Result of FASTA (omim) for pF1KE0653
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0653, 221 aa
  1>>>pF1KE0653 221 - 221 aa - 221 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6301+/-0.000299; mu= 20.1196+/- 0.019
 mean_var=129.0599+/-30.333, 0's: 0 Z-trim(119.9): 202  B-trim: 3789 in 2/50
 Lambda= 0.112896
 statistics sampled from 33978 (34445) to 33978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.404), width:  16
 Scan time:  5.470

The best scores are:                                      opt bits E(85289)
NP_003760 (OMIM: 601943) serine/arginine-rich spli ( 221) 1568 265.8 4.2e-71
NP_008855 (OMIM: 600812) serine/arginine-rich spli ( 248)  977 169.6 4.2e-42
NP_001071634 (OMIM: 600812) serine/arginine-rich s ( 201)  865 151.2 1.2e-36
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494)  414 78.4 2.4e-14
XP_011540253 (OMIM: 601940) PREDICTED: serine/argi ( 464)  409 77.5 4.1e-14
NP_001034554 (OMIM: 600914) serine/arginine-rich s ( 272)  335 65.1 1.3e-10
NP_008856 (OMIM: 600914) serine/arginine-rich spli ( 272)  335 65.1 1.3e-10
NP_001307143 (OMIM: 600914) serine/arginine-rich s ( 272)  335 65.1 1.3e-10
XP_016877082 (OMIM: 600914) PREDICTED: serine/argi ( 271)  333 64.7 1.7e-10
XP_005268057 (OMIM: 600914) PREDICTED: serine/argi ( 271)  333 64.7 1.7e-10
XP_005268056 (OMIM: 600914) PREDICTED: serine/argi ( 271)  333 64.7 1.7e-10
NP_006266 (OMIM: 601944) serine/arginine-rich spli ( 344)  246 50.7 3.4e-06
XP_005264541 (OMIM: 600572) PREDICTED: serine/argi ( 235)  239 49.3 6.2e-06
XP_005264542 (OMIM: 600572) PREDICTED: serine/argi ( 223)  238 49.1 6.8e-06
NP_001026854 (OMIM: 600572) serine/arginine-rich s ( 238)  230 47.9 1.7e-05
NP_001182375 (OMIM: 600572) serine/arginine-rich s ( 226)  225 47.0   3e-05
XP_011535379 (OMIM: 600914) PREDICTED: serine/argi ( 239)  223 46.7 3.8e-05
NP_003008 (OMIM: 603364) serine/arginine-rich spli ( 164)  206 43.7 0.00021
NP_002130 (OMIM: 300199,300238) RNA-binding motif  ( 391)  204 44.0 0.00042
NP_005745 (OMIM: 608431) ras GTPase-activating pro ( 466)  189 41.7  0.0025
XP_006714813 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  189 41.7  0.0025
XP_016864412 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  189 41.7  0.0025
NP_938405 (OMIM: 608431) ras GTPase-activating pro ( 466)  189 41.7  0.0025
XP_006714812 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  189 41.7  0.0025
XP_016864411 (OMIM: 608431) PREDICTED: ras GTPase- ( 466)  189 41.7  0.0025
XP_016872631 (OMIM: 603269) PREDICTED: serine/argi ( 282)  183 40.3  0.0038
NP_115285 (OMIM: 603269) serine/arginine-rich spli ( 282)  183 40.3  0.0038
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221)  178 39.4  0.0059
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221)  178 39.4  0.0059
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221)  178 39.4  0.0059
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168)  176 38.8  0.0064
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168)  176 38.8  0.0064
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172)  176 38.9  0.0065
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172)  176 38.9  0.0065
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202)  176 39.0  0.0071
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297)  176 39.2  0.0086


>>NP_003760 (OMIM: 601943) serine/arginine-rich splicing  (221 aa)
 initn: 1568 init1: 1568 opt: 1568  Z-score: 1397.6  bits: 265.8 E(85289): 4.2e-71
Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI
              130       140       150       160       170       180

