Result of FASTA (ccds) for pF1KE0587
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0587, 278 aa
  1>>>pF1KE0587 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7633+/-0.00171; mu= 9.2052+/- 0.105
 mean_var=375.8756+/-72.207, 0's: 0 Z-trim(110.1): 168  B-trim: 27 in 1/49
 Lambda= 0.066153
 statistics sampled from 11194 (11350) to 11194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.349), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS31330.1 1 gene_id:387264|Hs108|chr11           ( 278) 2415 244.0 8.7e-65
CCDS41592.1 5 gene_id:439915|Hs108|chr11           ( 237) 1128 121.1 7.6e-28
CCDS41684.1 10 gene_id:387273|Hs108|chr11          ( 202) 1117 119.9 1.4e-27
CCDS41591.1 3 gene_id:387266|Hs108|chr11           ( 238) 1021 110.9   9e-25
CCDS41682.1 7 gene_id:440050|Hs108|chr11           ( 165)  910 100.0 1.2e-21
CCDS31331.1 2 gene_id:440021|Hs108|chr11           ( 177)  850 94.3 6.3e-20
CCDS41685.1 11 gene_id:440051|Hs108|chr11          ( 156)  809 90.3   9e-19
CCDS41683.1 8 gene_id:57830|Hs108|chr11            ( 187)  779 87.6 7.2e-18
CCDS53677.1 9 gene_id:3846|Hs108|chr11             ( 169)  751 84.9 4.3e-17
CCDS31332.1 6 gene_id:440023|Hs108|chr11           ( 129)  653 75.3 2.5e-14
CCDS56029.1 1 gene_id:728318|Hs108|chr17           ( 250)  582 69.0 3.8e-12
CCDS42957.1 4 gene_id:386672|Hs108|chr21           ( 401)  566 67.8 1.4e-11


>>CCDS31330.1 1 gene_id:387264|Hs108|chr11                (278 aa)
 initn: 2415 init1: 2415 opt: 2415  Z-score: 1276.6  bits: 244.0 E(32554): 8.7e-65
Smith-Waterman score: 2415; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
              190       200       210       220       230       240

              250       260       270        
pF1KE0 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
       ::::::::::::::::::::::::::::::::::::::
CCDS31 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
              250       260       270        

>>CCDS41592.1 5 gene_id:439915|Hs108|chr11                (237 aa)
 initn: 1729 init1: 715 opt: 1128  Z-score: 613.4  bits: 121.1 E(32554): 7.6e-28
Smith-Waterman score: 1311; 60.7% identity (64.8% similar) in 298 aa overlap (1-278:1-237)

               10               20        30                     40
pF1KE0 MGCCGCSGGCGSSCGG-------CGSGCGGCGSGCGGCGSGCGGSG-------------S
       ::::::::::::.:::       ::::::::::::::::::::: :             :
CCDS41 MGCCGCSGGCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGS
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KE0 SCCVPVCCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCG
       .::::::::::.:: ::.::::::::::::: :::: :: :::  ::.::::::::::::
CCDS41 GCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCG
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KE0 SCGGSKGGCGSCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSC
       ::::::::::::::::::::: :::                           .:::::: 
CCDS41 SCGGSKGGCGSCGGSKGGCGS-CGG---------------------------SKGGCGSY
              130       140                                   150  

              170       180       190       200       210       220
pF1KE0 GCSKGACGSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSC
       :::...:         :  :  :   :.:      ::::.:  : :.:  : ::   :::
CCDS41 GCSQSSC---------CKPC--C---CSS------GCGSSC--CQSSCCKPYCCQ--SSC
                     160                  170         180          

              230       240       250       260       270        
pF1KE0 GSCAGSKGGCGSSCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
                :   : : :::::: : :::::::::::: :::: ::::::::::::::
CCDS41 ---------CKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKPCCCQSSCCVPVCCQCKI
               190       200       210       220       230       

