Result of FASTA (ccds) for pF1KE0654
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0654, 386 aa
  1>>>pF1KE0654 386 - 386 aa - 386 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3105+/-0.00112; mu= 13.1476+/- 0.067
 mean_var=151.0317+/-31.836, 0's: 0 Z-trim(108.1): 174  B-trim: 471 in 1/51
 Lambda= 0.104361
 statistics sampled from 9796 (10010) to 9796 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.307), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS1901.1 TIA1 gene_id:7072|Hs108|chr2            ( 386) 2691 417.2 1.2e-116
CCDS1900.1 TIA1 gene_id:7072|Hs108|chr2            ( 375) 2010 314.7 8.7e-86
CCDS31295.1 TIAL1 gene_id:7073|Hs108|chr10         ( 392) 1697 267.6 1.4e-71
CCDS7613.1 TIAL1 gene_id:7073|Hs108|chr10          ( 375) 1516 240.3 2.1e-63
CCDS9311.1 PABPC3 gene_id:5042|Hs108|chr13         ( 631)  413 74.5   3e-13


>>CCDS1901.1 TIA1 gene_id:7072|Hs108|chr2                 (386 aa)
 initn: 2691 init1: 2691 opt: 2691  Z-score: 2207.6  bits: 417.2 E(32554): 1.2e-116
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:1-386)

               10        20        30        40        50        60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
              310       320       330       340       350       360

              370       380      
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
       ::::::::::::::::::::::::::
CCDS19 QPPQGQNGSMLPNQPSGYRVAGYETQ
              370       380      

>>CCDS1900.1 TIA1 gene_id:7072|Hs108|chr2                 (375 aa)
 initn: 2004 init1: 2004 opt: 2010  Z-score: 1653.6  bits: 314.7 E(32554): 8.7e-86
Smith-Waterman score: 2592; 96.9% identity (97.2% similar) in 386 aa overlap (1-386:1-375)

               10        20        30        40        50        60
pF1KE0 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE
       ::::::::::::::::::::::::::::::::           .::::::::::::::::
CCDS19 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEITTE
               70        80        90                  100         

              130       140       150       160       170       180
pF1KE0 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KE0 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQI
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KE0 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KE0 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 GYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV
     290       300       310       320       330       340         

              370       380      
pF1KE0 QPPQGQNGSMLPNQPSGYRVAGYETQ
       ::::::::::::::::::::::::::
CCDS19 QPPQGQNGSMLPNQPSGYRVAGYETQ
     350       360       370     

>>CCDS31295.1 TIAL1 gene_id:7073|Hs108|chr10              (392 aa)
 initn: 1637 init1: 1163 opt: 1697  Z-score: 1398.7  bits: 267.6 E(32554): 1.4e-71
Smith-Waterman score: 1962; 74.0% identity (84.1% similar) in 408 aa overlap (1-386:2-392)

                 10        20        30        40                  
pF1KE0  MEDE-MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD---------TAG-----
        :::. .:.:::::::::::::.:::::::::::::.:::: .         ..:     
CCDS31 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KE0 ---NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQR
          :::::::::.::: :::::::::::::.::::::::::::::::::::         
CCDS31 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTS---------
               70        80        90       100       110          

             110       120       130       140       150       160 
pF1KE0 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE
         .:::::::::::::::::::.::::::.:::::::::::::::::::::::.:: :::
CCDS31 --NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE
               120       130       140       150       160         

             170       180       190       200       210       220 
pF1KE0 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV
       ::: .:::::::::::::::::::::::::: :.::::: ...:::::::.::::::::.
CCDS31 NAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGI
     170       180       190       200       210       220         

             230       240       250       260       270       280 
pF1KE0 TSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC
       .::::.::::::::::::::::::::.::::::::..:::::::::::::::::::::::
CCDS31 ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC
     230       240       250       260       270       280         

             290       300       310       320       330       340 
pF1KE0 YWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQ
       :::::. :: .  :   :. : : .:::.: ::: :: :::: :::::: ::.::: :::
CCDS31 YWGKESPDMTKNFQ---QVDYSQ-WGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQ
     290       300           310       320       330       340     

              350       360       370          380      
pF1KE0 QGFNQTQS-SAPWMGPNYGVQPPQGQNGSML---PNQPSGYRVAGYETQ
       :::.  :: :: ::: ..:.::::::    .   ::: .:: .:.:.::
CCDS31 QGFGVDQSPSAAWMG-GFGAQPPQGQAPPPVIPPPNQ-AGYGMASYQTQ
         350       360        370       380        390  