              190       200       210       220 
pF1KE0 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
       :::::::::::::::::::::::::::::::::::::::::
NP_003 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
              190       200       210       220 

>>NP_008855 (OMIM: 600812) serine/arginine-rich splicing  (248 aa)
 initn: 1081 init1: 549 opt: 977  Z-score: 876.9  bits: 169.6 E(85289): 4.2e-42
Smith-Waterman score: 1004; 66.8% identity (78.8% similar) in 241 aa overlap (1-217:1-239)

                 10        20        30        40        50        
pF1KE0 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
       ::: .  ::  :..: :::::::: :.: ::.::.::::: ::.:.::::.:  :::::.
NP_008 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
               10        20        30        40        50        60

       60        70        80        90                100         
pF1KE0 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
       ::::::::::.:::.::::   ::::::::.          :: :: ::: : :::.:::
NP_008 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
               70        80        90       100       110          

     110       120       130       140       150       160         
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
       . ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
NP_008 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
     120       130       140       150       160       170         

     170       180         190       200                  210      
pF1KE0 FRSHEGETSYIRVYPE--RSTSYGYSRSRSGSRGRD-----------SPYQSRGSPHYFS
       ::::::::.::::  .  :: ::: ::::: ::.:.           :: .:::::.: :
NP_008 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-S
     180       190       200       210       220       230         

        220      
pF1KE0 PFRPY     
       :         
NP_008 PRHSRSRSRT
      240        

>>NP_001071634 (OMIM: 600812) serine/arginine-rich splic  (201 aa)
 initn: 507 init1: 462 opt: 865  Z-score: 779.2  bits: 151.2 E(85289): 1.2e-36
Smith-Waterman score: 875; 68.9% identity (82.4% similar) in 193 aa overlap (1-182:1-190)

                 10        20        30        40        50        
pF1KE0 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
       ::: .  ::  :..: :::::::: :.: ::.::.::::: ::.:.::::.:  :::::.
NP_001 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
               10        20        30        40        50        60

       60        70        80        90                100         
pF1KE0 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
       ::::::::::.:::.::::   ::::::::.          :: :: ::: : :::.:::
NP_001 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
               70        80        90       100       110          

     110       120       130       140       150       160         
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
       . ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
NP_001 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
     120       130       140       150       160       170         

     170       180       190       200       210       220 
pF1KE0 FRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
       :::::  ..: :.                                       
NP_001 FRSHE--VGYTRILFFDQNWIQWS                            
     180         190       200                             

>>NP_005617 (OMIM: 601940) serine/arginine-rich splicing  (494 aa)
 initn: 283 init1: 125 opt: 414  Z-score: 378.5  bits: 78.4 E(85289): 2.4e-14
Smith-Waterman score: 476; 42.9% identity (66.2% similar) in 210 aa overlap (15-211:3-204)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :.:.: :  ..::.:.: .:  ::.: :..::: .:     ::.:.
NP_005             MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVEFD
                           10        20        30             40   

               70        80              90          100           
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEF---PR---TYG-GRGGWP--RGGRN--GPPTRRS
       : :::.::.:  :: :    :. ::    ::   .:: ::.:.   :.::.  ::::: .
NP_005 DLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR-T
            50        60        70        80        90       100   

     110       120       130       140         150       160       
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GVGMVEYLRKEDMEYALRKLDD
       ..:..: .:    :::::::.::.::.: :::..:   . :..:..   ::. ::.::: 
NP_005 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDG
            110       120       130       140       150       160  

       170       180       190       200       210       220       
pF1KE0 TKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY      
       :.  ...     ..  :      .:::::: ::.:.   .:: :                
NP_005 TEVNGRK--IRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS
              170       180       190       200       210       220

NP_005 RSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNN
              230       240       250       260       270       280

