GENSCAN 1.0	Date run:  2-Nov-116	Time: 21:37:16

Sequence gi568815588r:5918052_6162151 : 244100 bp : 45.78% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    291    427  137  1  2   97  111   134 0.879  16.89
 1.02 Intr +   3207   3306  100  2  1  129   61    67 0.997   7.78
 1.03 Intr +   3397   3518  122  2  2   51   78   100 0.907   5.51
 1.04 Intr +   5624   5789  166  1  1   43    3   133 0.726  -0.17
 1.05 Intr +   6260   6457  198  0  0   80  110   212 0.997  21.92
 1.06 Intr +   7316   7441  126  0  0   79   91    91 0.814   9.15
 1.07 Intr +   9384   9490  107  1  2   69   86    66 0.964   4.43
 1.08 Intr +  18405  18536  132  2  0  124   54   228 0.998  23.84
 1.09 Term +  19059  19229  171  2  0  104   55   280 0.997  24.13
 1.10 PlyA +  20044  20049    6                               1.05

 2.07 PlyA -  25196  25191    6                               1.05
 2.06 Term -  35155  35044  112  0  1   94   47    93 0.913   3.83
 2.05 Intr -  38403  38328   76  1  1   91  113    39 0.778   5.27
 2.04 Intr -  41735  41703   33  0  0  131  119    38 0.981   9.39
 2.03 Intr -  42516  42316  201  1  0   79   71    98 0.724   6.46
 2.02 Intr -  48288  48094  195  1  0   97   64   134 0.917  11.29
 2.01 Init -  59441  59354   88  2  1  122   37   261 0.560  23.20
 2.00 Prom -  65818  65779   40                               0.54

 3.00 Prom +  70793  70832   40                              -6.26
 3.01 Init +  74128  74213   86  0  2   82   78    89 0.427   7.59
 3.02 Intr +  83327  83435  109  2  1   68   81    52 0.062   2.79
 3.03 Term +  86046  86150  105  2  0   68   41    89 0.126   0.61
 3.04 PlyA +  86307  86312    6                               1.05

 4.11 PlyA -  86979  86974    6                               1.05
 4.10 Term -  94845  94556  290  1  2   72   42   160 0.699   5.34
 4.09 Intr - 101448 101377   72  1  0   81  109    54 0.531   6.18
 4.08 Intr - 101890 101819   72  2  0  104   80    25 0.844   2.68
 4.07 Intr - 103642 103427  216  2  0   82   91    62 0.597   4.38
 4.06 Intr - 106303 106193  111  2  0   61   94    77 0.981   5.95
 4.05 Intr - 107974 107783  192  2  0  106  119   136 0.973  17.96
 4.04 Intr - 117950 117823  128  1  2   20   78    84 0.087   0.92
 4.03 Intr - 135869 135738  132  1  0   86   61   115 0.734   8.36
 4.02 Intr - 142403 142349   55  0  1   96   41    40 0.583  -1.86
 4.01 Init - 144100 144037   64  1  1   76  110    85 0.911   9.08
 4.00 Prom - 147013 146974   40                              -4.56

 5.06 PlyA - 148820 148815    6                               1.05
 5.05 Term - 153684 153460  225  0  0   33   38   306 0.932  16.88
 5.04 Intr - 153874 153728  147  1  0  101    7   114 0.899   5.03
 5.03 Intr - 159100 159018   83  2  2  102   13    27 0.254  -4.04
 5.02 Intr - 159503 159409   95  1  2  112   34    78 0.423   4.41
 5.01 Init - 159636 159596   41  0  2   95   94    52 0.420   4.24
 5.00 Prom - 164353 164314   40                              -1.76

 6.00 Prom + 173563 173602   40                              -6.06
 6.01 Init + 179015 179137  123  1  0   66   98    88 0.957   7.77
 6.02 Intr + 182317 182445  129  0  0  117   68    16 0.912   3.39
 6.03 Intr + 183220 183336  117  0  0   55  121   112 0.997  11.86
 6.04 Intr + 186880 187046  167  0  2   79   78   140 0.940  10.86
 6.05 Intr + 188090 188187   98  2  2   73   72   100 0.995   6.55
 6.06 Intr + 190635 190691   57  1  0  104   84    22 0.824   2.26
 6.07 Intr + 191935 192076  142  2  1   60   47   134 0.994   5.91
 6.08 Intr + 194159 194310  152  2  2   85   93   264 0.996  26.41
 6.09 Intr + 195457 195530   74  2  2   43   90    39 0.934  -1.27
 6.10 Intr + 195998 196096   99  1  0   65   63   102 0.977   5.71
 6.11 Intr + 197188 197260   73  0  1  101   96    92 0.990  10.28
 6.12 Intr + 201965 202109  145  0  1   87  101    54 0.241   5.94
 6.13 Intr + 217860 217947   88  0  1   77  115    44 0.054   5.97
 6.14 Intr + 221806 221881   76  0  1   70   45   133 0.097   6.29
 6.15 Intr + 222535 222660  126  2  0    8   77   105 0.146   2.05
 6.16 Term + 223456 223640  185  2  2   59   41    98 0.265  -0.09
 6.17 PlyA + 224811 224816    6                              -0.45

