Result of FASTA (omim) for pF1KE0372
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0372, 565 aa
  1>>>pF1KE0372 565 - 565 aa - 565 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1548+/-0.000474; mu= 13.6346+/- 0.029
 mean_var=67.6189+/-13.866, 0's: 0 Z-trim(109.6): 57  B-trim: 72 in 1/50
 Lambda= 0.155970
 statistics sampled from 17745 (17786) to 17745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.577), E-opt: 0.2 (0.209), width:  16
 Scan time:  8.300

The best scores are:                                      opt bits E(85289)
NP_694996 (OMIM: 611916) collagen alpha-5(VI) chai (2526) 3782 860.6       0
XP_011510923 (OMIM: 611916) PREDICTED: collagen al (2594) 3767 857.3       0
NP_001265227 (OMIM: 611916) collagen alpha-5(VI) c (2614) 3767 857.3       0
XP_011510728 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_016861202 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_011510727 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_005247178 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_016861200 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_016861204 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_016861201 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_011510730 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
XP_016861203 (OMIM: 616613) PREDICTED: collagen al (2263) 1006 236.0   1e-60
NP_001096078 (OMIM: 616613) collagen alpha-6(VI) c (2263) 1006 236.0   1e-60
XP_011510726 (OMIM: 616613) PREDICTED: collagen al (2279) 1006 236.0   1e-60
XP_011510725 (OMIM: 616613) PREDICTED: collagen al (2279) 1006 236.0   1e-60
XP_016858793 (OMIM: 120250,158810,254090,616411) P (2375)  341 86.3 1.2e-15
NP_476507 (OMIM: 120250,158810,254090,616411) coll (2570)  341 86.4 1.3e-15
XP_005246123 (OMIM: 120250,158810,254090,616411) P (2770)  341 86.4 1.3e-15
NP_476508 (OMIM: 120250,158810,254090,616411) coll (2971)  341 86.4 1.4e-15
XP_016858792 (OMIM: 120250,158810,254090,616411) P (2971)  341 86.4 1.4e-15
XP_005246122 (OMIM: 120250,158810,254090,616411) P (2977)  341 86.4 1.4e-15
XP_006712316 (OMIM: 120250,158810,254090,616411) P (3010)  341 86.4 1.5e-15
XP_011508876 (OMIM: 120250,158810,254090,616411) P (3176)  341 86.4 1.5e-15
NP_004360 (OMIM: 120250,158810,254090,616411) coll (3177)  341 86.4 1.5e-15
NP_001839 (OMIM: 120220,158810,254090) collagen al (1028)  157 44.9  0.0015


>>NP_694996 (OMIM: 611916) collagen alpha-5(VI) chain is  (2526 aa)
 initn: 3782 init1: 3782 opt: 3782  Z-score: 4586.3  bits: 860.6 E(85289):    0
Smith-Waterman score: 3782; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:1962-2526)

                                             10        20        30
pF1KE0                               MDVVFLIDNSRNIAKDEFKAVKALVSSVID
                                     ::::::::::::::::::::::::::::::
NP_694 LERLRRCALCYDKCFPNACIREAFLPEDSYMDVVFLIDNSRNIAKDEFKAVKALVSSVID
            1940      1950      1960      1970      1980      1990 

               40        50        60        70        80        90
pF1KE0 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
            2000      2010      2020      2030      2040      2050 

              100       110       120       130       140       150
pF1KE0 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
            2060      2070      2080      2090      2100      2110 

              160       170       180       190       200       210
pF1KE0 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
            2120      2130      2140      2150      2160      2170 

              220       230       240       250       260       270
pF1KE0 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
            2180      2190      2200      2210      2220      2230 

              280       290       300       310       320       330
pF1KE0 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
            2240      2250      2260      2270      2280      2290 

              340       350       360       370       380       390
pF1KE0 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
            2300      2310      2320      2330      2340      2350 

              400       410       420       430       440       450
pF1KE0 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
            2360      2370      2380      2390      2400      2410 