>>CCDS41684.1 10 gene_id:387273|Hs108|chr11               (202 aa)
 initn: 607 init1: 607 opt: 1117  Z-score: 608.4  bits: 119.9 E(32554): 1.4e-27
Smith-Waterman score: 1323; 64.2% identity (66.3% similar) in 279 aa overlap (1-278:1-202)

               10        20        30        40        50        60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
       ::::::::::::.::::::::::::::::: :::::: :::::::::::::::: ::.::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCGSSCCVPVCCCKPVCCCVPACS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
       ::::     :: ::::: :::::: :::::::::::::::::::::::::::::::::::
CCDS41 CSSC-----GSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
                    70        80        90       100       110     

              130       140       150       160       170       180
pF1KE0 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
       :                                                :::::::::::
CCDS41 S------------------------------------------------CGGSKGGCGSC
                                                         120       

              190       200       210       220       230       240
pF1KE0 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
       :: ::::::::         :. :  .:  : :::: :.::::      :     : :::
CCDS41 GGSKGGCGSCG---------CSQC--NCCKP-CCCS-SGCGSC------C-----QSSCC
       130                140          150                   160   

               250       260       270        
pF1KE0 KPCCC-SSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
       .:::: :: :   ::::::::::: ::::::::::::::
CCDS41 NPCCCQSSCCVPVCCQSSCCKPCCCQSSCCVPVCCQCKI
           170       180       190       200  

>>CCDS41591.1 3 gene_id:387266|Hs108|chr11                (238 aa)
 initn: 1420 init1: 579 opt: 1021  Z-score: 558.2  bits: 110.9 E(32554): 9e-25
Smith-Waterman score: 1281; 61.0% identity (67.9% similar) in 287 aa overlap (1-278:1-238)

               10        20        30        40        50        60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
       ::: :::::::::::::::.::::::: :::::::       :::::::::::: ::.::
CCDS41 MGCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSGC-------CVPVCCCKPVCCCVPACS
               10        20        30               40        50   

               70        80        90       100             110    
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGS------CGGSKGGCGSCGG
       ::::     :: ::::: :::::::::::::::::::::::      : .:.  ::::::
CCDS41 CSSC-----GSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSS--CGSCGG
                 60        70        80        90       100        

          120          130       140       150       160       170 
pF1KE0 SKGGCG--SGC-GGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCG
       ::: ::  .:  :::::  :    : :: :::  .:. ::: ...: . .::...:    
CCDS41 SKGVCGFRGGSKGGCGSCGCSQCSCYKP-CCCSSGCG-SSCCQSSCCKPSCSQSSC----
        110       120       130        140        150       160    

             180       190       200       210       220       230 
pF1KE0 GSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCG
            :  :  :. .  ::      :   :  :.::::    ::. : :  :        
CCDS41 -----CKPC--CSQS--SC------CKPCC--CSSGCGS--SCCQSSCCKPC--------
                       170               180         190           

             240       250       260       270        
pF1KE0 SSCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
         ::: ::::::::::::::::::::::::: ::::::::.::::::
CCDS41 --CSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
             200       210       220       230        

>>CCDS41682.1 7 gene_id:440050|Hs108|chr11                (165 aa)
 initn: 1373 init1: 600 opt: 910  Z-score: 502.4  bits: 100.0 E(32554): 1.2e-21
Smith-Waterman score: 1080; 70.9% identity (77.2% similar) in 189 aa overlap (90-278:2-165)

      60        70        80        90       100       110         
pF1KE0 SCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGC
                                     : :: :.: :::      :::.::.. :::
CCDS41                              MGCCGCSEG-CGS------GCGGCGSGCGGC
                                             10              20    

     120       130       140       150       160       170         
pF1KE0 GSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS
       ::::::::::::::::::::.:::::::::::::     ::: :::.:::::::::::::
CCDS41 GSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCG-----SCGGSKGGCGSCGGSKGGCGS
           30        40        50             60        70         

