GENSCAN 1.0	Date run:  2-Nov-116	Time: 18:46:38

Sequence gi568815596r:70112722_70336175 : 223454 bp : 44.67% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  29936  30094  159  1  0   55   53   149 0.636   6.04
 1.02 PlyA +  31613  31618    6                               1.05

 2.00 Prom +  33058  33097   40                              -6.26
 2.01 Sngl +  35851  36138  288  0  0   97   48   153 0.678   6.90
 2.02 PlyA +  36710  36715    6                               1.05

 3.09 PlyA -  37192  37187    6                               1.05
 3.08 Term -  37843  37635  209  2  2   91   42   249 0.951  18.10
 3.07 Intr -  48066  47904  163  0  1   84  111   127 0.963  14.15
 3.06 Intr -  52471  52371  101  2  2   41   78    17 0.819  -4.17
 3.05 Intr -  52914  52807  108  1  0  109   92    27 0.943   5.46
 3.04 Intr -  56940  56836  105  1  0   60  115    56 0.940   5.69
 3.03 Intr -  63056  62952  105  0  0   70  110    27 0.892   3.29
 3.02 Intr -  66921  66811  111  1  0  102   99    13 0.916   4.15
 3.01 Init -  69264  68442  823  0  1   59   78   641 0.998  55.08
 3.00 Prom -  73017  72978   40                              -4.76

 4.00 Prom +  88306  88345   40                              -2.16
 4.01 Init +  89252  89482  231  1  0   60  110   198 0.515  15.78
 4.02 Intr +  89909  90049  141  1  0   54   76    56 0.308   1.55
 4.03 Intr +  90626  90802  177  1  0   16   32   158 0.745   3.12
 4.04 Term +  91490  91891  402  1  0   16   51   212 0.981   5.45
 4.05 PlyA +  92986  92991    6                               1.05

 5.07 PlyA -  94090  94085    6                               1.05
 5.06 Term - 106280 106260   21  2  0  114   36     2 0.017  -4.09
 5.05 Intr - 111908 111833   76  1  1   73   80    60 0.155   3.22
 5.04 Intr - 115101 115014   88  1  1   62   97    60 0.311   3.33
 5.03 Intr - 116597 116543   55  2  1   65   92     2 0.395  -3.15
 5.02 Intr - 118133 118035   99  2  0  115  121    55 0.871  11.81
 5.01 Init - 135666 135511  156  0  0   91   57    95 0.415   4.61
 5.00 Prom - 140350 140311   40                              -6.76

 6.00 Prom + 143641 143680   40                              -7.66
 6.01 Init + 145444 145555  112  0  1   95   74   243 0.998  21.97
 6.02 Intr + 146639 146845  207  0  0   94   71   189 0.981  16.85
 6.03 Intr + 148491 148665  175  1  1  126   76    89 0.988  10.50
 6.04 Intr + 162238 162449  212  1  2   85   94   323 0.999  31.16
 6.05 Intr + 162793 162945  153  2  0   69  115    73 0.771   8.14
 6.06 Term + 164013 164671  659  1  2   94   45   465 0.999  36.92
 6.07 PlyA + 164784 164789    6                               1.05

 7.05 PlyA - 166595 166590    6                               1.05
 7.04 Term - 168963 168913   51  0  0  106   36    61 0.584   0.13
 7.03 Intr - 175471 175347  125  2  2   83  103    61 0.770   7.40
 7.02 Intr - 176651 176629   23  1  2  122  103    28 0.129   4.89
 7.01 Init - 180928 180897   32  1  2   78  106     0 0.092   0.06
 7.00 Prom - 181848 181809   40                              -2.86

 8.04 PlyA - 183281 183276    6                               1.05
 8.03 Term - 184756 184568  189  1  0  117   42   222 0.999  17.95
 8.02 Intr - 188259 188119  141  0  0  131   94   181 0.996  23.55
 8.01 Init - 189290 189204   87  2  0  108   74   146 0.735  15.87
 8.00 Prom - 222782 222743   40                              -3.26


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 107745 107912  168  2  0   81   54   148 0.879   5.46
S.002 Term + 180511 180801  291  0  0   96   48   224 0.842  14.54


