GENSCAN 1.0 Date run: 3-Nov-116 Time: 17:33:58 Sequence gi568815587f:56076618_56277553 : 200936 bp : 34.74% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.00 Prom + 11900 11939 40 -3.05 1.01 Sngl + 16691 17623 933 1 0 36 48 175 0.339 4.50 1.02 PlyA + 18173 18178 6 1.05 2.00 Prom + 25400 25439 40 -3.95 2.01 Sngl + 28426 29364 939 0 0 85 32 228 0.572 13.15 2.02 PlyA + 29802 29807 6 1.05 3.00 Prom + 36966 37005 40 -4.35 3.01 Sngl + 45756 46694 939 2 0 85 33 304 0.740 20.85 3.02 PlyA + 47108 47113 6 1.05 4.04 PlyA - 47585 47580 6 1.05 4.03 Term - 61121 60154 968 0 2 102 28 298 0.605 16.42 4.02 Intr - 70558 70381 178 1 1 24 81 106 0.005 2.07 4.01 Init - 83700 83269 432 0 0 48 56 214 0.171 10.48 4.00 Prom - 83773 83734 40 -8.05 5.00 Prom + 91539 91578 40 -5.65 5.01 Init + 100001 100757 757 1 1 28 37 307 0.042 14.51 5.02 Intr + 103603 103746 144 2 0 88 58 109 0.020 7.23 5.03 Term + 115911 116095 185 1 2 64 44 122 0.426 2.12 5.04 PlyA + 116325 116330 6 1.05 6.03 PlyA - 116818 116813 6 1.05 6.02 Term - 128671 128504 168 1 0 48 47 246 0.434 13.40 6.01 Init - 128913 128911 3 0 0 65 115 0 0.404 0.45 6.00 Prom - 131318 131279 40 -6.75 7.02 PlyA - 131585 131580 6 1.05 7.01 Sngl - 134963 134256 708 2 0 55 36 499 0.915 37.37 7.00 Prom - 136962 136923 40 -3.45 8.00 Prom + 139040 139079 40 -7.35 8.01 Sngl + 143963 144169 207 1 0 71 54 234 0.666 13.24 8.02 PlyA + 145117 145122 6 1.05 9.00 Prom + 145286 145325 40 -6.15 9.01 Sngl + 145379 146074 696 1 0 49 37 191 0.377 6.05 9.02 PlyA + 146094 146099 6 1.05 10.02 PlyA - 147849 147844 6 1.05 10.01 Sngl - 156445 155489 957 1 0 84 32 314 0.956 21.78 10.00 Prom - 175672 175633 40 -3.95 11.00 Prom + 180435 180474 40 -3.35 11.01 Init + 180613 180688 76 0 1 86 99 68 0.945 9.00 11.02 Term + 184404 184504 101 1 2 110 49 34 0.330 -0.99 11.03 PlyA + 184724 184729 6 1.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Sngl - 75792 75448 345 0 0 95 32 169 0.912 7.82 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_1|310_aa MAGNNFTEVTVFILSGFANHPELQVSLFLMFLFIYLFTVLGNLGLITLIRMDSQLHTPMY FFLSNLAFIDIFYSSTVTPKALVNFQSNRRSISFVGCFVQMYFFVGLVCCECFLLGSMAY NRYIAICNPLLYSVVMSQKVSNWLGVMPYVIGFTSSLISVWVISSLAFCDSSINHFFCDT TALLALSCVDTFGTEMVSFVLAGFTLLSSLLIITVTYIIIISAILRIQSAAGRQKAFSTC ASHLMAVTIFYGSLIFTYLQPDNTSSLTQAQVASVFYTIVIPMLNPLIYSLRNKDVKNAL LRVIHRKLFP >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_1|933_bp atggctggcaacaatttcactgaggttaccgtcttcatcctctctggatttgcaaatcac cctgaattacaagtcagtcttttcttgatgtttctcttcatttatctattcactgttttg ggaaacctgggactgatcacgttaatcagaatggattctcagcttcacacccctatgtac tttttcctgagcaatttagcatttattgacatattttactcctctactgtaacacctaag gcattggtgaatttccaatccaatcggagatccatctcctttgttggctgctttgttcaa atgtacttttttgttggattggtgtgttgtgagtgtttccttctgggatcaatggcctac aatcgctacatagcaatctgcaatcccttactgtattcagtagtcatgtcccaaaaagtg tccaactggctgggagtaatgccatatgtgataggcttcacaagctcgctgatatctgtc tgggtgataagcagtttggcgttctgtgattccagcatcaatcattttttttgtgacacc acagctcttttagcactctcctgtgtagatacattcggcacagaaatggtgagctttgtc