     180       190       200       210       220       230         
pF1KE0 CGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC
       ::: :::::::: :. .: . :  :.::::    ::. : :  :          : : ::
CCDS41 CGGSKGGCGSCGCSQCSCYKPCC-CSSGCGSS--CCQSSCCKPC----------CCQSSC
      80        90       100        110         120                

     240       250       260       270        
pF1KE0 CKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
       ::::::::::::::::::::.::::::::::::::::::
CCDS41 CKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
        130       140       150       160     

>>CCDS31331.1 2 gene_id:440021|Hs108|chr11                (177 aa)
 initn: 1174 init1: 457 opt: 850  Z-score: 471.2  bits: 94.3 E(32554): 6.3e-20
Smith-Waterman score: 1038; 65.2% identity (72.1% similar) in 204 aa overlap (77-278:2-177)

         50        60        70        80        90       100      
pF1KE0 CCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGS-CGGS
                                     : ::   :: .:::.::.: ::::: ::: 
CCDS31                              MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGC
                                            10        20        30 

         110       120       130       140       150       160     
pF1KE0 KGGCGSCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKG
        .: :.::.. :::.:.:::::: : ::::::::.:  ::::::.:::            
CCDS31 GSGRGGCGSGCGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSCG------------
              40        50        60        70                     

         170       180       190       200       210       220     
pF1KE0 ACGSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAG
          :::::::::::::: :::::::::::::::: ::   :.:  : ::::         
CCDS31 ---SCGGSKGGCGSCGGSKGGCGSCGGSKGGCGS-CGCSQSSCCKP-CCCS---------
         80        90       100       110        120               

         230       240        250       260       270        
pF1KE0 SKGGCGSSCSQCSCCKPCCC-SSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
         .:::::: : :::::::: :: :   ::::::::::: ::.:::::::::::
CCDS31 --SGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPCCCQSNCCVPVCCQCKI
           130       140       150       160       170       

>>CCDS41685.1 11 gene_id:440051|Hs108|chr11               (156 aa)
 initn: 1098 init1: 470 opt: 809  Z-score: 450.5  bits: 90.3 E(32554): 9e-19
Smith-Waterman score: 939; 64.0% identity (73.5% similar) in 189 aa overlap (90-278:2-156)

      60        70        80        90       100       110         
pF1KE0 SCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGC
                                     : :: : :::::      :::.::...:::
CCDS41                              MGCCGCS-GGCGS------GCGGCGSGSGGC
                                             10              20    

     120       130       140       150       160       170         
pF1KE0 GSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS
       ::::::::::::::.:::::.:::::::::::::     ::: :::.:::::.:::::::
CCDS41 GSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCG-----SCGGSKGGCGSCGSSKGGCGS
           30        40        50             60        70         

     180       190       200       210       220       230         
pF1KE0 CGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC
       ::  ...: .   :..:::: :  : :.:. : :::.               ::: : ::
CCDS41 CGCSQSNCCKPCCSSSGCGSFC--CQSSCSKP-CCCQ---------------SSCCQSSC
      80        90       100          110                      120 

     240       250       260       270        
pF1KE0 CKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
       ::::::.:    ::::::: :::: ::::::::::::::
CCDS41 CKPCCCQS----SCCQSSCFKPCCCQSSCCVPVCCQCKI
                 130       140       150      

>>CCDS41683.1 8 gene_id:57830|Hs108|chr11                 (187 aa)
 initn: 892 init1: 531 opt: 779  Z-score: 434.3  bits: 87.6 E(32554): 7.2e-18
Smith-Waterman score: 1087; 55.8% identity (60.4% similar) in 278 aa overlap (1-278:1-187)

               10        20        30        40        50        60
pF1KE0 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCS
       ::::::::::::.:::::::::::::              :::::.:::::::: ::.::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGS--------------SCCVPICCCKPVCCCVPACS
               10        20                      30        40      