 7.06 PlyA - 225796 225791    6                               1.05
 7.05 Term - 226658 226431  228  2  0   91   41   107 0.350   2.93
 7.04 Intr - 227483 227314  170  0  2   82   59    52 0.273   1.37
 7.03 Intr - 233295 233106  190  0  1    5  127   148 0.525   9.56
 7.02 Intr - 233680 233458  223  0  1   43   54    84 0.212  -1.37
 7.01 Init - 235425 235358   68  0  2  106   77    15 0.421   2.75

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 225058 224934  125  2  2   57   39   109 0.882   1.45


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:5918052_6162151|GENSCAN_predicted_peptide_1|419_aa
XIMNIVLSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGAT
ILDVCKRVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIG
PEEERRKREYPPGLGALEGRTQVTGTRKKQAQSESGTRFPPEKGELVLLSSHDEGENLVI
KDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDF
AEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLPQLPHFRVESFSEDEWNLLYVAVTR
AKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGVVRCCVGQCNNAIPVDTVLTMKKLP
ITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQVRAMERTVENIVLPRHEALLFLVF

>gi568815588r:5918052_6162151|GENSCAN_predicted_CDS_1|1260_bp
nctatcatgaacatagttctgtctcagccatgtgggaaaatctttgtaggggacccgcac
cagcagatctataccttccggggtgcggtcaacgccctgttcacagtgccccacacccac
gtcttctatctcacgcagagttttcggtttggtgtggaaatagcttatgtgggagctact
atcttggatgtttgcaagagagtcaggaaaaagactttggttggaggaaaccatcagagt
ggcattagaggtgacgcaaaggggcaagtggccttgttgtcccggaccaacgccaacgtg
tttgatgaggccgtacgggtgacggaaggggaattcccttcaaggatacatttgattggg
ccagaggaagaacggaggaaacgtgagtacccacctggccttggtgcattggaaggacgc
acccaagtgacagggacgagaaagaagcaggcccagtctgagtcagggacccgtttccct
ccagagaagggcgagctagtgttgctgtcttcccatgacgagggggaaaacctcgtcatt
aaagacaaatttatcagaagatgggtgcacaaagaaggctttagtggcttcaagaggtat
gtgaccgctgccgaggacaaggagcttgaagccaagatcgcagttgttgaaaagtataac
atcaggattccagagctggtgcaaaggatagaaaaatgccatatagaagatttggacttt
gcagagtacattctgggcactgtgcacaaagccaaaggcctggagtttgacactgtgcat
gttttggatgattttgtgaaagtgccttgtgcccggcataacctgccccagcttccgcac
ttcagagttgagtcattttctgaggatgaatggaatttactgtatgttgcagtaactcga
gccaagaagcgtctcatcatgaccaaatcattggaaaacattttgactttggctggggag
tacttcttgcaagcagagctgacaagcaacgtcttaaaaacaggcgtggtgcgctgctgc
gtgggacagtgcaacaatgccatccctgttgacaccgtccttaccatgaagaagctgccc
atcacctatagcaacaggaaggaaaacaaggggggctacctctgccactcctgtgcggag
cagcgcatcgggcccctggcgttcctgacagcctccccggagcaggtgcgcgccatggag
cgcactgtggagaacatcgtactgccccggcatgaggccctgctcttcctcgtcttctga

>gi568815588r:5918052_6162151|GENSCAN_predicted_peptide_2|234_aa
MAPRRARGCRTLGLPALLLLLLLRPPATRGITCPPPMSVEHADIWVKSYSLYSRERYICN
SGFKRKAGTSSLTECVLNKATNVAHWTTPSLKCIKPAASSPSSNNTAATTAAIVPGSQLM
PSKSPSTGTTEISSHESSHGTPSQTTAKNWELTASASHQPPGVYPQGHSDTTVAISTSTV
LLCGLSAVSLLACYLKSRQTPPLASVEMEAMEALPVTWGTSSRDEDLENCSHHL

