GENSCAN 1.0	Date run:  2-Nov-116	Time: 18:08:48

Sequence gi568815595r:50507610_50708594 : 200985 bp : 51.69% C+G : Isochore 3 (51 - 57 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 PlyA -   7945   7940    6                               1.05
 1.06 Term -  11106  10688  419  1  2   45   38   242 0.250  10.71
 1.05 Intr -  17565  17483   83  2  2   64   94    74 0.367   5.38
 1.04 Intr -  23224  22903  322  2  1   59   22   165 0.004   2.47
 1.03 Intr -  30387  30363   25  0  1   99  100    14 0.002   1.78
 1.02 Intr -  32047  31989   59  2  2   96   77     7 0.003  -0.51
 1.01 Init -  35532  35466   67  0  1   86   59    40 0.203   2.08
 1.00 Prom -  41055  41016   40                               1.49

 2.07 PlyA -  41095  41090    6                              -1.75
 2.06 Term -  43358  43222  137  0  2   75   47   152 0.043   8.29
 2.05 Intr -  49252  49164   89  0  2  102   18    24 0.002  -3.09
 2.04 Intr -  52128  52052   77  0  2  125   66    65 0.347   6.81
 2.03 Intr -  53455  53308  148  0  1   80   86   245 0.996  24.25
 2.02 Intr -  54138  54113   26  0  2  142   76    22 0.994   3.71
 2.01 Init -  58090  57857  234  1  0   75   77   158 0.808  11.59
 2.00 Prom -  60834  60795   40                              -5.71

 3.00 Prom +  60947  60986   40                              -8.38
 3.01 Init +  61199  61360  162  1  0   63   56    83 0.583   2.31
 3.02 Intr +  61771  61936  166  0  1   51   68    73 0.342   1.65
 3.03 Intr +  63113  63161   49  0  1   48  111    10 0.202  -2.47
 3.04 Intr +  64506  64599   94  0  1  119   92    67 0.608  10.67
 3.05 Intr +  69443  69577  135  1  0  102   99    62 0.899   9.97
 3.06 Intr +  69900  69964   65  2  2   61   92    81 0.971   3.81
 3.07 Intr +  70217  70266   50  2  2   92   80    29 0.915   1.31
 3.08 Intr +  71212  71317  106  2  1   77   48   179 0.995  12.57
 3.09 Intr +  72235  72354  120  1  0  121   48    86 0.572   8.01
 3.10 Intr +  72507  72620  114  0  0   67   94   113 0.909   9.87
 3.11 Intr +  73916  74065  150  2  0   47   95    57 0.704   2.09
 3.12 Intr +  76221  76332  112  0  1  104   63    34 0.136   3.38
 3.13 Term +  85080  85307  228  2  0   33   53   141 0.486   2.06
 3.14 PlyA +  87918  87923    6                               1.05

 4.06 PlyA -  89950  89945    6                               1.05
 4.05 Term - 100533  99998  536  1  2   52   42   628 0.999  49.41
 4.04 Intr - 100984 100764  221  0  2   95  105   227 0.982  23.57
 4.03 Intr - 102920 102764  157  0  1   89   86     8 0.667   0.28
 4.02 Intr - 104187 104022  166  0  1  102   86    15 0.754   2.75
 4.01 Init - 106518 106513    6  0  0   88   94     0 0.616   1.51
 4.00 Prom - 108878 108839   40                              -4.31

 5.00 Prom + 109099 109138   40                              -4.41
 5.01 Init + 109453 109632  180  0  0   62  101    93 0.617   5.16
 5.02 Intr + 109915 110175  261  0  0   36   86   299 0.559  22.72
 5.03 Intr + 132757 132896  140  0  2   69   68   187 0.988  14.57
 5.04 Intr + 134098 134162   65  1  2   87   87    32 0.495   1.85
 5.05 Intr + 134644 134723   80  2  2  127  100    94 0.999  14.27
 5.06 Intr + 136800 136923  124  2  1   75   92   119 0.993  11.66
 5.07 Intr + 138101 138176   76  0  1   85   76    82 0.998   5.77
 5.08 Intr + 138531 138655  125  0  2   70  101   193 0.999  19.53
 5.09 Intr + 139131 139216   86  1  2  107   66    77 0.997   7.44
 5.10 Intr + 139514 139594   81  1  0   43   98    84 0.966   5.23
 5.11 Term + 140285 140437  153  1  0   96   36   208 0.995  14.63
 5.12 PlyA + 141659 141664    6                               1.05