              460       470       480       490       500       510
pF1KE0 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
            2420      2430      2440      2450      2460      2470 

              520       530       540       550       560     
pF1KE0 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW
            2480      2490      2500      2510      2520      

>>XP_011510923 (OMIM: 611916) PREDICTED: collagen alpha-  (2594 aa)
 initn: 3767 init1: 3767 opt: 3767  Z-score: 4567.8  bits: 857.3 E(85289):    0
Smith-Waterman score: 3767; 100.0% identity (100.0% similar) in 564 aa overlap (1-564:1941-2504)

                                             10        20        30
pF1KE0                               MDVVFLIDNSRNIAKDEFKAVKALVSSVID
                                     ::::::::::::::::::::::::::::::
XP_011 LERLRRCALCYDKCFPNACIREAFLPEDSYMDVVFLIDNSRNIAKDEFKAVKALVSSVID
             1920      1930      1940      1950      1960      1970

               40        50        60        70        80        90
pF1KE0 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
             1980      1990      2000      2010      2020      2030

              100       110       120       130       140       150
pF1KE0 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
             2040      2050      2060      2070      2080      2090

              160       170       180       190       200       210
pF1KE0 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
             2100      2110      2120      2130      2140      2150

              220       230       240       250       260       270
pF1KE0 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
             2160      2170      2180      2190      2200      2210

              280       290       300       310       320       330
pF1KE0 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
             2220      2230      2240      2250      2260      2270

              340       350       360       370       380       390
pF1KE0 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
             2280      2290      2300      2310      2320      2330

              400       410       420       430       440       450
pF1KE0 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
             2340      2350      2360      2370      2380      2390

              460       470       480       490       500       510
pF1KE0 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
             2400      2410      2420      2430      2440      2450

              520       530       540       550       560          
pF1KE0 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW     
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
XP_011 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLLLPGIY
             2460      2470      2480      2490      2500      2510

XP_011 EIKTENGDLFDEFDSQAQHLLVLGNNHSSGSETATDLMQKLYLLFSTEKLAMKDKEKAHL
             2520      2530      2540      2550      2560      2570

>>NP_001265227 (OMIM: 611916) collagen alpha-5(VI) chain  (2614 aa)
 initn: 3767 init1: 3767 opt: 3767  Z-score: 4567.8  bits: 857.3 E(85289):    0
Smith-Waterman score: 3767; 100.0% identity (100.0% similar) in 564 aa overlap (1-564:1962-2525)

                                             10        20        30
pF1KE0                               MDVVFLIDNSRNIAKDEFKAVKALVSSVID
                                     ::::::::::::::::::::::::::::::
NP_001 LERLRRCALCYDKCFPNACIREAFLPEDSYMDVVFLIDNSRNIAKDEFKAVKALVSSVID
            1940      1950      1960      1970      1980      1990 

               40        50        60        70        80        90
pF1KE0 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFNIASDPLISDSGDRIALLSYSPWESSRRKMGTVKTEFDFITYDNQLLMKNHIQTSFQQ
            2000      2010      2020      2030      2040      2050 

              100       110       120       130       140       150
pF1KE0 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNGEATIGRALLWTTENLFPETPYLRKHKVIFVVSAGENYERKEFVKMMALRAKCQGYVI
            2060      2070      2080      2090      2100      2110 

              160       170       180       190       200       210
pF1KE0 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVISLGSTRKDDMEELASYPLDQHLIQLGRIHKPDLNYIAKFLKPFLYSVRRGFNQYPPP
            2120      2130      2140      2150      2160      2170 

              220       230       240       250       260       270
pF1KE0 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLEDACRLINLGGENIQNDGFQFVTELQEDFLGGNGFIGQELNSGRESPFVKTEDNGSDY
            2180      2190      2200      2210      2220      2230 

              280       290       300       310       320       330
pF1KE0 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVYLPSQMFEPQKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMD
            2240      2250      2260      2270      2280      2290 

              340       350       360       370       380       390
pF1KE0 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAFLIDASQRVGSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTE
            2300      2310      2320      2330      2340      2350 

