GENSCAN 1.0	Date run:  3-Nov-116	Time: 17:31:53

Sequence gi568815577f:39665537_39901354 : 235818 bp : 43.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   9552   9763  212  2  2   60   32   113 0.352   0.61
 1.02 Term +  15062  15233  172  2  1   72   47   112 0.679   2.80
 1.03 PlyA +  15563  15568    6                               1.05

 2.00 Prom +  20058  20097   40                              -4.16
 2.01 Init +  30787  30853   67  0  1   69   75    49 0.412   3.02
 2.02 Term +  35881  36047  167  2  2   53   48   125 0.209   3.08
 2.03 PlyA +  36079  36084    6                              -0.45

 3.00 Prom +  37138  37177   40                              -5.46
 3.01 Init +  43737  43750   14  2  2   92  101     5 0.929   1.95
 3.02 Term +  43955  44075  121  2  1  107   39   123 0.926   7.25
 3.03 PlyA +  45930  45935    6                               1.05

 4.00 Prom +  54770  54809   40                              -1.86
 4.01 Init +  80616  80762  147  2  0   75  113   106 0.536  11.89
 4.02 Intr +  98684  98720   37  1  1  112   72    13 0.559  -0.06
 4.03 Intr +  99999 100316  318  1  0   61   93   390 0.906  32.73
 4.04 Intr + 105380 105679  300  0  0  104  115   125 0.864  13.51
 4.05 Term + 111583 111740  158  2  2   82   33    89 0.254   0.90
 4.06 PlyA + 113212 113217    6                               1.05

 5.03 PlyA - 113543 113538    6                              -0.45
 5.02 Term - 113752 113683   70  0  1   77   48   168 0.113   9.11
 5.01 Init - 120305 119902  404  2  2   60   39   184 0.060   6.80
 5.00 Prom - 121856 121817   40                              -4.56

 6.00 Prom + 124132 124171   40                              -4.86
 6.01 Init + 126446 126563  118  1  1   64  109    74 0.360   7.46
 6.02 Intr + 127933 128077  145  2  1   38   68    31 0.225  -4.56
 6.03 Intr + 130660 130827  168  1  0   63   79    87 0.017   4.36
 6.04 Intr + 140098 140210  113  1  2   89   81    21 0.022   1.52
 6.05 Intr + 153589 153696  108  2  0   68   48    62 0.311   0.46
 6.06 Term + 154705 154778   74  2  2  104   50    35 0.435  -0.63
 6.07 PlyA + 155232 155237    6                               1.05

 7.00 Prom + 159114 159153   40                              -3.96
 7.01 Sngl + 175144 175491  348  0  0   59   43   214 0.699   8.06
 7.02 PlyA + 178678 178683    6                               1.05

 8.05 PlyA - 180159 180154    6                               1.05
 8.04 Term - 184347 184282   66  0  0  127   32    26 0.253  -1.16
 8.03 Intr - 191068 190941  128  2  2   53   80   111 0.385   7.20
 8.02 Intr - 194511 194396  116  2  2   71   98     8 0.366   0.19
 8.01 Init - 194689 194547  143  1  2  101   29    66 0.323   1.61
 8.00 Prom - 198409 198370   40                              -7.76

 9.04 PlyA - 198633 198628    6                               1.05
 9.03 Term - 199157 198986  172  1  1  111   53   223 0.988  18.40
 9.02 Intr - 200836 200695  142  2  1   85  -12   101 0.009  -0.79
 9.01 Intr - 217912 217826   87  2  0   64   93    49 0.100   2.94

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  74308  74116  193  0  1   86   43   151 0.974   7.29
S.002 Intr - 200836 200716  121  2  1   85   53   102 0.949   5.95


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_1|127_aa
GTTDESASTTDLGSLTVLEAGVPDQAVTGLVPPETPLLGLQMTSSPCVLMGPSFFVCVLI
SCPYKDTCLIGVYSFTYIKKGNDKTASGRSFRRYPEEGIVIIGDGCSMPVGQDVQVEDSD
MDDSDLV

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_1|384_bp
ggcaccacagacgagtcggcttcaacaacagacctcggttctctcacagtcctggaggct
ggcgtcccagatcaagccgtcacagggctggttcctcctgagacccctctcctgggcttg
cagatgacatcttccccttgtgtcctcatggggccatccttctttgtctgtgtcctcatc
tcctgtccttacaaggacacctgtctgataggagtgtactcttttacttatattaagaaa
ggtaacgataaaacagcctcaggcaggtccttcaggaggtatccagaagaaggcattgtt
atcatcggagatggctgctccatgccagtgggacaagatgtgcaggtggaagacagtgat
atggatgattctgaccttgtgtag