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_1|52_aa
RATYLAPPLRATQGTPVTSPPSGALIPALSRKDAKVVTCPVRQGGCAGGIGN

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_1|159_bp
cgcgccacgtacctggccccgcccctgcgagccacgcagggaaccccggtgacgtcacca
ccctccggcgctctcattcccgcgctctccagaaaagacgcgaaggtggtgacgtgtccc
gtgcgccagggcggctgcgcaggaggcattggcaactga

>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_2|95_aa
MPEPSTHSMGSCAARASLTSTTPCSTVPSPIDHPRAEECERMAQDWQAAPPAAPVWDPLG
EASWAPESGGECGVFISSSGIVNTPISTLCLAQGL

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_2|288_bp
atgcctgagccttccacccactccatgggctcctgtgcggcccgagcctccctgacgagc
accaccccctgctccacagtgcccagtcccatcgaccacccaagggctgaggaatgtgag
cgcatggcgcaggactggcaggcagctccacctgcagccccagtgtgggatccactgggt
gaagccagctgggctcctgagtctgggggggaatgtggagtctttatatctagctcaggg
attgtaaatacaccaatcagcaccctgtgtttagctcaaggtttgtga

>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_3|574_aa
MEPNSLRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPS
VEAVKIITGSDLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSC
LKAATQGVVENQCQHIKLAVNCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPL
VQRITKNILVVKCKASQKHSLGYLHTSFVQKVSGKSLPERRFFCSCQTLKSHKSNASKDE
TAQRCIHFFACICAFASDETLAQEFSDFLNFDSSGLKEIIVPQLGCHSESTVSACESTAS
KSKKRRKDEVSGAQMNSSLLPQDAVSSNLRKSGLKKPVVASSLKRQACGQLLDEAQVTLS
FQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFV
RKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVES
IAETYGRIEKQPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFE
YGHHRNGHVAEYQDQRPPLDQPLELAPLTTITFP

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_3|1725_bp
atggaaccaaattctctgaggactaaagtcccagctttcttatctgatttggggaaggcc
acattgaggggaatcagaaagtgtccccgatgtggcacatacaatggaacccggggactg
agctgtaagaacaagacatgtggaaccatattccgctacggtgcacgcaagcagcctagt
gttgaagctgtcaaaatcattacaggctctgatcttcaggtctactcagtgcggcaaaga
gaccggggccctgattaccgatgctttgtggagctcggggtttcagagacaacaatccag
acagtggatgggacgatcatcactcagctgagctctggacggtgttatgtcccctcatgc
ctgaaagctgccactcaaggcgttgtggaaaaccagtgccagcacatcaagctggcggtg
aactgccaggcagaggccacccctctgaccctgaagagctcggtcctgaatgcaatgcag
gcctccccggaaaccaaacagaccatctggcagttggccacggaacccacaggtcctctg
gtgcagagaattactaaaaacatcttggtggtgaaatgcaaggcaagccagaagcacagt
ttggggtatttgcatacatcttttgtgcagaaagtcagtggcaaaagcttgcctgagcgc
cgcttcttctgctcctgtcagactctgaaatcgcacaagtcaaatgcctccaaggatgag
acagcccagagatgcattcatttctttgcttgcatctgtgcctttgccagtgatgagaca
ctggctcaggaattctcagacttcctaaattttgattccagcggtcttaaagagattatt
gtaccccagttaggttgccattcagaatcaacagtatctgcttgtgagtctactgcctct
aagtcaaagaagaggagaaaggatgaagtatctggtgcacagatgaacagttcactactg
cctcaagatgcagtgagcagtaatctaaggaaaagtggcctgaaaaagcctgtggttgct
tcctcgttaaaaaggcaggcctgtggtcagctgttagatgaggcacaagtgactttatcc
ttccaagactggctggccagtgtcacagaacgcatccatcaaaccatgcactatcagttt
gatggcaaaccagaaccattggtgttccacattcctcagtcattttttgatgccctgcaa
caaagaatatctataggaagtgcaaaaaaacggctccccaactccaccacagcttttgtt
cggaaagatgccttgccactgggaaccttttccaagtatacttggcatatcactaatatc
ctgcaagttaaacaaatcttagataccccagagatgcccttggaaatcacccgtagcttt
atccagaaccgagatgggacttatgagctatttaaatgccctaaagtggaagtagaaagc
atagcagaaacctacggtcgtatagaaaaacaaccagtgctgcgacccttggaactaaaa
acttttctcaaagttggcaacacttccccagatcaaaaggagccaacacctttcatcatc
gagtggatcccagatatccttccccaatctaagattggcgagctgcggatcaagtttgag
tatggccaccaccggaatgggcatgtggcggagtaccaagaccagcggccccccttggac
cagcccttggaactggcccctctgaccactattactttcccttaa

