Result of FASTA (ccds) for pF1KE0653
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0653, 221 aa
  1>>>pF1KE0653 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5286+/-0.000686; mu= 14.3417+/- 0.041
 mean_var=104.5912+/-22.124, 0's: 0 Z-trim(112.6): 116  B-trim: 0 in 0/50
 Lambda= 0.125408
 statistics sampled from 13199 (13340) to 13199 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.41), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS9199.1 SRSF9 gene_id:8683|Hs108|chr12          ( 221) 1568 293.4 7.6e-80
CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17         ( 248)  977 186.5 1.3e-47
CCDS58580.1 SRSF1 gene_id:6426|Hs108|chr17         ( 201)  865 166.2 1.4e-41
CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1            ( 494)  414 85.0 9.4e-17
CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14         ( 272)  335 70.4 1.3e-12


>>CCDS9199.1 SRSF9 gene_id:8683|Hs108|chr12               (221 aa)
 initn: 1568 init1: 1568 opt: 1568  Z-score: 1546.9  bits: 293.4 E(32554): 7.6e-80
Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI
              130       140       150       160       170       180

              190       200       210       220 
pF1KE0 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
       :::::::::::::::::::::::::::::::::::::::::
CCDS91 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
              190       200       210       220 

>>CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17              (248 aa)
 initn: 1081 init1: 549 opt: 977  Z-score: 968.4  bits: 186.5 E(32554): 1.3e-47
Smith-Waterman score: 1004; 66.8% identity (78.8% similar) in 241 aa overlap (1-217:1-239)

                 10        20        30        40        50        
pF1KE0 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
       ::: .  ::  :..: :::::::: :.: ::.::.::::: ::.:.::::.:  :::::.
CCDS11 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
               10        20        30        40        50        60

       60        70        80        90                100         
pF1KE0 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
       ::::::::::.:::.::::   ::::::::.          :: :: ::: : :::.:::
CCDS11 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
               70        80        90       100       110          

     110       120       130       140       150       160         
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
       . ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
CCDS11 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
     120       130       140       150       160       170         

     170       180         190       200                  210      
pF1KE0 FRSHEGETSYIRVYPE--RSTSYGYSRSRSGSRGRD-----------SPYQSRGSPHYFS
       ::::::::.::::  .  :: ::: ::::: ::.:.           :: .:::::.: :
CCDS11 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-S
     180       190       200       210       220       230         

        220      
pF1KE0 PFRPY     
       :         
CCDS11 PRHSRSRSRT
      240        

>>CCDS58580.1 SRSF1 gene_id:6426|Hs108|chr17              (201 aa)
 initn: 507 init1: 462 opt: 865  Z-score: 860.1  bits: 166.2 E(32554): 1.4e-41
Smith-Waterman score: 875; 68.9% identity (82.4% similar) in 193 aa overlap (1-182:1-190)

                 10        20        30        40        50        
pF1KE0 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
       ::: .  ::  :..: :::::::: :.: ::.::.::::: ::.:.::::.:  :::::.
CCDS58 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
               10        20        30        40        50        60

       60        70        80        90                100         
pF1KE0 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
       ::::::::::.:::.::::   ::::::::.          :: :: ::: : :::.:::
CCDS58 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
               70        80        90       100       110          

     110       120       130       140       150       160         
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
       . ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
CCDS58 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
     120       130       140       150       160       170         

     170       180       190       200       210       220 
pF1KE0 FRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
       :::::  ..: :.                                       
CCDS58 FRSHE--VGYTRILFFDQNWIQWS                            
     180         190       200                             

>>CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1                 (494 aa)
 initn: 283 init1: 125 opt: 414  Z-score: 414.2  bits: 85.0 E(32554): 9.4e-17
Smith-Waterman score: 476; 42.9% identity (66.2% similar) in 210 aa overlap (15-211:3-204)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :.:.: :  ..::.:.: .:  ::.: :..::: .:     ::.:.
CCDS33             MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVEFD
                           10        20        30             40   

               70        80              90          100           
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEF---PR---TYG-GRGGWP--RGGRN--GPPTRRS
       : :::.::.:  :: :    :. ::    ::   .:: ::.:.   :.::.  ::::: .
CCDS33 DLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR-T
            50        60        70        80        90       100   

     110       120       130       140         150       160       
pF1KE0 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GVGMVEYLRKEDMEYALRKLDD
       ..:..: .:    :::::::.::.::.: :::..:   . :..:..   ::. ::.::: 
CCDS33 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDG
            110       120       130       140       150       160  

       170       180       190       200       210       220       
pF1KE0 TKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY      
       :.  ...     ..  :      .:::::: ::.:.   .:: :                
CCDS33 TEVNGRK--IRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS
              170       180       190       200       210       220

CCDS33 RSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNN
              230       240       250       260       270       280

>>CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14              (272 aa)
 initn: 446 init1: 155 opt: 335  Z-score: 340.2  bits: 70.4 E(32554): 1.3e-12
Smith-Waterman score: 427; 39.6% identity (61.8% similar) in 217 aa overlap (15-209:5-216)

               10        20        30        40        50        60
pF1KE0 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
                     :...: :   .::::.: .:  :::::.:.::  .:   :.::.::
CCDS32           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFE
                         10        20        30             40     

               70        80          90                 100        
pF1KE0 DPRDAEDAIYGRNGYDYGQCRLRVEFPR--TYGGRG-GW---------PRGGRNGPPTRR
       :::::.::.:  .: .  . :. .:  :  . :::: :          ::. : . :  :
CCDS32 DPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVR
          50        60        70        80        90       100     

      110       120       130       140         150       160      
pF1KE0 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-
       .. :..: .:    ::::::: ::.::.: .::...  .  :.::.    :.. :..:: 
CCDS32 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLS
         110       120       130       140       150       160     

             170       180          190       200       210        
pF1KE0 ----DDTKFRSHEGETSYIRVYPE---RSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPF
           .  :..  ::   . :   .   :. : . ::::: ::.: :  .::         
CCDS32 GKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRS
         170       180       190       200       210       220     

      220                                             
pF1KE0 RPY                                            
                                                      
CCDS32 KSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
         230       240       250       260       270  




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:50:58 2016 done: Wed Nov  2 18:50:59 2016
 Total Scan time:  1.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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