Result of FASTA (omim) for pF1KE0654
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0654, 386 aa
  1>>>pF1KE0654 386 - 386 aa - 386 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4718+/-0.000484; mu= 19.5749+/- 0.031
 mean_var=249.4687+/-58.561, 0's: 0 Z-trim(115.7): 364  B-trim: 1650 in 1/58
 Lambda= 0.081202
 statistics sampled from 25785 (26333) to 25785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.309), width:  16
 Scan time:  6.350

The best scores are:                                      opt bits E(85289)
NP_071505 (OMIM: 603518,604454) nucleolysin TIA-1  ( 386) 2691 328.9 1.3e-89
XP_011531379 (OMIM: 603518,604454) PREDICTED: nucl ( 385) 2672 326.6   6e-89
XP_016860278 (OMIM: 603518,604454) PREDICTED: nucl ( 349) 2442 299.6 7.4e-81
XP_005264585 (OMIM: 603518,604454) PREDICTED: nucl ( 321) 2246 276.6 5.9e-74
XP_005264588 (OMIM: 603518,604454) PREDICTED: nucl ( 285) 2015 249.4 7.8e-66
XP_016860284 (OMIM: 603518,604454) PREDICTED: nucl ( 285) 2015 249.4 7.8e-66
XP_016860280 (OMIM: 603518,604454) PREDICTED: nucl ( 310) 2010 248.9 1.2e-65
XP_016860279 (OMIM: 603518,604454) PREDICTED: nucl ( 338) 2010 249.0 1.3e-65
NP_071320 (OMIM: 603518,604454) nucleolysin TIA-1  ( 375) 2010 249.0 1.3e-65
XP_005264584 (OMIM: 603518,604454) PREDICTED: nucl ( 374) 1991 246.8 6.2e-65
XP_016860282 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_016860283 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_011531384 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_016860281 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_011531383 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_011531380 (OMIM: 603518,604454) PREDICTED: nucl ( 286) 1806 224.9 1.8e-58
XP_016860286 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860285 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860289 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860287 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
XP_016860288 (OMIM: 603518,604454) PREDICTED: nucl ( 246) 1762 219.7 6.1e-57
NP_001029097 (OMIM: 603413) nucleolysin TIAR isofo ( 392) 1697 212.4 1.5e-54
NP_001310898 (OMIM: 603413) nucleolysin TIAR isofo ( 336) 1516 191.1 3.3e-48
NP_001310899 (OMIM: 603413) nucleolysin TIAR isofo ( 353) 1516 191.1 3.4e-48
NP_003243 (OMIM: 603413) nucleolysin TIAR isoform  ( 375) 1516 191.2 3.5e-48
NP_001310897 (OMIM: 603413) nucleolysin TIAR isofo ( 360) 1497 188.9 1.6e-47
NP_001310893 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1320 167.9 2.4e-41
NP_001310894 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1320 167.9 2.4e-41
XP_016872095 (OMIM: 603413) PREDICTED: nucleolysin ( 252) 1320 167.9 2.4e-41
NP_001310896 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 1320 167.9 2.4e-41
NP_112241 (OMIM: 604680) polyadenylate-binding pro ( 631)  413 62.4 3.5e-09
NP_001229528 (OMIM: 604739) RNA-binding protein 39 ( 508)  287 47.4 8.7e-05
NP_001310353 (OMIM: 604739) RNA-binding protein 39 ( 529)  287 47.5 8.9e-05
NP_909122 (OMIM: 604739) RNA-binding protein 39 is ( 530)  287 47.5 8.9e-05
XP_016868729 (OMIM: 604819,615583) PREDICTED: poly ( 499)  282 46.8 0.00013
NP_001258029 (OMIM: 604819,615583) poly(U)-binding ( 499)  282 46.8 0.00013
NP_001258026 (OMIM: 604819,615583) poly(U)-binding ( 513)  282 46.9 0.00013
NP_001129505 (OMIM: 604819,615583) poly(U)-binding ( 516)  282 46.9 0.00013
XP_016868728 (OMIM: 604819,615583) PREDICTED: poly ( 516)  282 46.9 0.00013
NP_001258028 (OMIM: 604819,615583) poly(U)-binding ( 530)  282 46.9 0.00013
NP_001258025 (OMIM: 604819,615583) poly(U)-binding ( 541)  282 46.9 0.00013
NP_055096 (OMIM: 604819,615583) poly(U)-binding-sp ( 542)  282 46.9 0.00013
NP_001258027 (OMIM: 604819,615583) poly(U)-binding ( 558)  282 46.9 0.00014
NP_510965 (OMIM: 604819,615583) poly(U)-binding-sp ( 559)  282 46.9 0.00014
XP_016868725 (OMIM: 604819,615583) PREDICTED: poly ( 579)  282 47.0 0.00014
XP_011515232 (OMIM: 604819,615583) PREDICTED: poly ( 579)  282 47.0 0.00014
XP_016868724 (OMIM: 604819,615583) PREDICTED: poly ( 584)  282 47.0 0.00014
XP_016868726 (OMIM: 604819,615583) PREDICTED: poly ( 596)  282 47.0 0.00014
XP_016868723 (OMIM: 604819,615583) PREDICTED: poly ( 596)  282 47.0 0.00014
XP_011515231 (OMIM: 604819,615583) PREDICTED: poly ( 596)  282 47.0 0.00014