>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_4|316_aa
MWPQHGLRYLVAAVLSRWALVETWAEVDRSPMSMEKALKHLEAYNTEKEGAFASRVGWAF
LTMLWKVHAQSLRDTAQVSRQLAQGKGDHILTEWLMAAMWTGWNDARELSKTVSKWQSYA
ELVEDTRDQRPHVELAIHWYPTNVQQVLVLVGTDADYSLVYGKRDKFLGKAAYTDGYRGQ
SVKMTVDYQELNKVTAPLHAAVLSITDLMDHLTMELGQYHYAVDLANASLSDDIAPESQE
QFGFTWEGRQWTFTVLPQGYVHSPTICHGLVATDLATWKFPKGIRLFHYIDDIMLTSDSP
ADLEAVVPLLQQHLAA

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_4|951_bp
atgtggccccaacatgggttgcggtacttggtggcagctgtgctgtccagatgggccctg
gtggaaacatgggcagaggtagacaggtcccccatgagcatggagaaggccctgaagcac
ctggaagcatacaacaccgagaaggagggtgcctttgccagcagagttggatgggcattt
ttgactatgctatggaaagtgcatgcccagtccctgcgggatacagcacaggtgagcagg
cagttggcacaagggaaaggtgaccatatcctgactgaatggctgatggcagccatgtgg
acagggtggaatgatgccagagaattatcaaaaactgtgagtaaatggcaatcatatgca
gagctggtggaggacaccagagatcagaggccacatgtggaattggcaatccactggtac
cccaccaatgtacagcaggtgttggtgctggtaggtactgatgcagattatagcctcgtc
tatgggaaacgggataagtttttaggcaaggctgcatacacagatggttatagaggccag
tcagtgaaaatgacagtggactatcaagaactaaataaagtaacagcccctttacatgca
gcagtcctgtctatcacggatttgatggaccacctgacgatggaattgggacagtaccat
tatgcagtggatttggctaatgcatccctttcagatgatatcgctccagagagccaggaa
cagtttggcttcacatgggaagggcgacaatggactttcacagtgttgccacagggctac
gtgcatagtcccaccatatgtcatggtctcgttgctacggatttagccacctggaaattt
ccaaaggggatccgcctattccattacattgatgatattatgttaacctctgattctcct
gcagatttagaagctgtggtgcccctcttgcaacaacatttggcagcatga

>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_5|164_aa
MREAGWWSSRREGLGPAPLPAYCSPWTPRYRGFCFLSMHLDAYNQDPICEDETAGNDPYC
FVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTE
DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWSFSAFQ

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_5|495_bp
atgagggaggcgggatggtggtcgtcccggagggaaggcctcggccctgcgccgctccca
gcctattgttctccgtggacaccgcgatatcgtggtttttgtttccttagcatgcacctg
gatgcttacaaccaagacccaatctgtgaggacgagacagctggaaatgatccctattgt
tttgtggagtttcatgagcatcgtcatgcagctgcagcattagctgctatgaatggacgg
aagataatgggtaaggaagtcaaagtgaattgggcaacaacccctagcagtcaaaagaaa
gatacaagcaatcatttccatgtctttgttggtgatctcagcccagaaattacaactgaa
gatataaaagctgcttttgcaccatttggaagaatatcagatgcccgagtggtaaaagac
atggcaacaggaaagtctaagggatatggctttgtctcctttttcaacaaatggtctttc
tccgcatttcaataa