               70        80        90       100       110       120
pF1KE0 CSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCG
       ::::     :: :::::: ::::: :: :::::::::::::::     :..:.  :  : 
CCDS41 CSSC-----GSCGGSKGGRGSCGGSKGDCGSCGGSKGGCGSCG-----CSQCSCYKPCCC
         50             60        70        80             90      

              130       140       150       160       170       180
pF1KE0 SGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSC
       :.  :::::::    ::::  :    :: :::    :  :.::.:               
CCDS41 SS--GCGSSCC-QSSCCKP--C----CSQSSC----CKPCSCSSG---------------
          100        110                 120                       

              190       200       210       220       230       240
pF1KE0 GGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCC
                       :::.:  : :.:        :. :             ::: :::
CCDS41 ----------------CGSSC--CQSSC--------CKPC-------------CSQSSCC
                      130                 140                      

              250       260       270        
pF1KE0 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
       :::::::::::::::::::::::::::::::.::::::
CCDS41 KPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPICCQCKI
     150       160       170       180       

>>CCDS53677.1 9 gene_id:3846|Hs108|chr11                  (169 aa)
 initn: 1909 init1: 629 opt: 751  Z-score: 420.3  bits: 84.9 E(32554): 4.3e-17
Smith-Waterman score: 961; 65.1% identity (74.1% similar) in 189 aa overlap (90-278:2-169)

      60        70        80        90       100       110         
pF1KE0 SCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGC
                                     : :: : :::::      .::.: .: :.:
CCDS53                              MGCCGCS-GGCGS------SCGGCDSSCGSC
                                             10              20    

     120       130       140       150       160       170         
pF1KE0 GSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGS
       :::: ::: :::.:: ::::.:::::::::::::: :::::: :::.:::::     :..
CCDS53 GSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCGKRGCGSCGGSKGGCGSCG-----CSQ
           30        40        50        60        70              

     180       190       200       210       220       230         
pF1KE0 CGGCKGGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSC
       :. ::  :  :.   .::::.:  :  .:  : :  .:: :  : .:.:  :::: : ::
CCDS53 CSCCKPCC--CS---SGCGSSC--CQCSCCKPYCS-QCSCCKPCCSSSGR-GSSCCQSSC
      80             90         100        110       120        130

     240       250       260       270        
pF1KE0 CKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
       ::::: ::::::::::::::::::::: :::::: ::::
CCDS53 CKPCCSSSGCGSSCCQSSCCKPCCSQSRCCVPVCYQCKI
              140       150       160         

>>CCDS31332.1 6 gene_id:440023|Hs108|chr11                (129 aa)
 initn: 1095 init1: 418 opt: 653  Z-score: 370.8  bits: 75.3 E(32554): 2.5e-14
Smith-Waterman score: 892; 64.4% identity (67.2% similar) in 180 aa overlap (100-278:2-129)

      70        80        90       100       110        120        
pF1KE0 GSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGGCGS-CGGSKGGCGSGCGGCGS
                                     : :: : ::::: :::    ::::::::::
CCDS31                              MGCCGCS-GGCGSGCGG----CGSGCGGCGS
                                             10            20      

      130       140       150       160       170       180        
pF1KE0 SCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGCGSCGGCKGGCG
       :::::.:::::.:::::::::.:::     ::: ::: :::::::::::::::: :::::
CCDS31 SCCVPICCCKPVCCCVPACSCTSCG-----SCGGSKGCCGSCGGSKGGCGSCGGSKGGCG
         30        40        50             60        70        80 

      190       200       210       220       230       240        
pF1KE0 SCGGSKGGCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCCKPCCCSSG
       :::                                          :::::::::: ::::
CCDS31 SCG------------------------------------------CSQCSCCKPCYCSSG
                                                        90         

      250       260       270        
pF1KE0 CGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
       :::::::::::::::::.:::::.::::::
CCDS31 CGSSCCQSSCCKPCCSQASCCVPICCQCKI
     100       110       120         




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:04:32 2016 done: Wed Nov  2 21:04:32 2016
 Total Scan time:  1.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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