ttagctggattcactcttcttagctctctccttatcatcacagtcacttatatcatcatc atctcagccatcctgaggatccagtcagcagcaggcaggcagaaggccttctccacctgc gcatcccacctcatggctgtaactatcttttatgggtctctgattttcacctatttgcaa cctgataacacatcatcgctgacccaggcgcaggtggcatctgtattctatacgattgtc attcccatgctgaatccactcatctacagtctgaggaacaaagatgtgaaaaatgctctt ctgagagtcatacatagaaaactttttccatga >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_2|312_aa MMGRRNNTNVADFILMGLTLSEEIQMALFMLFLLIYLITMLGNVGMILIIRLDLQLHTPM YFFLTHLSFIDLSYSTVVTPKTLANLLTSNYISFTGCFAQMFFFAFLGTAECYLLSSMAH DRYAAICSPLHYTVIMSKRLCLALITGPYVIGFIDSFVNVVSMSRLHFYDSNVIHHFFCD TSPILALSCTDTYNTEILIFIIVGSTLMVSLFTISASYVFILFTILKINSTSGKQKAFST CVSHLLGVTIFYSTLIFTYLKPRKSYSLGRDQVASVFYTIVIPVLNPLIYSLRNKEVKNA VIRVMQRRQDSR >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_2|939_bp atgatgggtagaaggaataacacaaatgtggctgacttcatccttatgggactgacactt tctgaagagatccagatggctctgtttatgctatttctcctgatatacctaattactatg ctggggaatgtggggatgatattgataatccgcctggacctccagcttcacactcccatg tattttttccttactcacctgtcatttattgacctcagttactcaactgtcgtcacacct aaaaccttagcgaacttactgacttccaactatatttcctttacgggctgctttgcccag atgttcttttttgccttcttgggtactgctgaatgttaccttctctcctcaatggcccat gatcgctatgcagcgatctgcagtcctctacactacacagttattatgtccaaaaggctc tgcctcgctctcatcactgggccttatgtgattggctttatagactcctttgtcaacgtg gtttccatgagcagattgcatttctacgactcaaacgtaattcatcactttttctgtgac acttccccaattttagctctgtcctgcactgatacatacaacaccgaaatcctgatattc attattgttggttccaccctgatggtgtcccttttcacaatatctgcatcctatgtgttc attctctttaccatcctgaaaattaattccacttcaggaaagcagaaagctttctctact tgcgtctctcatctcttgggagtcaccatcttttatagcactctgatttttacttattta aaaccaagaaagtcttattccttgggaagagatcaagtggcttctgttttttatactatt gtgattcccgtgctgaatccactcatttatagtcttagaaacaaagaggtgaaaaatgct gtcatcagagtcatgcagagaagacaggactccaggtaa >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_3|312_aa MMGRRNDTNVADFILTGLSDSEEVQMALFMLFLLIYLITMLGNVGMLLIIRLDLQLHTPM YFFLTHLSFIDLSYSTVVTPKTLANLLTSNYISFTGCFAQMFCFVFLGTAECYLLSSMAY DRYAAICSPLHYTVIMPKRLCLALITGPYVIGFMDSFVNVVSMSRLHFCDSNIIHHFFCD TSPILALSCTDTDNTEMLIFIIAGSTLMVSLITISASYVSILSTILKINSTSGKQKAFST CVSHLLGVTIFYGTMIFTYLKPRKSYSLGRDQVAPVFYTIVIPMLNPLIYSLRNREVKNA LIRVMQRRQDSR >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_3|939_bp atgatgggtagaaggaatgacacaaatgtggctgacttcatccttacgggactgtcagac tctgaagaggtccagatggctctgtttatgctatttctcctcatatacctaattactatg ctggggaatgtggggatgctattgataatccgcctggacctccagcttcacactcccatg tattttttccttactcacctgtcatttattgacctcagttactcaactgtcgtcacacct aaaaccttagcgaacttactgacttccaactatatttccttcacgggctgctttgcccag atgttctgttttgtcttcttgggtactgctgaatgttatcttctctcctcaatggcctat gatcgctatgcagcgatctgcagtcctctacactacacagttattatgcccaaaaggctc tgcctcgctctcatcactgggccttatgtgattggctttatggactcctttgtcaatgtg gtttccatgagcagattgcatttctgtgactcaaacataattcatcactttttctgtgac acttccccaattttagctctgtcctgcactgacacagacaacactgaaatgctgatattc attatcgctggttccaccctgatggtgtcccttatcacaatatctgcatcctatgtgtcc attctctctaccatcctgaaaattaattccacttcaggaaagcagaaagctttctctact