 6.07 PlyA - 143675 143670    6                              -0.45
 6.06 Term - 147425 147397   29  0  2  121   54    -1 0.004  -1.68
 6.05 Intr - 149488 149397   92  0  2  125   75   -11 0.005   1.44
 6.04 Intr - 159944 159863   82  0  1   79   94   111 0.672   9.99
 6.03 Intr - 162144 162090   55  0  1    5   76    45 0.064  -5.96
 6.02 Intr - 165936 165813  124  2  1   37   70    75 0.489   1.69
 6.01 Init - 167656 166863  794  1  2   82   75   327 0.534  23.09
 6.00 Prom - 175570 175531   40                              -1.71

 7.03 PlyA - 175848 175843    6                               1.05
 7.02 Term - 178187 177880  308  0  2   67   41   136 0.766   2.43
 7.01 Init - 180143 180089   55  2  1   88  101     2 0.587   2.89
 7.00 Prom - 185014 184975   40                              -0.31


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  28452  28541   90  1  0   88   82    63 0.889   6.16
S.002 Intr +  47050  47139   90  2  0   70  105    64 0.853   6.76
S.003 Init - 150135 150058   78  0  0   88  100    70 0.961   9.21


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:50507610_50708594|GENSCAN_predicted_peptide_1|324_aa
MGCGGEPHGTQSRSCKKKTSSISIVNSPVARAPPPSSLPAGQLLSTCELPTPDANGLLIQ
KHLDFKGGSGGGQALLKELQAQKSWDSTRTGCLPLLPALAAAPDDSGSWYYPPVYPTCSP
HPRALSPVPASLRPDVGTLRARGRPCRRRRVGQGHLDGDQGGKIKSSINPPEMEYLEHAQ
FYLPTALDEQPLTVHNAGSFWEAGCCAGQLYKASDGVFLKLDEHNMELPCASDVRRVQSV
GGGVLRDVANGVHPWMLLIDVVEVALAPSAKISAPSMRDLALAAEGTMDSAMIPPCLAPW
ESQSERGGSSRPRHTQYDVFDMDI

>gi568815595r:50507610_50708594|GENSCAN_predicted_CDS_1|975_bp
atggggtgtggaggagagcctcatgggactcaatccaggtcctgcaagaagaagaccagc
agcatttccatcgtcaactcccctgtggcccgggctccccctccctccagcctccccgca
ggtcagctactttctacctgtgagctccccaccccagacgctaatgggctcctcattcag
aagcacctggacttcaaaggaggctctggaggaggccaggcattactaaaggaattgcag
gcacagaagagttgggactccactagaactggctgccttcccctgctaccggctctcgca
gcagccccagacgactcaggctcctggtactacccccctgtgtacccgacgtgttctccc
cacccccgtgccctgtcccccgtccctgcgtccctgcgccccgatgttggcaccctgcgg
gcccgggggcggccgtgccggcgccgcagagtagggcagggccacctggacggtgatcaa
ggagggaagataaaatcctccataaatcccccagaaatggagtatctggagcatgctcaa
ttctacctgcccacagccttagatgagcagcccctcactgtgcacaatgcaggctccttc
tgggaagctgggtgttgtgctgggcaactatacaaggcatcagatggtgttttcctgaaa
cttgatgagcacaatatggagttgccatgtgccagtgatgtgcgccgggtgcagtctgtt
gggggtggggtgctcagggacgtggccaacggagtccacccttggatgctccttatagat
gtcgtggaagtagccttggctccatcagcaaaaatctctgccccttccatgagggacctt
gcactggccgctgagggcaccatggattcagcaatgattccaccctgccttgccccctgg
gagtcccagtctgagagaggaggcagttccagacccagacatacccagtacgatgtgttt
gacatggacatctag