>>NP_071505 (OMIM: 603518,604454) nucleolysin TIA-1 isof  (386 aa)
 initn: 2691 init1: 2691 opt: 2691  Z-score: 1729.9  bits: 328.9 E(85289): 1.3e-89
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
              310       320       330       340       350       360

              370       380      
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
       ::::::::::::::::::::::::::
NP_071 QPPQGQNGSMLPNQPSGYRVAGYETQ
              370       380      

>>XP_011531379 (OMIM: 603518,604454) PREDICTED: nucleoly  (385 aa)
 initn: 2036 init1: 2001 opt: 2672  Z-score: 1717.9  bits: 326.6 E(85289): 6e-89
Smith-Waterman score: 2672; 99.7% identity (99.7% similar) in 386 aa overlap (1-386:1-385)

               10        20        30        40        50        60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_011 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQ-NQI
              250       260       270       280       290          

              310       320       330       340       350       360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
     300       310       320       330       340       350         

              370       380      
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
       ::::::::::::::::::::::::::
XP_011 QPPQGQNGSMLPNQPSGYRVAGYETQ
     360       370       380     

>>XP_016860278 (OMIM: 603518,604454) PREDICTED: nucleoly  (349 aa)
 initn: 2442 init1: 2442 opt: 2442  Z-score: 1572.6  bits: 299.6 E(85289): 7.4e-81
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 349 aa overlap (38-386:1-349)

        10        20        30        40        50        60       
pF1KE0 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN
                                     ::::::::::::::::::::::::::::::
XP_016                               MIMDTAGNDPYCFVEFHEHRHAAAALAAMN
                                             10        20        30

        70        80        90       100       110       120       
pF1KE0 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA
               40        50        60        70        80        90

       130       140       150       160       170       180       
pF1KE0 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
              100       110       120       130       140       150

       190       200       210       220       230       240       
pF1KE0 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
              160       170       180       190       200       210

       250       260       270       280       290       300       
pF1KE0 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
              220       230       240       250       260       270

       310       320       330       340       350       360       
pF1KE0 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
              280       290       300       310       320       330

       370       380      
pF1KE0 GSMLPNQPSGYRVAGYETQ
       :::::::::::::::::::
XP_016 GSMLPNQPSGYRVAGYETQ
              340         

>>XP_005264585 (OMIM: 603518,604454) PREDICTED: nucleoly  (321 aa)
 initn: 2246 init1: 2246 opt: 2246  Z-score: 1448.8  bits: 276.6 E(85289): 5.9e-74
Smith-Waterman score: 2246; 100.0% identity (100.0% similar) in 321 aa overlap (66-386:1-321)

          40        50        60        70        80        90     
pF1KE0 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST
                                     ::::::::::::::::::::::::::::::
XP_005                               MNGRKIMGKEVKVNWATTPSSQKKDTSSST
                                             10        20        30

         100       110       120       130       140       150     
pF1KE0 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
               40        50        60        70        80        90

         160       170       180       190       200       210     
pF1KE0 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
              100       110       120       130       140       150

         220       230       240       250       260       270     
pF1KE0 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
              160       170       180       190       200       210

         280       290       300       310       320       330     
pF1KE0 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
              220       230       240       250       260       270

         340       350       360       370       380      
pF1KE0 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
              280       290       300       310       320 

>>XP_005264588 (OMIM: 603518,604454) PREDICTED: nucleoly  (285 aa)
 initn: 2015 init1: 2015 opt: 2015  Z-score: 1302.9  bits: 249.4 E(85289): 7.8e-66
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 284 aa overlap (103-386:2-285)

             80        90       100       110       120       130  
pF1KE0 GKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
                                     ::::::::::::::::::::::::::::::
XP_005                              MQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
                                            10        20        30 

            140       150       160       170       180       190  
pF1KE0 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
              40        50        60        70        80        90 

            200       210       220       230       240       250  
pF1KE0 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
             100       110       120       130       140       150 

            260       270       280       290       300       310  
pF1KE0 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
             160       170       180       190       200       210 

            320       330       340       350       360       370  
pF1KE0 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
             220       230       240       250       260       270 

            380      
pF1KE0 NQPSGYRVAGYETQ
       ::::::::::::::
XP_005 NQPSGYRVAGYETQ
             280     

>>XP_016860284 (OMIM: 603518,604454) PREDICTED: nucleoly  (285 aa)
 initn: 2015 init1: 2015 opt: 2015  Z-score: 1302.9  bits: 249.4 E(85289): 7.8e-66
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 284 aa overlap (103-386:2-285)

