Result of FASTA (ccds) for pF1KE0477
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0477, 305 aa
  1>>>pF1KE0477 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8537+/-0.00085; mu= 12.0553+/- 0.051
 mean_var=60.7481+/-12.367, 0's: 0 Z-trim(105.8): 22  B-trim: 0 in 0/50
 Lambda= 0.164554
 statistics sampled from 8593 (8599) to 8593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS3668.2 PPA2 gene_id:27068|Hs108|chr4           ( 305) 2074 500.8 5.3e-142
CCDS3667.1 PPA2 gene_id:27068|Hs108|chr4           ( 334) 1084 265.8 3.2e-71
CCDS3669.2 PPA2 gene_id:27068|Hs108|chr4           ( 232) 1077 264.1 7.2e-71
CCDS34043.1 PPA2 gene_id:27068|Hs108|chr4          ( 168)  801 198.6 2.8e-51
CCDS7299.1 PPA1 gene_id:5464|Hs108|chr10           ( 289)  642 160.9 1.1e-39


>>CCDS3668.2 PPA2 gene_id:27068|Hs108|chr4                (305 aa)
 initn: 2074 init1: 2074 opt: 2074  Z-score: 2662.9  bits: 500.8 E(32554): 5.3e-142
Smith-Waterman score: 2074; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
              250       260       270       280       290       300

            
pF1KE0 HFLGK
       :::::
CCDS36 HFLGK
            

>>CCDS3667.1 PPA2 gene_id:27068|Hs108|chr4                (334 aa)
 initn: 1077 init1: 1077 opt: 1084  Z-score: 1392.1  bits: 265.8 E(32554): 3.2e-71
Smith-Waterman score: 2006; 91.3% identity (91.3% similar) in 334 aa overlap (1-305:1-334)

               10        20        30        40        50        60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
               70        80        90       100       110       120

              130       140                                    150 
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQ-----------------------------ILSC
       :::::::::::::::::::::::::::                             ::::
CCDS36 VKDGKLRYVANIFPYKGYIWNYGTLPQTWEDPHEKDKSTNCFGDNDPIDVCEIGSKILSC
              130       140       150       160       170       180

             160       170       180       190       200       210 
pF1KE0 GEVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 GEVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRL
              190       200       210       220       230       240

             220       230       240       250       260       270 
pF1KE0 YKVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 YKVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPF
              250       260       270       280       290       300

             280       290       300     
pF1KE0 RCTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
       ::::::::::::::::::::::::::::::::::
CCDS36 RCTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
              310       320       330    

>>CCDS3669.2 PPA2 gene_id:27068|Hs108|chr4                (232 aa)
 initn: 1077 init1: 1077 opt: 1077  Z-score: 1385.8  bits: 264.1 E(32554): 7.2e-71
Smith-Waterman score: 1413; 76.1% identity (76.1% similar) in 305 aa overlap (1-305:1-232)

               10        20        30        40        50        60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
       ::::::::::::::                                              
CCDS36 SPFHDIPLKVNSKE----------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
                                  :::::::::::::::::::::::::::::::::
CCDS36 ---------------------------ILSCGEVIHVKILGILALIDEGETDWKLIAINA
                                      80        90       100       

              190       200       210       220       230       240
pF1KE0 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
       110       120       130       140       150       160       

              250       260       270       280       290       300
pF1KE0 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
       170       180       190       200       210       220       

            
pF1KE0 HFLGK
       :::::
CCDS36 HFLGK
       230  

>>CCDS34043.1 PPA2 gene_id:27068|Hs108|chr4               (168 aa)
 initn: 801 init1: 801 opt: 801  Z-score: 1034.1  bits: 198.6 E(32554): 2.8e-51
Smith-Waterman score: 854; 54.8% identity (55.1% similar) in 305 aa overlap (1-305:1-168)

               10        20        30        40        50        60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS34 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFF--------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
                                                                   
CCDS34 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
                                                                   
CCDS34 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE0 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
                .::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ---------NIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
                      60        70        80        90       100   

              250       260       270       280       290       300
pF1KE0 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
           110       120       130       140       150       160   

            
pF1KE0 HFLGK
       :::::
CCDS34 HFLGK
            

>>CCDS7299.1 PPA1 gene_id:5464|Hs108|chr10                (289 aa)
 initn: 1105 init1: 640 opt: 642  Z-score: 826.1  bits: 160.9 E(32554): 1.1e-39
Smith-Waterman score: 1031; 54.3% identity (74.2% similar) in 291 aa overlap (32-293:1-272)

              10        20        30        40        50        60 
pF1KE0 SALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYIS
                                     :. . ::::. : : .::.:.::  :.:::
CCDS72                               MSGFSTEERAAPFSLEYRVFLKNEKGQYIS
                                             10        20        30

              70        80        90       100       110       120 
pF1KE0 PFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQYV
       ::::::. ..                 ...:.:.::.:::.:::::::::.:.::::: :
CCDS72 PFHDIPIYAD-----------------KDVFHMVVEVPRWSNAKMEIATKDPLNPIKQDV
               40                         50        60        70   

             130       140                           150           
pF1KE0 KDGKLRYVANIFPYKGYIWNYGTLPQ--------------------ILSC---------G
       : ::::::::.:::::::::::..::                    :  :         :
CCDS72 KKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARG
            80        90       100       110       120       130   

            160       170       180       190       200       210  
pF1KE0 EVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRLY
       :.: ::.:::::.:::::::::.::::..::.:....::.:::..::::::::..::: :
CCDS72 EIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRY
           140       150       160       170       180       190   

            220       230       240       250       260       270  
pF1KE0 KVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPFR
       :::::::::.::::.:::.: ::...:::::. ::::. :: :: .:.: :. .:.:::.
CCDS72 KVPDGKPENEFAFNAEFKDKDFAIDIIKSTHDHWKALVTKKTNGKGISCMNTTLSESPFK
           200       210       220       230       240       250   

            280       290       300          
pF1KE0 CTQEEARSLVESVSSSPNKESNEEEQVWHFLGK     
       :  . ::..:...   :  ::                 
CCDS72 CDPDAARAIVDALP--PPCESACTVPTDVDKWFHHQKN
           260         270       280         




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:27:57 2016 done: Thu Nov  3 05:27:57 2016
 Total Scan time:  2.440 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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