>gi568815595r:50507610_50708594|GENSCAN_predicted_peptide_2|236_aa
MNSRTASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVG
TMLLSFGIITVIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRD
AASVQAATSVQAMQGKTTLPSQGPLQRPSRLVFTDVANAIHASYSQSCRKTKFPASSQVF
QSVGSINIGVKALLQQALCWALVLRGTQSVLDLEETHQQESQDGSIDSNDSTLRRK

>gi568815595r:50507610_50708594|GENSCAN_predicted_CDS_2|711_bp
atgaactccaggaccgcatctgctaggggctggttcagcagccgcccacccacctctgag
tctgacctggaacctgccacagatgggccagcctccgagaccactaccctcagcccagag
gccaccacctttaatgacaccagaatccctgatgcagctggtggcacggccggcgtgggt
accatgcttctgtcctttgggatcatcacggtgataggcctggctgtggccttggttttg
tacatcaggaagaagaagaggctggagaagctacgccaccagctcatgcccatgtacaac
ttcgaccccacggaggaacaagatgagttggagcaggagctgctggagcatgggcgggac
gccgcctctgtacaggctgctacttctgtgcaggccatgcagggcaagactactctgccc
tcccagggcccactgcagagacccagccggctggtgtttaccgatgtggccaatgccatc
catgcctcttattcccagtcctgcaggaaaaccaagttcccagcaagttcccaggtcttc
cagagtgtggggtcaataaatattggggtgaaagctcttctacagcaggccctctgctgg
gctttggtgctgaggggcacccagtcggttctggacttggaagagacccaccagcaggag
agccaggatggcagcattgacagcaacgacagcaccctcaggaggaagtga

>gi568815595r:50507610_50708594|GENSCAN_predicted_peptide_3|516_aa
MLTRHTLRDAAEYFIEGATEVQRSQHLEELPIESRFESVKERPLGSGRQSADPLGSPGRN
PPAIGTLKLGYGVRPSLFLKAPTPEAGRPRERATGHARPGVQFGAASPAETELWAQPTPA
KNVKKTMPVQYILGEWDFQGLSLRMVPPVFIPRPETEELVEWVLEEVAQRSHAVGSPGSP
LILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIWIIHLDMTS
ERSWTHLPWGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILALA
PRLLKDSGYEWDGSPSSIFLEVDPRHPELVSSWLQSRPDLYLNLVAVRRDFCGSGTLGNS
FPYEKLALLSPGPTPTGNLFTLSQVECACWHLNVHSPGMESKRSPYLCWHLLYHAFRNLL
IPLISGAPCGSGIPKFSKCLSWGGPWSWKRKQSLCQSHHLPPTLLLLRRPNKVLCALQGQ
RRLLAVAVGGDLEHCARGKAGPVEFAIPAFIYSSVP