>gi568815588r:5918052_6162151|GENSCAN_predicted_CDS_2|705_bp
atggccccgcggcgggcgcgcggctgccggaccctcggtctcccggcgctgctactgctg
ctgctgctccggccgccggcgacgcggggcatcacgtgccctccccccatgtccgtggaa
cacgcagacatctgggtcaagagctacagcttgtactccagggagcggtacatttgtaac
tctggtttcaagcgtaaagccggcacgtccagcctgacggagtgcgtgttgaacaaggcc
acgaatgtcgcccactggacaacccccagtctcaaatgcattaagcccgcagcttcatct
cccagctcaaacaacacagcggccacaacagcagctattgtcccgggctcccagctgatg
ccttcaaaatcaccttccacaggaaccacagagataagcagtcatgagtcctcccacggc
accccctctcagacaacagccaagaactgggaactcacagcatccgcctcccaccagccg
ccaggtgtgtatccacagggccacagcgacaccactgtggctatctccacgtccactgtc
ctgctgtgtgggctgagcgctgtgtctctcctggcatgctacctcaagtcaaggcaaact
cccccgctggccagcgttgaaatggaagccatggaggctctgccggtgacttgggggacc
agcagcagagatgaagacttggaaaactgctctcaccacctatga

>gi568815588r:5918052_6162151|GENSCAN_predicted_peptide_3|99_aa
MVSALKDSFNRLIHEMNVAEERIGEREERLLPRTRRHLSLQALKEIVCVCTGYYQEHSFI
WTCRLASSEGMFINIVEEEDTCFALHSLRGETEITGKSF

>gi568815588r:5918052_6162151|GENSCAN_predicted_CDS_3|300_bp
atggtctcagctttaaaggattccttcaacaggcttattcatgaaatgaatgtagcagaa
gaaagaattggtgaacgtgaagagaggttattaccaagaacacggcgtcaccttagtctg
caggctctgaaggagatcgtgtgtgtatgtacgggttattaccaagagcacagtttcatc
tggacctgcaggctggctagctctgaaggtatgttcatcaacatcgtagaagaagaggac
acgtgtttcgcactgcactctttaagaggagaaacggaaataacagggaaaagtttttaa

>gi568815588r:5918052_6162151|GENSCAN_predicted_peptide_4|443_aa
MDSYLLMWGLLTFIMVPGCQAGFGGQVVFGYMNKFFSGDLLFPPTLYAVQEQAGAIGLAA
IESFYPKEEERAMFQKNKKEAAARRQPDKAKAPKGCYPSAAYRTPRGNKSTRKDTPMIVY
FSHNDGELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKSGSLYMLCTGNSSHSS
WDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQASLPGHCREPPPWENEA
TERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQPQLICTGEMETSQFPG
EEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQVAGGRVEEQSRKPKE
QEFLGKKPGTDNRSHEAQVKSKVLNGRPGDIRCACLRFGSSEVTSQDTGQWQPCLYASSV
PSESERYPLLNSNFAVEEEGQNH

>gi568815588r:5918052_6162151|GENSCAN_predicted_CDS_4|1332_bp
atggattcatacctgctgatgtggggactgctcacgttcatcatggtgcctggctgccag
gcaggttttggaggacaggtggtgtttggttacatgaataagttctttagtggtgatttg
ctttttcctcccacgctgtatgcagtgcaagaacaagctggtgcaattggactagcagca
attgagtccttttacccaaaagaagaagaaagagcaatgtttcaaaagaataaaaaggaa
gctgcagccaggcgtcagccagacaaggcaaaagctcccaagggatgttacccttcagct
gcatacagaactcctagaggcaacaaatccacaaggaaagatacacccatgatcgtgtat
ttcagccacaatgatggagagctctgtgacgatgacccgccagagatcccacacgccaca
ttcaaagccatggcctacaaggaaggaaccatgttgaactgtgaatgcaagagaggtttc
cgcagaataaaaagcgggtcactctatatgctctgtacaggaaactctagccactcgtcc
tgggacaaccaatgtcaatgcacaagctctgccactcggaacacaacgaaacaagtgaca
cctcaacctgaagaacagaaagaaaggaaaaccacagaaatgcaaagtccaatgcagcca
gtggaccaagcgagccttccaggtcactgcagggaacctccaccatgggaaaatgaagcc
acagagagaatttatcatttcgtggtggggcagatggtttattatcagtgcgtccaggga
tacagggctctacacagaggtcctgctgagagcgtctgcaaaatgacccacgggaagaca
aggtggacccagccccagctcatatgcacaggtgaaatggagaccagtcagtttccaggt
gaagagaagcctcaggcaagccccgaaggccgtcctgagagtgagacttcctgcctcgtc
acaacaacagattttcaaatacagacagaaatggctgcaaccatggagacgtccatattt
acaacagagtaccaggtagcaggaggaagagtagaagaacaatctagaaaaccaaaagaa
caagaatttcttggtaagaagccgggaacagacaacagaagtcatgaagcccaagtgaaa
tcaaaggtgctaaatggtcgcccaggagacatccgttgtgcttgcctgcgttttggaagc
tctgaagtcacatcacaggacacggggcagtggcaaccttgtctctatgccagctcagtc
ccatcagagagcgagcgctacccacttctaaatagcaatttcgccgttgaagaggaaggg
caaaaccactag