>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_6|505_aa
MGRVVAELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKD
VKIDLFEREEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGI
YNGETLVFEESNWFIINVIKLVWRYGFQSLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVE
KLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQSTDINAFVGAVSL
SCSDSGLWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIG
TETRSDFYDIVLVATPLNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSR
PIDKFGLNTVLTTDNSDLFINSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILK
LFLSYDYAVKKPWLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALL
AYHRWNGHTDMIDQDGLYEKLKTEL

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_6|1518_bp
atggggcgcgtcgtcgcggagctcgtctcctcgctgctggggttgtggctgttgctgtgc
agctgcggatgccccgagggcgccgagctgcgtgctccgccagataaaatcgcgattatt
ggagccggaattggtggcacttcagcagcctattacctgcggcagaaatttgggaaagat
gtgaagatagacctgtttgaaagagaagaggtcgggggccgcctggctaccatgatggtg
caggggcaagaatacgaggcaggaggttctgtcatccatcctttaaatctgcacatgaaa
cgttttgtcaaagacctgggtctctctgctgttcaggcctctggtggcctactggggata
tataatggagagactctggtatttgaggagagcaactggttcataattaacgtgattaaa
ttagtttggcgctatggatttcaatccctccgtatgcacatgtgggtagaggacgtgtta
gacaagttcatgaggatctaccgctaccagtctcatgactatgccttcagtagtgtcgaa
aaattacttcatgctctaggaggagatgacttccttggaatgcttaatcgaacacttctt
gaaaccttgcaaaaggccggcttttctgagaagttcctcaatgaaatgattgctcctgtt
atgagggtcaattatggccaaagcacggacatcaatgcctttgtgggggcggtgtcactg
tcctgttctgattctggcctttgggcagtagaaggtggcaataaacttgtttgctcaggg
cttctgcaggcatccaaaagcaatcttatatctggctcagtaatgtacatcgaggagaaa
acaaagaccaagtacacaggaaatccaacaaagatgtatgaagtggtctaccaaattgga
actgagactcgttcagacttctatgacatcgtcttggtggccactccgttgaatcgaaaa
atgtcgaatattacttttctcaactttgatcctccaattgaggaattccatcaatattat
caacatatagtgacaactttagttaagggggaattgaatacatctatctttagctctaga
cccatagataaatttggccttaatacagttttaaccactgataattcagatttgttcatt
aacagtattgggattgtgccctctgtgagagaaaaggaagatcctgagccatcaacagat
ggaacatatgtttggaagatcttttcccaagaaactcttactaaagcacaaattttaaag
ctctttctgtcctatgattatgctgtgaagaagccatggcttgcatatcctcactataag
cccccggagaaatgcccctctatcattctccatgatcgactttattacctcaatggcata
gagtgtgcagcaagtgccatggagatgagtgccattgcagcccacaacgctgcactcctt
gcctatcaccgctggaacgggcacacagacatgattgatcaggatggcttatatgagaaa
cttaaaactgaactatga

>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_7|76_aa
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV
VIRGNSIIMLEALERV

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_7|231_bp
atgagcaaagctcaccctcccgagttgaaaaaatttatggacaagaagttatcattgaaa
ttaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaacctt
gtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtg
gtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataa

>gi568815596r:70112722_70336175|GENSCAN_predicted_peptide_8|138_aa
MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP
LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH
LIPTMTKKMKEALLSIGK

>gi568815596r:70112722_70336175|GENSCAN_predicted_CDS_8|417_bp
atggctgagctgcagcagctccgggtgcaggaggcggtggagtccatggtgaagagtctg
gaaagagagaacatccggaagatgcagggtctcatgttccggtgcagcgccagctgttgt
gaggacagccaggcctccatgaagcaggtgcaccagtgcatcgagcgctgccatgtgcct
ctggctcaagcccaggctttggtcaccagtgagctggagaagttccaggaccgcctggcc
cggtgcaccatgcattgcaacgacaaagccaaagattcaatagatgctgggagtaaggag
cttcaggtgaagcagcagctggacagttgtgtgaccaagtgtgtggatgaccacatgcac
ctcatcccaactatgaccaagaagatgaaggaggctctcttatcaattggaaaataa