tgcgtctctcatctcttgggagtcaccatcttctatggaactatgatttttacttactta aagccaagaaagtcttattccttgggaagagatcaagtggctcctgtgttttatactatt gtgattcccatgctgaatccactcatttatagtcttagaaacagagaagtgaaaaatgct ctcattagagtcatgcagagaagacaggactccaggtag >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_4|525_aa MGQHNLTVLTEFILMELTRRPELQIPLFGVFLVIYLITVVGNLTMIILTKLDSHLHTPMY FSIRHLAFVDLGNSTVICPKVLANFVVDRNTISYYACAAQLAFFLMFIISEFFILSAMAY DRYVAICNPLLYYVIMSQRLCHVLCTSYSTINPMIAGPEILEIQNKVSKRSFFLVIACKT GRGQKGRVRLYGETEDGFIWEEGYEFPNSDMAPENFTRVTEFILTGVSSCPELQIPLFLV FLVLYVLTMAGNLGIITLTSVDSRLQNPMYFFLRHLAIINLGNSTVIAPKMLMNFLVKKK TTSFYECATQLGGFLFFIVSEVMMLAVMAYDRYVAICNPLLYMVVVSRRLCLLLVSLTYL YGFSTAIVVSPCIFSVSYCSSNIINHFYCDIAPLLALSCSDTYIPETIVFISAATNLVFS MITVLVSYFNIVLSILRIRSPEGRKKAFSTCASHMIAVTVFYGTMLFMYLQPQTNHSLDT DKMASVFYTLVIPMLNPLIYSLRNNDVNVALKKFMENPCYSFKSM >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_4|1578_bp atgggccaacacaatctaacagtgctaactgaattcattctgatggaactcacaaggcgg cctgagctgcagattcccctttttggagtcttcctcgtcatctacctaatcacagtggtg ggcaacctaactatgatcattttgaccaaactggactcccacttacatacacctatgtac ttttctatcagacatttggcttttgttgatcttggtaattctactgtcatttgtcccaag gtgctggcaaattttgttgtggatcgaaatactatttcctattatgcatgtgctgcacag ctggcattcttccttatgttcattatcagtgaatttttcatcctgtcagccatggcctat gaccgctatgtggccatttgtaaccctctgctctattatgttattatgtctcagcgactg tgtcatgtactgtgtacctcctattctacaataaaccctatgatagcaggccctgagatt ttggaaattcaaaataaagtttccaaaaggagtttctttctagttattgcttgtaagaca ggaagaggccagaaaggaagagtgaggctctacggagaaacagaagatggcttcatctgg gaagaaggttatgaatttccaaactctgacatggctcctgaaaatttcaccagggtcact gagtttattctcacaggtgtctctagctgtccagagctccagattcccctcttcctggtc ttcctagtgctctatgtgctgaccatggcagggaacctgggcatcatcaccctcaccagt gttgactctcgacttcaaaaccccatgtactttttcctgagacatctagctatcatcaat cttggcaactctactgtcattgcccctaaaatgctgatgaactttttagtaaagaagaaa actacctcattctatgaatgtgccacccaactgggagggttcttgttctttattgtatcg gaggtaatgatgctggctgtgatggcctatgaccgctatgtggccatttgtaaccctctg ctctacatggtggtggtgtctcggcggctctgcctcctgctggtgtccctcacatacctc tatggcttttctacagctattgtggtttcaccttgtatattctctgtgtcttattgctct tctaatataatcaatcatttttactgtgatattgcacctctgttagcattatcttgctct gatacttacataccagaaacaatagtctttatatctgcagcaacaaatttggttttttcc atgattacagttctagtatcttatttcaatattgttttgtccattctaaggatacgttca ccagaaggaaggaaaaaagccttttccacctgcgcttcgcatatgatagcagtcacggtt ttctatgggacaatgctatttatgtatttgcagccccaaaccaaccactcactggatact gataagatggcttctgtgttttacacattggtgattcctatgctgaatcccttgatctac agcctgaggaataatgatgtaaatgttgccttaaagaaattcatggaaaatccatgttac tcctttaaatcaatgtaa >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_5|361_aa MADDNFTVVTEFILLGLTDHAELKAVLFVVFLVIYAITLLRNLGMILLIQITSKLHTPMY FLLSCLSFVDACYSSAIAPKMLVNLLVVKATISFSACMVQHLCFGVFITTEGFLLSVMAY DRYVAIVSPLLYTVAMSDRKCVELVTGSWIGGIVNTLIHTISLRRLSFCRLNAVSHFFCD IPSLLKLSCSDTSMNELLLLTFSGVIAMATFLTVIISYIFIAFASLRIHSASGRQQAFST CASHLTAVTIFYVFFICFLVSYMSSFETYMFMSSKADVSHYLTSDYRLEAEEAKHPEMPT GGSLHSRVTTVNSKISQGISKESIVITEDDSSMYVIAPPDVLVGKDMVEDSDIDDPDLVW V >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_5|1086_bp atggctgatgataattttacagttgtcactgagtttattcttttgggattgacagatcat gctgaactaaaagctgtgctttttgtggtgttcctggtgatttacgccattaccttgttg aggaatctgggcatgatcctcttaatccaaatcacctccaaactccacacacccatgtac tttttactcagctgtctttcatttgtggatgcctgctattcatctgcaattgcacccaaa atgctggtgaacctcctggttgtgaaggcaacaatttctttctctgcttgcatggtacag catttgtgtttcggagtgttcatcaccacagaaggcttcttactgtcagtgatggcctat gaccgctatgtggccattgtgagtcccttgctttacactgtagccatgtctgatagaaag tgtgtggagcttgtcacaggatcatggataggtggaatagttaacacattaatccacaca atcagcttgaggagactgtccttttgtaggctaaatgctgtcagccacttcttctgtgac attccttcactgctaaagctgtcatgttctgacacctccatgaatgagttgttgctgtta accttctccggagtcattgccatggccaccttcttgactgtgatcatttcctacatcttc attgcttttgctagcctaaggatccactcagcatcaggcagacagcaagccttctccacc tgtgcctctcacctgactgctgtgaccatattctatgtatttttcatatgtttcttggtc agttatatgtcttcctttgaaacgtatatgttcatgtcctcaaaggctgacgtatcacat tacctgacttcagactacagactggaagctgaagaagccaaacacccagaaatgccaaca gggggttcattgcacagtagggtgactacagttaacagtaagatttcacaaggtatttca aaagaaagcattgttatcacagaagatgacagctccatgtatgttattgcccctccagat gttctagtgggaaaagacatggttgaagacagtgatattgatgatcctgaccttgtgtgg gtctag >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_6|56_aa MISGESAIDFYRKFGFEIMEPKKNYYKTAKPADDHVLQKNLKLPSGQNADVEKTDN >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_6|171_bp atgatcagcggtgagtcggcaattgacttctacaggaagtttggctttgagattatggag cccaagaagaactactataaaaccgcaaagcctgcagatgatcatgtcctgcagaaaaac ctcaaattaccttctggtcagaatgcagatgtggaaaagacagacaactga >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_7|235_aa MLVNFLVTKKTISYYGCAAQLGGFLVFIVAEIFTLAAMAYDRYVAIWSPLLYAVVVSPKV CRLLVSLTYLQSLITALTVSSCVFSVSYCSSNIINHFYCDDVPLLALSCSDTYIPETAVF IFSGTNLLFSMIVVLISYFNIVITILRIRSSEGRQKAFSTCASHMIAVVVFYGTLLFMYL QPRSNHSLDTDKMASVFYTLVIPVLNPLIYSLRNKNVKDALKRFLDNPCRSLKLM >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_7|708_bp atgctggttaacttcctggttaccaagaaaaccatatcatactatggatgtgcagcccaa ctgggtggattcttggttttcattgtggctgagattttcacgctggctgcaatggcctat gaccgctatgtggctatttggagccctctgctctacgccgtagtggtgtctccaaaggtg tgtcgtctgctggtgtccctcacataccttcagagtcttatcacagcactgactgtctct tcctgtgtgttctctgtgtcatactgttcttccaacattatcaaccatttttactgtgat gatgtccctttgctagcattgtcctgttctgatacctacattccagaaacagcagtcttt atcttttcagggaccaacttgcttttctccatgatcgttgttctgatatcctacttcaac attgttattaccattttgaggatacgttcctcagaaggacgacaaaaagccttttccacc tgtgcttctcacatgatagctgtggttgtgttctatgggactctccttttcatgtatttg caaccaaggagtaatcattcattagatactgacaaaatggcttcggtcttctacaccctg gtgataccagtgctgaaccctctaatctacagcctcaggaacaagaacgtgaaggatgca ctaaagaggttcctagataacccatgccgatcactcaaactaatgtaa >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_8|68_aa MEQSWTENDFDELREEGFRRSNYSELKEEFRTHDKEVKNLEKKLDEWLTRITNAEKSLKD LMKLKTKA >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_8|207_bp atggaacaaagctggacagagaatgactttgatgagttgagagaagaaggcttcagacga tcaaactattcagagctaaaggaggaatttcgaacccatgacaaagaagttaaaaacctc gaaaaaaaattagatgaatggctaactagaataaccaatgcagagaagtccttaaaggac