>gi568815588r:5918052_6162151|GENSCAN_predicted_peptide_5|196_aa
MVAGPAALRDTGCRREVSSKLEGLFLGVHGEVYPSSAEMDEREHREVDPNQYPAIPNPSP
CLPSECLDSTDDYHCGCTRTPHDDQDPHKEDKKFIQYQSGQYPKISITGRNAEASTTPLD
NRVMGAAEYMLPSGFQKLLVHPVKKPEVLLRCNTSQCAETALNVAPKNCKAILETVAQLP
IGVTNPSAKLCSKEKD

>gi568815588r:5918052_6162151|GENSCAN_predicted_CDS_5|591_bp
atggtggctgggcctgcggctctccgggacacagggtgcagaagagaggtcagcagcaag
ctggagggcctgtttcttggtgtccatggagaagtctatccgagcagtgctgagatggat
gaaagggaacacagagaggttgatcccaatcagtatcctgcaatcccaaatccatctcct
tgtctgccttctgagtgtctagacagcactgatgactatcactgtggctgcactaggacc
cctcatgatgaccaagatcctcataaagaggacaagaagttcatccagtaccagtcaggc
caatatcccaaaattagcataactggcagaaatgcagaggcatcaacaactcctcttgac
aacagggttatgggagcagcagagtacatgctgcccagcggcttccagaagctcctggtc
caccccgtcaagaagccggaggtcctgctgaggtgcaacacatctcagtgtgctgagact
gccctcaatgttgcccccaagaactgcaaagccatcctggaaacagtggcccagctgccc
attggagtcaccaatcccagtgccaagctgtgcagcaaagaaaaggattag

>gi568815588r:5918052_6162151|GENSCAN_predicted_peptide_6|616_aa
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKEGAHCLTWEVFLPKSFTLN
SIRPLTSRFQELQGIEEQAQLNNQSQRTKQSTVLAPVIDLKRGGSSDDRQIVDTPPHVAA
GLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQRQRELERQKEIEEREKR
RKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEED
SRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLGKH
EQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGE
VDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKENPNIPPPPP
CFLLPLPLSPHLQNEDCVDYKLDLCFHQASLIVQLRAVRPNVKYEYAHFTDGQTKVEKLH
ALPKATQMLNNNDDNGNDHNDDDNGNDHNDDDNDSMGAVSLRTGENSRKEPFSSCNEGNR
KLWPRHLLSPEPGHRPRLWRVRCSIPDGSANPTPSALFYRRMDLQRQPFLPGGFAFREGQ
HRTTLSYLTLTSILVG