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_2|77_aa
MNGVIFHLAGCFHTSHPLQAAVDVIAGGAAVIFSPLESHDDDDDEAEDSKHLMSSFVGFG
LLPLNSMLCEKINLVTC

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_2|234_bp
atgaatggagtaattttccacctggctggctgcttccacacctctcacccgctgcaggca
gcagtagatgtaatagctggaggagcagcagtcatcttttcgcctttagaatcacatgac
gatgatgatgatgaagctgaagacagtaaacaccttatgagcagctttgttggctttgga
cttttacccttaaactcgatgttatgtgagaaaattaaccttgttacttgttga

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_3|44_aa
MAYTWESTLGKQQSKMLLERSPNPDPKRRFLDLVQEGIQGESMQ

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_3|135_bp
atggcttacacatgggaatccactctggggaagcaacagtccaagatgttactggaaagg
agtcccaatccagatcccaagagaaggttcttggatctcgtgcaagaaggaattcagggc
gagtccatgcagtaa

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_4|319_aa
MQEQWRAFSLIGSGNGRLTGSGAQQILCRIWRNGSQRRVCDGGKQQWWTGQFSPHNVPGY
TGSGSGNEVIEGPQNARVLKGSQARFNCTVSQGWKLIMWALSDMVVLSVRPMEPIITNDR
FTSQRYDQGGNFTSEMIIHNVEPSDSGNIRCSLQNSRLHGSAYLTVQVMGELFIPSVNLV
VAENEPCEVTCLPSHWTRLPDISWELGLLVSHSSYYFVPEPSDLQSAVSILALTPQSNGT
LTCVATWKSLKARKSATVNLTVIRCPQGNLKFSLSHKAPTQWSNLQLKTVKIMDPTLDFT
ILLSHLWEGECESILSCRG

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_4|960_bp
atgcaggaacaatggcgagcctttagcctgattggaagtggcaatgggcgcctcactgga
tcaggagcacagcagatactctgccggatctggaggaatggaagtcagcggcgggtctgc
gatggtggcaaacagcagtggtggacggggcagtttagcccccacaatgtgcctgggtac
acaggttctgggtctggtaatgaagtcatagaaggcccccaaaatgcaagagtcctgaag
ggctcccaggctcgcttcaactgcaccgtctcccagggctggaagctcatcatgtgggct
ctcagtgacatggtggtgctaagcgtcaggcccatggagcccatcatcaccaatgaccgc
ttcacctctcagaggtacgaccagggcgggaacttcacctcggagatgatcatccacaat
gtggagcccagtgattcggggaacatcagatgcagcctccagaacagtcgcctgcatgga
tctgcttaccttaccgtccaagttatgggagagctgttcattcccagtgttaatcttgta
gtcgctgagaatgaaccttgtgaagttacttgtctaccctcacactggacccggctcccg
gatatttcctgggagctcggtctcctggtcagccattcaagctattattttgttccggag
cccagcgaccttcaaagtgcagtgagcatcctggctctgaccccacagagcaatgggact
ttgacttgcgtggctacctggaagagcctgaaggcccgcaagtctgcaactgtaaatctc
actgtgattcggtgtccccaaggaaacctaaagttctcgctcagtcacaaagctcccaca
cagtggtccaaccttcaactcaagactgtgaagatcatggatccaactctggacttcacc
attttattatcacatctgtgggagggggagtgtgagagcatcctgtcatgtcgtgggtag

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_5|157_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIM
KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKGGGITLP
DFKLYYKATVTKTACRNNNGSSSCSHNNDGGSSSSVL

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_5|474_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccagctt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaa
gaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatg
aaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctacca
atgactttcttcactgaattggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccacatcgccaaatcaatcctaagccaaaagaacaaaggtggaggcatcacactacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatgcagaaacaacaacggc
agcagcagttgcagccacaacaacgacggcggcagcagcagcagcgtattgtaa

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_6|241_aa
MNIKWSNCRKSEKEKTNKETETESGNENSGYNSDEQKTTELLEHTAWFLPLNDSKIVLLL
QTPLLSLPNPVNPVILNKETVAVALLTREDIDLVVVNWPLESCQNSEATACRSSQGDAGT
EVPFKNFPRPGPVALQPCQAYVTSLLLVPPPDHAQPEPEVLETISVVRMGQSPGRTVLDT
EGGSSHSLRGLNLPALPYQADTSTVSSGISTIISKTPCLSSSSGYFSLLAKGYNIHVILT
S

