctcgcctgtgcggggctcgacgtg
tgctgcgaggcccatatcagccgcatgtcctacgcctccttcgctgttctcttgttgctg
gttgtgtctccccaagaggacagggcatttttgtttctgttgctgatggaccctggaacc
agcctggcccacagcaggggcgccccacacagtggtcaggtgggcaggagcgggaagtca
ggcactgccacccacatcctggagcccagtgacagccgtctcctgtcctgtccggaactc
actcgtgagtcccaccaggtagcattttatgttcagattgcagtccaggggcagcaggcc
cagtgccacagaaacagaaacacgcctgacaagcgagccccagctcctggctttctcggc
gggggccgcaggcagctccaggcctccaagcccaggaagcggtgctgtaaccatatgcac
aggacacataaaagctgcacacaagtggacaacctcttcctgagcgccccctccaggctg
aaagcacaccactgcccggccccagcagctgaggactacaggttgcgcctcgacctcttg
tgggctgctggcaaacacaaacatgaccaccagcaacggctgtggtgggacagtttctgc
tgtggaaatgcccagggccctgttcatgaagattcggatggagccacagacccaacgcat
acgaggtcctcagggagtctgtgtcccacactgggggctaggagcggtccccgggtgctc
actggcggcgcctccaccgcggacctgccccagccccgcatccacgcgcgggccacaccc
aacgccgggacgcgcaaaaacacctgccgggcctatttcctctcgggtattatttacagc
cgctcccaggccttctcggaaaacatcctttgccggaaacacaaccccagggagcgggga
gggtaccctcccgacttcccgtttgcccctgcctgcctgattggatctttctccactgct
gtggctggacaagcctctgggacgacttcagcagcctcaggagaggacttccagaatctg
atcgccaggggtcagtatctcaagcagacagtcacgacagcagaccaactccaccctaag
aaagcacagttgtcagtcacccctcaaacagagagcaccttccggagctacagctggaaa
ggctgcttgcggaagtgccaggacgaccaaaccccgctgctcttcagacaccttgtggct
gccccaaccagaaccttggatgctcctggggccacgccccctagctcagacccgcacaca
agataccaccaagactcatacacactgccagtggggagctacggaccccgggccccgccg
ccctccgggtctctccgggtccggagccctggtatatctgcggcccggggctggagcgca
gcgggaagcgggaattcgctgcaagtgccgcccccggctcgggcacgtggtggcggccgg
agtcgccagaggggacgcgcgggtctggaggaggggcggcccgcagccccccagacgcgg
aacttgccggccttgaagctgccgcctgtcttgtggactccacgggacaggggaaaactg
gtccgggaagaaaccaactcccttttctctttcgggctgttccgagccatccttcccgaa
ggacgagacctgagggaattccatcttatttttacttttatgtcctacgggcacagggga
cacgctcgaatcaccagctga

>gi568815588f:5997066_6215553|GENSCAN_predicted_peptide_5|126_aa
MVATVLPPGQQTCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVLANIPL
LIALSTAYRRSRVFNPQAVDCYVGWPVRNLAAGVFNVGEYRREAVKQYSSYNFFRPDNEE
AMKVRN

>gi568815588f:5997066_6215553|GENSCAN_predicted_CDS_5|378_bp
atggtggccaccgtgctcccgcctgggcaacagacctgtgggccaaagctgaccaactcc
cccaccgtcatcgtcatggtgggcctccccgcccggggcaagacctacatctccaagaag
ctgactcgctacctcaactggattggcgtccccacaaaagtcctagctaacattcctctg
ctgatagccctaagcactgcctaccgtagatcaagggtcttcaacccccaggctgtggac
tgctatgttgggtggcctgttaggaacctggctgcaggagtgttcaacgtcggggagtat
cgccgggaggctgtgaagcagtacagctcctacaacttcttccgccccgacaatgaggaa
gccatgaaagtccggaan