>>XP_011540253 (OMIM: 601940) PREDICTED: serine/arginine  (464 aa)
 initn: 443 init1: 119 opt: 409  Z-score: 374.4  bits: 77.5 E(85289): 4.1e-14
Smith-Waterman score: 471; 43.8% identity (67.1% similar) in 210 aa overlap (15-209:3-205)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :.:.: :  ..::.:.: .:  ::.: :..::: .:     ::.:.
XP_011             MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVEFD
                           10        20        30             40   

               70        80              90          100           
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEF---PR---TYG-GRGGWP--RGGRN--GPPTRRS
       : :::.::.:  :: :    :. ::    ::   .:: ::.:.   :.::.  ::::: .
XP_011 DLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR-T
            50        60        70        80        90       100   

     110       120       130       140         150       160       
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GVGMVEYLRKEDMEYALRKLDD
       ..:..: .:    :::::::.::.::.: :::..:   . :..:..   ::. ::.::: 
XP_011 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDG
            110       120       130       140       150       160  

       170       180       190         200       210       220     
pF1KE0 TKFRSHEGETSYIRVYPERSTSYGYSRS--RSGSRGRDSPYQSRGSPHYFSPFRPY    
       :.  ... .    .   .:  ::. :::  :::::.: :  .::                
XP_011 TEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSGSRSR-SKSRSRSQSRSRSKKEKSRSPS
            170       180       190        200       210       220 

XP_011 KEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEE
             230       240       250       260       270       280 

>>NP_001034554 (OMIM: 600914) serine/arginine-rich splic  (272 aa)
 initn: 446 init1: 155 opt: 335  Z-score: 311.4  bits: 65.1 E(85289): 1.3e-10
Smith-Waterman score: 427; 39.6% identity (61.8% similar) in 217 aa overlap (15-209:5-216)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :...: :   .::::.: .:  :::::.:.::  .:   :.::.::
NP_001           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFE
                         10        20        30             40     

               70        80          90                 100        
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPR--TYGGRG-GW---------PRGGRNGPPTRR
       :::::.::.:  .: .  . :. .:  :  . :::: :          ::. : . :  :
NP_001 DPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVR
          50        60        70        80        90       100     

      110       120       130       140         150       160      
pF1KE0 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-
       .. :..: .:    ::::::: ::.::.: .::...  .  :.::.    :.. :..:: 
NP_001 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLS
         110       120       130       140       150       160     

             170       180          190       200       210        
pF1KE0 ----DDTKFRSHEGETSYIRVYPE---RSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPF
           .  :..  ::   . :   .   :. : . ::::: ::.: :  .::         
NP_001 GKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRS
         170       180       190       200       210       220     

      220                                             
pF1KE0 RPY                                            
                                                      
NP_001 KSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
         230       240       250       260       270  

>>NP_008856 (OMIM: 600914) serine/arginine-rich splicing  (272 aa)
 initn: 446 init1: 155 opt: 335  Z-score: 311.4  bits: 65.1 E(85289): 1.3e-10
Smith-Waterman score: 427; 39.6% identity (61.8% similar) in 217 aa overlap (15-209:5-216)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :...: :   .::::.: .:  :::::.:.::  .:   :.::.::
NP_008           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFE
                         10        20        30             40     

               70        80          90                 100        
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPR--TYGGRG-GW---------PRGGRNGPPTRR
       :::::.::.:  .: .  . :. .:  :  . :::: :          ::. : . :  :
NP_008 DPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVR
          50        60        70        80        90       100     

      110       120       130       140         150       160      
pF1KE0 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-
       .. :..: .:    ::::::: ::.::.: .::...  .  :.::.    :.. :..:: 
NP_008 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLS
         110       120       130       140       150       160     

             170       180          190       200       210        
pF1KE0 ----DDTKFRSHEGETSYIRVYPE---RSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPF
           .  :..  ::   . :   .   :. : . ::::: ::.: :  .::         
NP_008 GKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRS
         170       180       190       200       210       220     