>gi568815595r:50507610_50708594|GENSCAN_predicted_CDS_3|1551_bp
atgttgacaagacacactttgcgagacgctgccgagtattttatagaaggcgcaactgag
gtccagaggtcccaacacctggaggagttgccaatagagtcaagattcgaatcggtaaaa
gagcggcccctggggtctggccgccagtcggccgaccccctggggtctcctgggaggaac
ccaccagcgataggaacactgaagctgggctacggcgtccgcccgagccttttcttaaag
gcgccgaccccggaagcggggcgtccgagggagcgcgcgacgggccacgcacgtccgggc
gtccagttcggggcagcttctccggctgagactgagctatgggctcagcccactccagct
aaaaatgtgaagaaaacgatgccggtgcagtacatccttggagagtgggacttccagggg
ctcagcctaaggatggtgcccccagtgtttattcctcggccagaaacagaggaactggtt
gagtgggtgctggaagaggtggcccagaggtcccatgctgtgggatccccaggcagcccc
ctcattctggaggtgggctgcggatcaggagccatctccctcagcctgctgagccagctc
ccccagagccgagtcattgctgtggataagcgggaagctgctatctctctgacccatgag
aatgctcagaggcttcggttgcaggacaggatttggatcatccacctcgacatgacctca
gaaaggagctggacacacctgccctggggccccatggacctgattgtcagcaaccctccc
tacgtcttccaccaggacatggagcagctggcccctgagatccgcagctatgaagacccc
gcggccctggatggtggggaggagggcatggacatcattacccacattctggccttggca
ccccggctcctgaaagactctgggtatgaatgggatgggtctcctagtagtatcttctta
gaagtggacccaaggcacccggagcttgtcagcagctggcttcagagccggcctgacctg
taccttaatcttgtggctgtgcgcagggacttctgtgggagtgggaccttgggcaactcc
tttccctatgagaagctggctcttctgagtccagggccaacgccaactggcaacctcttt
actcttagtcaagtggaatgtgcatgctggcatctgaatgtccattcgccaggcatggag
agcaagagaagcccatacctctgctggcaccttctgtaccatgccttcagaaaccttctt
atccccctcatctctggggccccctgtggatctggcatacccaagttcagtaaatgtcta
tcatggggtgggccctggagctggaagaggaaacagagcctctgccagagtcaccacctg
cccccaaccctacttctcctccgaaggcccaacaaggtcctgtgcgccctccaagggcag
aggaggctgctggctgtggctgtgggaggagacctggagcactgtgcccgaggcaaagct
ggccccgtggagtttgctattccagcttttatttactcctctgtaccctga

>gi568815595r:50507610_50708594|GENSCAN_predicted_peptide_4|361_aa
MQAVRATASQSLSCARAPREPTQHALRAHWFPPAAAVQPSPHSGVAAAAGTWSSAFRGEH
PLVSSGLLLGVREQSFRLLRSKAGTHMYLEHTSHCPHHDDDTAMDTPLPRPRPLLAVERT
GQRPLWAPSLELPKPVMQPLPAGAFLEEVAEGTPAQTESEPKVLDPEEDLLCIAKTFSYL
RESGWYWGSITASEARQHLQKMPEGTFLVRDSTHPSYLFTLSVKTTRGPTNVRIEYADSS
FRLDSNCLSRPRILAFPDVVSLVQHYVASCTADTRSDSPDPAPTPALPMPKEDAPSDPAL
PAPPPATAVHLKLVQPFVRRSSARSLQHLCRLVINRLVADVDCLPLPRRMADYLRQYPFQ
L

>gi568815595r:50507610_50708594|GENSCAN_predicted_CDS_4|1086_bp
atgcaggcggtccgcgccactgcctctcagtccctgtcctgcgcccgcgcgccccgggag
cctacccagcacgcgctccgcgcccactggttccctccagccgccgccgtccagccgagt
ccccactccggagtcgccgctgccgcggggacatggtcctctgcgttcaggggtgagcac
ccccttgtaagctcagggctactgttgggtgtcagggaacaaagttttagactgctgcgc
tccaaagcgggcacacacatgtacctagaacacaccagccactgtccccaccatgatgat
gacacagccatggacacacccctgcccagacctcgtcctttgctggctgtggagcggact
gggcagcggcccctgtgggccccgtccctggaactgcccaagccagtcatgcagcccttg
cctgctggggccttcctcgaggaggtggcagagggtaccccagcccagacagagagtgag
ccaaaggtgctggacccagaggaggatctgctgtgcatagccaagaccttctcctacctt
cgggaatctggctggtattggggttccattacggccagcgaggcccgacaacacctgcag
aagatgccagaaggcacgttcttagtacgtgacagcacgcaccccagctacctgttcacg
ctgtcagtgaaaaccactcgtggccccaccaatgtacgcattgagtatgccgactccagc
ttccgtctggactccaactgcttgtccaggccacgcatcctggcctttccggatgtggtc
agccttgtgcagcactatgtggcctcctgcactgctgatacccgaagcgacagccccgat
cctgctcccaccccggccctgcctatgcctaaggaggatgcgcctagtgacccagcactg
cctgctcctccaccagccactgctgtacacctaaaactggtgcagccctttgtacgcaga
agcagtgcccgcagcctgcaacacctgtgccgccttgtcatcaaccgtctggtggccgac
gtggactgcctgccactgccccggcgcatggccgactacctccgacagtaccccttccag
ctctga