>>CCDS7613.1 TIAL1 gene_id:7073|Hs108|chr10               (375 aa)
 initn: 1450 init1: 1163 opt: 1516  Z-score: 1251.6  bits: 240.3 E(32554): 2.1e-63
Smith-Waterman score: 2004; 77.0% identity (87.5% similar) in 391 aa overlap (1-386:2-375)

                 10        20        30        40        50        
pF1KE0  MEDE-MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRH
        :::. .:.:::::::::::::.:::::::::::::.:::: . ..:::::::::.::: 
CCDS76 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE0 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT
       :::::::::::::.::::::::::::::::::::           .::::::::::::::
CCDS76 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEIT
               70        80        90                  100         

      120       130       140       150       160       170        
pF1KE0 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR
       :::::.::::::.:::::::::::::::::::::::.:: :::::: .::::::::::::
CCDS76 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
     110       120       130       140       150       160         

      180       190       200       210       220       230        
pF1KE0 TNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFG
       :::::::::::::: :.::::: ...:::::::.::::::::..::::.:::::::::::
CCDS76 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG
     170       180       190       200       210       220         

      240       250       260       270       280       290        
pF1KE0 QIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQN
       :::::::::.::::::::..::::::::::::::::::::::::::::. :: .  :   
CCDS76 QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ---
     230       240       250       260       270       280         

      300       310       320       330       340        350       
pF1KE0 QIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQS-SAPWMGPN
       :. : : .:::.: ::: :: :::: :::::: ::.::: ::::::.  :: :: ::: .
CCDS76 QVDYSQ-WGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG-G
        290        300       310       320       330       340     

       360       370          380      
pF1KE0 YGVQPPQGQNGSML---PNQPSGYRVAGYETQ
       .:.::::::    .   ::: .:: .:.:.::
CCDS76 FGAQPPQGQAPPPVIPPPNQ-AGYGMASYQTQ
          350       360        370     

>>CCDS9311.1 PABPC3 gene_id:5042|Hs108|chr13              (631 aa)
 initn: 264 init1: 152 opt: 413  Z-score: 351.5  bits: 74.5 E(32554): 3e-13
Smith-Waterman score: 419; 25.9% identity (55.9% similar) in 401 aa overlap (9-386:101-482)

                                     10        20        30        
pF1KE0                       MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKM
                                     ..: ::......  . .  : .:   .:..
CCDS93 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV
               80        90       100       110       120       130

       40        50        60        70        80        90        
pF1KE0 IMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVS
       . :  :.  : ::.:. :. :  :.  :::  . :..: :.       : :. .   .  
CCDS93 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVG-------QFKSRKEREAEL
              140       150       160       170              180   

      100       110       120       130       140       150        
pF1KE0 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW
         :...  .:.. ... ..  : .:  :. ::   ...:. :  .:::::.:::::  . 
CCDS93 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE
           190       200       210       220        230       240  

      160       170       180       190       200       210        
pF1KE0 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYC
       ::..:...:.:. :.:.:: .. : .:    ..  . . .:.. :...  .     ..: 
CCDS93 DAQKAVDEMNGKELNGKQIYVGRAQKKVER-QTELKRTFEQMKQDRITRYQV---VNLYV
            250       260       270        280       290           

      220       230       240           250       260       270    
pF1KE0 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAIVSVNGTTI
        .. .:. .. .:..::::: :   .:. .    ::..:: :.: : :..:.. .::  .
CCDS93 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV
      300       310       320       330       340       350        

                     280       290       300       310       320   
pF1KE0 EGHVV-----------KCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYM
         . .           . :  .: .. .  :.   .   : : : .     ..:. . :.
CCDS93 ATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAP-PSGYFMTAVPQTQNHAAYY
      360       370       380       390        400       410       

           330       340           350           360       370     
pF1KE0 PNGWQVPAYGMYGQAWNQQGFN----QTQSSAPWMG----PNYGVQPPQGQNGSMLPNQP
       : . :. :    .  :. ::      :.. ::   :    :   ..: ..:    .:   
CCDS93 PPS-QI-ARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQ----VPRVM
       420         430       440       450       460           470 

         380                                                       
pF1KE0 SGYRVAGYETQ                                                 
       :  :::.  ::                                                 
CCDS93 STQRVANTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLA
             480       490       500       510       520       530 




386 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:46:17 2016 done: Wed Nov  2 18:46:17 2016
 Total Scan time:  1.810 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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