      220                                             
pF1KE0 RPY                                            
                                                      
NP_008 KSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
         230       240       250       260       270  

>>NP_001307143 (OMIM: 600914) serine/arginine-rich splic  (272 aa)
 initn: 446 init1: 155 opt: 335  Z-score: 311.4  bits: 65.1 E(85289): 1.3e-10
Smith-Waterman score: 427; 39.6% identity (61.8% similar) in 217 aa overlap (15-209:5-216)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :...: :   .::::.: .:  :::::.:.::  .:   :.::.::
NP_001           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFE
                         10        20        30             40     

               70        80          90                 100        
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPR--TYGGRG-GW---------PRGGRNGPPTRR
       :::::.::.:  .: .  . :. .:  :  . :::: :          ::. : . :  :
NP_001 DPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVR
          50        60        70        80        90       100     

      110       120       130       140         150       160      
pF1KE0 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-
       .. :..: .:    ::::::: ::.::.: .::...  .  :.::.    :.. :..:: 
NP_001 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLS
         110       120       130       140       150       160     

             170       180          190       200       210        
pF1KE0 ----DDTKFRSHEGETSYIRVYPE---RSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPF
           .  :..  ::   . :   .   :. : . ::::: ::.: :  .::         
NP_001 GKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRS
         170       180       190       200       210       220     

      220                                             
pF1KE0 RPY                                            
                                                      
NP_001 KSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
         230       240       250       260       270  

>>XP_016877082 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 392 init1: 155 opt: 333  Z-score: 309.6  bits: 64.7 E(85289): 1.7e-10
Smith-Waterman score: 424; 39.3% identity (61.2% similar) in 214 aa overlap (15-209:5-213)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :...: :   .::::.: .:  :::::.:.::  .:   :.::.::
XP_016           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFE
                         10        20        30             40     

               70        80          90                 100        
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPR--TYGGRG-GW---------PRGGRNGPPTRR
       :::::.::.:  .: .  . :. .:  :  . :::: :          ::. : . :  :
XP_016 DPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVR
          50        60        70        80        90       100     

      110       120       130       140         150       160      
pF1KE0 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-
       .. :..: .:    ::::::: ::.::.: .::...  .  :.::.    :.. :..:: 
XP_016 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLS
         110       120       130       140       150       160     

             170       180       190       200       210       220 
pF1KE0 ----DDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
           .  :..  ::   .      :: . . ::::: ::.:.    ::            
XP_016 GKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSK
         170       180       190       200       210       220     

XP_016 SRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
         230       240       250       260       270 

>>XP_005268057 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 392 init1: 155 opt: 333  Z-score: 309.6  bits: 64.7 E(85289): 1.7e-10
Smith-Waterman score: 424; 39.3% identity (61.2% similar) in 214 aa overlap (15-209:5-213)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :...: :   .::::.: .:  :::::.:.::  .:   :.::.::
XP_005           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFE
                         10        20        30             40     

               70        80          90                 100        
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPR--TYGGRG-GW---------PRGGRNGPPTRR
       :::::.::.:  .: .  . :. .:  :  . :::: :          ::. : . :  :
XP_005 DPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVR
          50        60        70        80        90       100     

      110       120       130       140         150       160      
pF1KE0 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-
       .. :..: .:    ::::::: ::.::.: .::...  .  :.::.    :.. :..:: 
XP_005 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLS
         110       120       130       140       150       160     

             170       180       190       200       210       220 
pF1KE0 ----DDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
           .  :..  ::   .      :: . . ::::: ::.:.    ::            
XP_005 GKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSK
         170       180       190       200       210       220     

XP_005 SRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
         230       240       250       260       270 




221 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:50:59 2016 done: Wed Nov  2 18:51:00 2016
 Total Scan time:  5.470 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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