>gi568815595r:50507610_50708594|GENSCAN_predicted_peptide_5|456_aa
MTRRERGVEWGSGGGGGGEGGEVTWAPAARLSALGFLRPPAPATASPAPRRYLSKVRCRQ
KRQAGAASERPAGAMDGETAEEQGGPVPPPVAPGGPGLGGAPGGRREPKKYAVTDDYQLS
KQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYEN
MHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRD
VKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMW
SLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLK
TDPTERLTITQFMNHPWINQSMVVPQTPLHTARVLQEDKDHWDEVKEEMTSALATMRVDY
DQVKIKDLKTSNNRLLNKRRKKQAGSSSASQGCNNQ

>gi568815595r:50507610_50708594|GENSCAN_predicted_CDS_5|1371_bp
atgacgcgcagggagcggggggtggagtgggggagtgggggaggggggggtggggagggg
ggggaggtcacgtgggcgccggcagcgcgactctcggccctgggatttctgcggccgcca
gctcccgcgaccgcctctcctgcccctcgccggtacctcagcaaggtgcgttgccgccag
aagcgccaggctggggccgcctctgagcgccccgcgggggccatggatggtgaaacagca
gaggagcaggggggccctgtgcccccgccagttgcacccggcggacccggcttgggcggt
gctccgggggggcggcgggagcccaagaagtacgcagtgaccgacgactaccagttgtcc
aagcaggtgctgggcctgggtgtgaacggcaaagtgctggagtgcttccatcggcgcact
ggacagaagtgtgccctgaagctcctgtatgacagccccaaggcccggcaggaggtagac
catcactggcaggcttctggcggcccccatattgtctgcatcctggatgtgtatgagaac
atgcaccatggcaagcgctgtctcctcatcatcatggaatgcatggaaggtggtgagttg
ttcagcaggattcaggagcgtggcgaccaggctttcactgagagagaagctgcagagata
atgcgggatattggcactgccatccagtttctgcacagccataacattgcccaccgagat
gtcaagcctgaaaacctactctacacatctaaggagaaagacgcagtgcttaagctcacc
gattttggctttgctaaggagaccacccaaaatgccctgcagacaccctgctatactccc
tattatgtggcccctgaggtcctgggtccagagaagtatgacaagtcatgtgacatgtgg
tccctgggtgtcatcatgtacatcctcctttgtggcttcccacccttctactccaacacg
ggccaggccatctccccggggatgaagaggaggattcgcctgggccagtacggcttcccc
aatcctgagtggtcagaagtctctgaggatgccaagcagctgatccgcctcctgttgaag
acagaccccacagagaggctgaccatcactcagttcatgaaccacccctggatcaaccaa
tcgatggtagtgccacagaccccactccacacggcccgagtgctgcaggaggacaaagac
cactgggacgaagtcaaggaggagatgaccagtgccttggccactatgcgggtagactac
gaccaggtgaagatcaaggacctgaagacctctaacaaccggctcctcaacaagaggaga
aaaaagcaggcaggcagctcctctgcctcacagggctgcaacaaccagtag