>gi568815588r:5918052_6162151|GENSCAN_predicted_CDS_6|1851_bp
atgtccctgtacgatgacctaggagtggagaccagtgactcaaaaacagaaggctggtcc
aaaaacttcaaacttctgcagtctcagcttcaggtgaagaaggcagctctcactcaggca
aaggaaggggcacactgcctcacctgggaagtgttcctgcctaaaagctttaccctgaat
tcgatcaggcctttaacctccaggtttcaggaattacaaggcatagaggaacaagctcaa
ctaaataaccagagccaaaggacgaaacaaagtacagtcctcgccccagtcattgacctg
aagcgaggtggctcctcagatgaccggcaaattgtggacactccaccgcatgtagcagct
gggctgaaggatcctgttcccagtgggttttctgcaggggaagttctgattcccttagct
gacgaatatgaccctatgtttcctaatgattatgagaaagtagtgaagcgccaaagagag
gaacgacagagacagcgggagctggaaagacaaaaggaaatagaagaaagggaaaaaagg
cgtaaagacagacatgaagcaagtgggtttgcaaggagaccagatccagattctgatgaa
gatgaagattatgagcgagagaggaggaaaagaagtatgggcggagctgccattgcccca
cccacttctctggtagagaaagacaaagagttaccccgagattttccttatgaagaggac
tcaagacctcgatcacagtcttccaaagcagccattcctcccccagtgtacgaggaacaa
gacagaccgagatctccaaccggacctagcaactccttcctcgctaacatggggggcacg
gtggcgcacaagatcatgcagaagtacggcttccgggagggccagggtctggggaagcat
gagcagggcctgagcactgccttgtcagtggagaagaccagcaagcgtggcggcaagatc
atcgtgggcgacgccacagagaaagatgcatccaagaagtcagattcaaatccgctgact
gaaatacttaagtgtcctactaaagtggtcttactaaggaacatggttggtgcgggagag
gtggatgaagacttggaagttgaaaccaaggaagaatgtgaaaaatatggcaaagttgga
aaatgtgtgatatttgaaattcctggtgcccctgatgatgaagcagtacggatattttta
gaatttgagagagttgaatcagcaattaaagagaatcccaacatcccgcctccacctcct
tgcttcttactgcctcttccactcagcccacacttgcagaatgaggactgcgtcgactac
aaattagacctctgcttccaccaggcctccttgatagttcagctaagagccgtgcgacct
aatgtgaagtatgaatatgcccactttacagacggacaaactaaggtggaaaagttacat
gccttacccaaagccacacaaatgctaaacaataatgatgataatggcaatgatcataat
gatgatgataatggcaatgatcataatgatgatgataatgacagcatgggagccgtcagc
ctacgaactggagagaactccaggaaggagcccttttcttcctgcaatgagggcaaccgg
aagctgtggccacggcacctgctgtccccggagcctgggcaccgaccacggctgtggcga
gttcgttgttcaatcccggatggctcagcaaatccaaccccctccgccctgttctatcgc
cgcatggatctgcagaggcagccgttcctgccgggtggatttgccttccgcgaaggacaa
cacagaaccactctgagttatttgacactgacatcgatcctagttggctga

>gi568815588r:5918052_6162151|GENSCAN_predicted_peptide_7|292_aa
MTSYQPLKASTKDQATQAYPIHMERGGYPPDFPFAPACLIGSFSTAVAGQASGTTSAASG
EDFQNLIARGQYLKQTVTTADQLHPKKAQLSVTPQTESTFRSYSWKGCLRKCQDDQTPLL
FRHLVAAPTRTLDAPGATPPSSDPHTRYHQDSYTLPVGSYGPRAPPPSGSLRVRSPGISA
ARGWSAAGSGNSLQVPPPARARGGGRSRQRGRAGLEEGRPAAPQTRNLPALKLPPVLWTP
RDRGKLVREETNSLFSFGLFRAILPEGRDLREFHLIFTFMSYGHRGHARITS

>gi568815588r:5918052_6162151|GENSCAN_predicted_CDS_7|879_bp
atgacctcctaccagccactcaaagcatctaccaaggaccaagccacacaggcttacccc
attcacatggagcggggagggtaccctcccgacttcccgtttgcccctgcctgcctgatt
ggatctttctccactgctgtggctggacaagcctctgggacgacttcagcagcctcagga
gaggacttccagaatctgatcgccaggggtcagtatctcaagcagacagtcacgacagca
gaccaactccaccctaagaaagcacagttgtcagtcacccctcaaacagagagcaccttc
cggagctacagctggaaaggctgcttgcggaagtgccaggacgaccaaaccccgctgctc
ttcagacaccttgtggctgccccaaccagaaccttggatgctcctggggccacgccccct
agctcagacccgcacacaagataccaccaagactcatacacactgccagtggggagctac
ggaccccgggccccgccgccctccgggtctctccgggtccggagccctggtatatctgcg
gcccggggctggagcgcagcgggaagcgggaattcgctgcaagtgccgcccccggctcgg
gcacgtggtggcggccggagtcgccagaggggacgcgcgggtctggaggaggggcggccc
gcagccccccagacgcggaacttgccggccttgaagctgccgcctgtcttgtggactcca
cgggacaggggaaaactggtccgggaagaaaccaactcccttttctctttcgggctgttc
cgagccatccttcccgaaggacgagacctgagggaattccatcttatttttacttttatg
tcctacgggcacaggggacacgctcgaatcaccagctga