             80        90       100       110       120       130  
pF1KE0 GKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
                                     ::::::::::::::::::::::::::::::
XP_016                              MQDHFHVFVGDLSPEITTEDIKAAFAPFGRI
                                            10        20        30 

            140       150       160       170       180       190  
pF1KE0 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST
              40        50        60        70        80        90 

            200       210       220       230       240       250  
pF1KE0 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS
             100       110       120       130       140       150 

            260       270       280       290       300       310  
pF1KE0 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQW
             160       170       180       190       200       210 

            320       330       340       350       360       370  
pF1KE0 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLP
             220       230       240       250       260       270 

            380      
pF1KE0 NQPSGYRVAGYETQ
       ::::::::::::::
XP_016 NQPSGYRVAGYETQ
             280     

>>XP_016860280 (OMIM: 603518,604454) PREDICTED: nucleoly  (310 aa)
 initn: 2004 init1: 2004 opt: 2010  Z-score: 1299.5  bits: 248.9 E(85289): 1.2e-65
Smith-Waterman score: 2147; 96.3% identity (96.6% similar) in 321 aa overlap (66-386:1-310)

          40        50        60        70        80        90     
pF1KE0 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST
                                     :::::::::::::::::::::::::::   
XP_016                               MNGRKIMGKEVKVNWATTPSSQKKDTS---
                                             10        20          

         100       110       120       130       140       150     
pF1KE0 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
               .:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 --------NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF
                30        40        50        60        70         

         160       170       180       190       200       210     
pF1KE0 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT
      80        90       100       110       120       130         

         220       230       240       250       260       270     
pF1KE0 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIE
     140       150       160       170       180       190         

         280       290       300       310       320       330     
pF1KE0 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMY
     200       210       220       230       240       250         

         340       350       360       370       380      
pF1KE0 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ
     260       270       280       290       300       310

>>XP_016860279 (OMIM: 603518,604454) PREDICTED: nucleoly  (338 aa)
 initn: 2004 init1: 2004 opt: 2010  Z-score: 1299.2  bits: 249.0 E(85289): 1.3e-65
Smith-Waterman score: 2343; 96.6% identity (96.8% similar) in 349 aa overlap (38-386:1-338)

        10        20        30        40        50        60       
pF1KE0 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN
                                     ::::::::::::::::::::::::::::::
XP_016                               MIMDTAGNDPYCFVEFHEHRHAAAALAAMN
                                             10        20        30

        70        80        90       100       110       120       
pF1KE0 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA
       :::::::::::::::::::::::::           .:::::::::::::::::::::::
XP_016 GRKIMGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEITTEDIKAAFA
               40        50                   60        70         

       130       140       150       160       170       180       
pF1KE0 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP
      80        90       100       110       120       130         

       190       200       210       220       230       240       
pF1KE0 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP
     140       150       160       170       180       190         

       250       260       270       280       290       300       
pF1KE0 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYG
     200       210       220       230       240       250         

       310       320       330       340       350       360       
pF1KE0 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGVQPPQGQN
     260       270       280       290       300       310         

       370       380      
pF1KE0 GSMLPNQPSGYRVAGYETQ
       :::::::::::::::::::
XP_016 GSMLPNQPSGYRVAGYETQ
     320       330        

>>NP_071320 (OMIM: 603518,604454) nucleolysin TIA-1 isof  (375 aa)
 initn: 2004 init1: 2004 opt: 2010  Z-score: 1298.8  bits: 249.0 E(85289): 1.3e-65
Smith-Waterman score: 2592; 96.9% identity (97.2% similar) in 386 aa overlap (1-386:1-375)

               10        20        30        40        50        60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
       ::::::::::::::::::::::::::::::::           .::::::::::::::::
NP_071 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEITTE
               70        80        90                  100         

              130       140       150       160       170       180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
     290       300       310       320       330       340         

              370       380      
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
       ::::::::::::::::::::::::::
NP_071 QPPQGQNGSMLPNQPSGYRVAGYETQ
     350       360       370     

>>XP_005264584 (OMIM: 603518,604454) PREDICTED: nucleoly  (374 aa)
 initn: 1384 init1: 1314 opt: 1991  Z-score: 1286.8  bits: 246.8 E(85289): 6.2e-65
Smith-Waterman score: 2573; 96.6% identity (96.9% similar) in 386 aa overlap (1-386:1-374)

               10        20        30        40        50        60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
       ::::::::::::::::::::::::::::::::           .::::::::::::::::
XP_005 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEITTE
               70        80        90                  100         

              130       140       150       160       170       180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_005 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQ-NQI
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
      290       300       310       320       330       340        

              370       380      
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
       ::::::::::::::::::::::::::
XP_005 QPPQGQNGSMLPNQPSGYRVAGYETQ
      350       360       370    




386 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:46:17 2016 done: Wed Nov  2 18:46:18 2016
 Total Scan time:  6.350 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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