>gi568815595r:50507610_50708594|GENSCAN_predicted_peptide_6|391_aa
MAVPGAAPRARRPGDNAAGTAAGPAVAHRESRRGRSGGAGQWAAHPSQAVRDAAATPATS
GPRGSAGGPAAPGGAGEGSPPVRRRCSRAAACFFTAPPPGSRRRRGSARPSGLAGRPRMR
HSLPRRGSRCPGSRRPEPARESTRRCCAPAEGNPREAIGLPGPGPASRIAGPGPSAAANP
GGGEAGQVGDSLYPDSPLASASSASCLRPEMATGLLVGEGRSRKGGHDTIFRPIPVSPTV
LSERSPEPPCAFPGPAGWSRHEGTRGSRGVQEHNERANCSKKIDPSPVATMEVFYGMKPH
SYKTLQAQKRKTAQNSTDIPNQDRGGNQNGFYIRDASEDNACKVLNTEPGTRAWKLAACS
FPKPPFTHARHPNLLQAALPASGKHSDFKAS

>gi568815595r:50507610_50708594|GENSCAN_predicted_CDS_6|1176_bp
atggccgtgccgggcgcggccccgcgggcgcggcgaccgggcgacaacgcggcggggacg
gccgcgggcccggctgtggcgcaccgcgagtcgaggcggggacggtcaggcggcgcgggg
cagtgggcggcgcatccctcacaggccgtccgggatgccgccgccacccccgccacgtct
ggaccgcgaggctccgcgggtggcccagcagcccctggcggcgcgggcgaaggctcgcca
cctgtccgtcgccgctgctcccgtgccgccgcttgcttcttcacagctccgccgcccggc
tcccggcgccgccgcggctcggctcgccccagcgggctcgcaggacgcccgcgcatgcgc
cactccctgccgcgcaggggctcgcgctgcccgggctcgcgccgtcccgagcccgcgcgc
gaatccacgcgccgctgctgcgcgccagcggagggaaatccgcgagaagctattggactg
cccggccccggaccggcttctagaatcgctggtccggggccctcagctgcagcaaacccc
ggagggggcgaagccggtcaggtgggcgactccctctacccggactccccactcgcttcc
gcttccagtgcctcctgcctgcgccccgagatggccacaggcctcctggtcggagagggg
agatccagaaaaggaggacacgacaccattttcagacccatcccagtgtcacccacagtg
ctgtcggaaaggtccccggagccaccctgtgcattcccagggcccgcaggatggagtcgc
cacgagggaaccaggggtagcaggggtgtccaagaacataacgaaagagctaactgttcc
aagaagatagacccctccccggtggccaccatggaagtattctatggaatgaagccacat
tcttacaaaactctccaggcccaaaagagaaaaacagcccaaaatagcacagatattcca
aatcaggacagaggtgggaatcagaatggcttctacatcagggatgcttctgaggataat
gcctgcaaagttctcaacacagagcccggcacaagagcgtggaaactggccgcctgctcc
ttccctaaaccccctttcacacatgcacggcatcctaacctcctccaggcagccctccca
gcttcagggaagcactctgactttaaagcatcctga

>gi568815595r:50507610_50708594|GENSCAN_predicted_peptide_7|120_aa
MTGQLSNFTTQVKEVTSECHGQPLSHVSFELFADKVPKTAENFHALTTGEKGFDNKGSSF
HIIIPGFLCQSGDLTCHNGVASPATRRSDENFILKHTLTGTSNFPIDVSEEETNIPVLTS

>gi568815595r:50507610_50708594|GENSCAN_predicted_CDS_7|363_bp
atgactggacagctttctaatttcactactcaggtcaaagaggtcacttcagaatgccat
ggacagcccttgagccacgtctcctttgagctgtttgcagacaaagttccaaagacagca
gaaaacttccatgctctaaccactggagaaaaaggatttgataataagggttccagcttt
catataattattccagggtttttgtgtcagagtggtgacttaacatgccataatggtgtg
gcaagtccagctacaaggagatctgatgagaacttcatcctgaagcatacactcactgga
actagcaattttcctatagatgtcagtgaggaagaaacaaatatccctgtattaacatca
taa