              400       410       420       430       440       450
pF1KE0 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ECPVYLEFDLVTYNSIHQMKHHLQDSQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIF
            2360      2370      2380      2390      2400      2410 

              460       470       480       490       500       510
pF1KE0 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VISAGETNSLDKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGR
            2420      2430      2440      2450      2460      2470 

              520       530       540       550       560          
pF1KE0 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW     
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
NP_001 THKPDWNYIIKFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLLLPGIY
            2480      2490      2500      2510      2520      2530 

NP_001 EIKTENGDLFDEFDSQAQHLLVLGNNHSSGSETATDLMQKLYLLFSTEKLAMKDKEKAHL
            2540      2550      2560      2570      2580      2590 

>>XP_011510728 (OMIM: 616613) PREDICTED: collagen alpha-  (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1211.2  bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
XP_011 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
XP_011 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_011 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
XP_011 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
XP_011 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

XP_011 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   

>>XP_016861202 (OMIM: 616613) PREDICTED: collagen alpha-  (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1211.2  bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   

>>XP_011510727 (OMIM: 616613) PREDICTED: collagen alpha-  (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1211.2  bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
XP_011 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
XP_011 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_011 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
XP_011 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
XP_011 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

XP_011 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   

>>XP_005247178 (OMIM: 616613) PREDICTED: collagen alpha-  (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1211.2  bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
XP_005 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
XP_005 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_005 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
XP_005 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
XP_005 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

XP_005 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   

>>XP_016861200 (OMIM: 616613) PREDICTED: collagen alpha-  (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1211.2  bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   

>>XP_016861204 (OMIM: 616613) PREDICTED: collagen alpha-  (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1211.2  bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   

>>XP_016861201 (OMIM: 616613) PREDICTED: collagen alpha-  (2263 aa)
 initn: 1137 init1: 644 opt: 1006  Z-score: 1211.2  bits: 236.0 E(85289): 1e-60
Smith-Waterman score: 1006; 59.2% identity (83.7% similar) in 245 aa overlap (312-555:1947-2191)

             290       300       310       320       330       340 
pF1KE0 QKLMINYEKDQKSAEIASLTSGHENYGRKEEPDHTYEPGDVSLQEYYMDVAFLIDASQRV
                                     .:: . . .     . :::.:::.:::. .
XP_016 TFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNM
       1920      1930      1940      1950      1960      1970      

             350       360       370       380       390       400 
pF1KE0 GSDEFKEVKAFITSVLDYFHIAPTPLTSTLGDRVAVLSYSPPGYMPNTEECPVYLEFDLV
       :: ::....::. ..::.:.:.: : ::. :::::.::..:: ..:::.. ::  ::.:.
XP_016 GSAEFEDIRAFLGALLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLT
       1980      1990      2000      2010      2020      2030      

             410        420       430       440       450       460
pF1KE0 TYNSIHQMKHHLQDS-QQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFVISAGETNSL
       :: : . ::.:...: .:::::.:::::::::.::::..:::::.::::::::::::. :
XP_016 TYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHL
       2040      2050      2060      2070      2080      2090      

              470       480       490       500       510       520
pF1KE0 DKDVLRNVSLRAKCQGYSIFVFSFGPKHNDKELEELASHPLDHHLVQLGRTHKPDWNYII
       : ..:.. :::::::::..::::.::  .:::::.::::::::::::::: :::: .: .
XP_016 DGEILKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGV
       2100      2110      2120      2130      2140      2150      

              530       540       550       560                    
pF1KE0 KFVKPFVHLIRRAINKYPTEDMKATCVNMTSPNPENGGTENTVLW               
       :::: :.. :::::::::  ..:  :  ..: .:.                         
XP_016 KFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSFVPGPLKATLKEDVLQK
       2160      2170      2180      2190      2200      2210      

XP_016 AKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD
       2220      2230      2240      2250      2260   




565 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:37:54 2016 done: Thu Nov  3 13:37:56 2016
 Total Scan time:  8.300 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com