ctaatgaagctgaaaaccaaggcatga >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_9|231_aa MGDFNTPLSTLDRSTRQKVNKDIQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYS KIDHIVGSKALLSKCKITEIITNFLSDHSAIQLELRIKKLTQNCPTTWKLNNLLLNDYWV HNEMKAEIKMFFETNRNKDTTYQNLWDTFKAVCREKFIALNAHKRKQERSKIDTLTSQLK ELEKQEQTHSKASRRQEITKIRVELKEINPSKTSSKKSMNPGACFLKRSTK >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_9|696_bp atgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaac aaggatatccaggaattgaactcagctctgcaccaagcagacctaatagacatctacaga actctccaccccaaatcaacagaatatacattcttctcagcaccacaccacacctattcc aaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaataacagaaatt ataacaaactttctctctgaccacagtgcaatccaactagaactcaggattaagaaactc actcaaaactgcccaactacatggaaactgaacaacctgctcctgaatgactactgggta cataatgaaatgaaggcagaaataaagatgttctttgaaaccaacaggaacaaagacaca acataccagaatctctgggacacattcaaagcagtgtgtagagagaaatttatagcacta aatgcccataagagaaagcaggaaagatctaaaattgacaccctaacatcacaattaaaa gaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaag atcagagtagaactgaaggaaataaacccttcaaaaacctcttcaaaaaaatcaatgaat ccaggagcttgttttttgaaaagatcaacaaaatag >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_10|318_aa MKNVTEVTLFVLKGFTDNLELQTIFFFLFLAIYLFTLMGNLGLILVVIRDSQLHKPMYYF LSMLSSVDACYSSVITPNMLVDFTTKNKVISFLGCVAQVFLACSFGTTECFLLAAMAYDR YVAIYNPLLYSVSMSPRVYMPLINASYVAGILHATIHTVATFSLSFCGANEIRRVFCDIP PLLAISYSDTHTNQLLLFYFVGSIELVTILIVLISYGLILLAILKMYSAEGRRKVFSTCG AHLTGVSIYYGTILFMYVRPSSSYASDHDMIVSIFYTIVIPLLNPVIYSLRNKDVKDSMK KMFGKNQVINKVYFHTKK >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_10|957_bp atgaagaatgtcactgaagttaccttatttgtactgaagggcttcacagacaatcttgaa ctgcagactatcttcttcttcctgtttctagcaatctacctcttcactctcatgggaaat ttaggactgattttagtggtcattagggattcccagctccacaaacccatgtactatttt ctgagtatgttgtcttctgtggatgcctgctattcctcagttattaccccaaatatgtta gtagattttacgacaaagaataaagtcatttcattccttggatgtgtagcacaggtgttt cttgcttgtagttttggaaccacagaatgctttctcttggctgcaatggcttatgatcgc tatgtagccatctacaaccctctcctgtattcagtgagcatgtcacccagagtctacatg ccactcatcaatgcttcctatgttgctggcattttacatgctactatacatacagtggct acatttagcctatccttctgtggagccaatgaaattaggcgtgtcttttgtgatatccct cctctccttgctatttcttattctgacactcacacaaaccagcttctactcttctacttt gtgggctctatcgagctggtcactatcctgattgttctgatctcctatggtttgattctg ttggccattctgaagatgtattctgctgaagggaggagaaaagtcttctccacatgtgga gctcacctaactggagtgtcaatttattatgggacaatcctcttcatgtatgtgagacca agttccagctatgcttcggaccatgacatgatagtgtcaatattttacaccattgtgatt cccttgctgaatcccgtcatctacagtttgaggaacaaagatgtaaaagactcaatgaaa aaaatgtttgggaaaaatcaggttatcaataaagtatattttcatactaaaaaataa >gi568815587f:56076618_56277553|GENSCAN_predicted_peptide_11|58_aa MDEAGNRHSQQINTGTENQTLHVLTPATPYGLPLPSILPKAIYRFNAISVKMSTFSQN >gi568815587f:56076618_56277553|GENSCAN_predicted_CDS_11|177_bp atggatgaagccggaaaccgtcattctcagcaaattaacacaggaacagaaaaccaaaca ctgcatgttctcactccggctactccatatggactgccgttgccatcaatactgcccaaa gcaatatacagattcaatgcaatttctgtcaaaatgtcaactttttcacagaattag