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_6|726_bp
atgaacataaaatggtctaattgtaggaaatctgaaaaagagaagacaaacaaagaaact
gagacagaaagtggaaatgaaaactccggctacaattcagatgaacaaaagaccacagaa
ttgttagagcacacagcttggtttttgccacttaatgactctaaaattgttcttctgttg
cagacaccgcttctctccctcccaaatcctgtgaatccagtgatcctgaacaaagaaaca
gtagctgtggccctcctcaccagagaagacatagaccttgttgtggtcaactggccactt
gagagctgccagaatagtgaagctacagcttgtagaagcagtcagggtgacgctggtaca
gaggttccttttaagaacttccccagaccaggccccgtagccctgcagccctgccaggcc
tatgtcaccagtctcttgcttgtgcctccccctgatcacgcccaaccagagccagaggtc
ctggagaccatcagtgtagtccgtatgggtcagtcccctgggaggactgtgctggataca
gaaggaggttcttcacattccttaagaggactcaatcttccagcccttccttaccaagca
gatacttccactgtgtcctctggaatcagcactatcatcagcaaaaccccgtgcctcagc
tcatcttctggttacttctccttgctcgctaaaggttataacattcatgtcattcttact
agctag

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_7|115_aa
MPHLQFHLASSLMGSCLLPVTCKAGTPCQGEHCFFSEATQSASHNEAKRFSLLLHGIGVN
PRKQALRRSLELLASSQDGLPLQMPPHWLQMSLSLPHREEDAALRRFYLQTFPSN

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_7|348_bp
atgcctcacctccagttccatctcgcaagcagcctgatgggcagctgcctgcttcctgtc
acctgcaaagcaggtacgccttgccagggtgagcactgtttcttctcggaggcaacacag
tcagcctcacacaacgaagcgaaaagattctcactcctgctgcacggcattggtgtcaac
cctcgcaaacaagccctgcgtcgttccctggagcttttggcatcttcccaggacgggctt
cccttacaaatgcctcctcactggctgcagatgagcctgtctttgccacacagggaggag
gacgctgctctaagacgattttacctccaaaccttccccagcaattag

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_8|150_aa
MATSGCGNQGPRVESMPQWIHHESLEKCDEGIAFTKATRDVLIEGPQKTGLGIGEATTEP
GSLIATGMAGSRNNRGWVATITHQKQVWALQKPDSLKDVSGVLQTQSSGSPNCICCIFAR
GEQHGSRYMDPCNYSGPTEIIQKIFSSQNP

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_8|453_bp
atggcaacaagtggatgtgggaaccaagggcctagagttgagagcatgccacagtggata
caccatgaaagtctggaaaagtgcgatgagggcattgcctttaccaaagcaacaagggac
gtgctaatagagggacctcaaaagacaggactgggcataggggaagccactacagaacca
ggctccctgatagcaacaggcatggcaggatctagaaataatagaggctgggtggcaaca
atcacccatcaaaagcaagtgtgggctctacagaaaccagacagcctgaaggatgtcagt
ggagtgcttcaaactcagtcgagtggcagccccaactgcatctgctgcatctttgctaga
ggagagcaacatggctccaggtacatggacccttgtaactacagtgggcccaccgagata
attcagaaaatcttctcatcacaaaatccctaa

>gi568815577f:39665537_39901354|GENSCAN_predicted_peptide_9|133_aa
XRENTGGGNADDKEEMWMEDWENSVALLQGHRCDHILRSTLDSKQKAMRPQMGTGEHRLP
SEALARSTSWSAPSPTAWALGRHLLPFILVGQYYPNKTSYQIKNAKDYLDLFIAYPGTRT
VNEQSFNLFLWFR

>gi568815577f:39665537_39901354|GENSCAN_predicted_CDS_9|402_bp
naaagggaaaatacaggaggagggaacgctgatgacaaagaagaaatgtggatggaagac
tgggagaactcagtggccctgttacaaggtcaccgatgcgaccacatcctcaggtccacc
ttggacagcaagcagaaggccatgcgcccccaaatgggcaccggcgagcacaggctgccc
tcagaggccttggccaggagcaccagctggtcagcaccctcgcccacagcatgggccctg
ggacgacatctcctcccattcatcctcgtgggacagtactaccccaataagaccagttac
cagatcaagaacgccaaagactacctggacctcttcatagcatatccagggacaaggaca
gtcaatgagcaatctttcaaccttttcctgtggttccgatga