FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0671, 258 aa
  1>>>pF1KE0671 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1259+/-0.00074; mu= 3.5846+/- 0.045
 mean_var=169.2488+/-34.359, 0's: 0 Z-trim(115.3): 26  B-trim: 8 in 1/52
 Lambda= 0.098585
 statistics sampled from 15863 (15883) to 15863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.488), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS2831.1 CISH gene_id:1154|Hs108|chr3            ( 258) 1763 261.7 3.6e-70
CCDS46834.1 CISH gene_id:1154|Hs108|chr3           ( 275) 1713 254.6 5.2e-68
CCDS9047.1 SOCS2 gene_id:8835|Hs108|chr12          ( 198)  397 67.4 8.8e-12


>>CCDS2831.1 CISH gene_id:1154|Hs108|chr3                 (258 aa)
 initn: 1763 init1: 1763 opt: 1763  Z-score: 1373.3  bits: 261.7 E(32554): 3.6e-70
Smith-Waterman score: 1763; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KE0 MVLCVQGPRPLLAVERTGQRPLWAPSLELPKPVMQPLPAGAFLEEVAEGTPAQTESEPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MVLCVQGPRPLLAVERTGQRPLWAPSLELPKPVMQPLPAGAFLEEVAEGTPAQTESEPKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LDPEEDLLCIAKTFSYLRESGWYWGSITASEARQHLQKMPEGTFLVRDSTHPSYLFTLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LDPEEDLLCIAKTFSYLRESGWYWGSITASEARQHLQKMPEGTFLVRDSTHPSYLFTLSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KTTRGPTNVRIEYADSSFRLDSNCLSRPRILAFPDVVSLVQHYVASCTADTRSDSPDPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 KTTRGPTNVRIEYADSSFRLDSNCLSRPRILAFPDVVSLVQHYVASCTADTRSDSPDPAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TPALPMPKEDAPSDPALPAPPPATAVHLKLVQPFVRRSSARSLQHLCRLVINRLVADVDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 TPALPMPKEDAPSDPALPAPPPATAVHLKLVQPFVRRSSARSLQHLCRLVINRLVADVDC
              190       200       210       220       230       240

              250        
pF1KE0 LPLPRRMADYLRQYPFQL
       ::::::::::::::::::
CCDS28 LPLPRRMADYLRQYPFQL
              250        

>>CCDS46834.1 CISH gene_id:1154|Hs108|chr3                (275 aa)
 initn: 1713 init1: 1713 opt: 1713  Z-score: 1334.5  bits: 254.6 E(32554): 5.2e-68
Smith-Waterman score: 1713; 100.0% identity (100.0% similar) in 251 aa overlap (8-258:25-275)

                                10        20        30        40   
pF1KE0                  MVLCVQGPRPLLAVERTGQRPLWAPSLELPKPVMQPLPAGAFL
                               ::::::::::::::::::::::::::::::::::::
CCDS46 MYLEHTSHCPHHDDDTAMDTPLPRPRPLLAVERTGQRPLWAPSLELPKPVMQPLPAGAFL
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KE0 EEVAEGTPAQTESEPKVLDPEEDLLCIAKTFSYLRESGWYWGSITASEARQHLQKMPEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EEVAEGTPAQTESEPKVLDPEEDLLCIAKTFSYLRESGWYWGSITASEARQHLQKMPEGT
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KE0 FLVRDSTHPSYLFTLSVKTTRGPTNVRIEYADSSFRLDSNCLSRPRILAFPDVVSLVQHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FLVRDSTHPSYLFTLSVKTTRGPTNVRIEYADSSFRLDSNCLSRPRILAFPDVVSLVQHY
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KE0 VASCTADTRSDSPDPAPTPALPMPKEDAPSDPALPAPPPATAVHLKLVQPFVRRSSARSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VASCTADTRSDSPDPAPTPALPMPKEDAPSDPALPAPPPATAVHLKLVQPFVRRSSARSL
              190       200       210       220       230       240

           230       240       250        
pF1KE0 QHLCRLVINRLVADVDCLPLPRRMADYLRQYPFQL
       :::::::::::::::::::::::::::::::::::
CCDS46 QHLCRLVINRLVADVDCLPLPRRMADYLRQYPFQL
              250       260       270     

>>CCDS9047.1 SOCS2 gene_id:8835|Hs108|chr12               (198 aa)
 initn: 540 init1: 383 opt: 397  Z-score: 325.0  bits: 67.4 E(32554): 8.8e-12
Smith-Waterman score: 519; 41.7% identity (65.4% similar) in 211 aa overlap (48-258:14-198)

        20        30        40        50        60        70       
pF1KE0 GQRPLWAPSLELPKPVMQPLPAGAFLEEVAEGTPAQTESEPKVLDPEEDLLCIAKTFSYL
                                     ::: .:  .  .. .:  .   .::..  :
CCDS90                  MTLRCLEPSGNGGEGTRSQWGTAGSAEEPSPQAARLAKALREL
                                10        20        30        40   

        80        90       100       110       120       130       
pF1KE0 RESGWYWGSITASEARQHLQKMPEGTFLVRDSTHPSYLFTLSVKTTRGPTNVRIEYADSS
        ..::::::.:..::...:.. ::::::.:::.: .::.:.::::. ::::.:::: :..
CCDS90 GQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGK
            50        60        70        80        90       100   

       140       150       160       170       180       190       
pF1KE0 FRLDSNCLSRPRILAFPDVVSLVQHYVASCTADTRSDSPDPAPTPALPMPKEDAPSDPAL
       :::::    . ..  : .:: :...::  :  : :.                        
CCDS90 FRLDSIICVKSKLKQFDSVVHLIDYYVQMCK-DKRTG-----------------------
           110       120       130                                 

       200       210       220       230       240       250       
pF1KE0 PAPPPATAVHLKLVQPFVRRSSARSLQHLCRLVINRLVADVDCLPLPRRMADYLRQYPFQ
       :  :   .::: :..:.   .:: ::::::::.::. .. .  :::: :. :::..: ::
CCDS90 PEAPRNGTVHLYLTKPL--YTSAPSLQHLCRLTINKCTGAIWGLPLPTRLKDYLEEYKFQ
     140       150         160       170       180       190       

        
pF1KE0 L
       .
CCDS90 V
        




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:08:27 2016 done: Wed Nov  2 18:08:28 2016
 Total Scan time:  2.110 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]