GENSCAN 1.0 Date run: 3-Nov-116 Time: 17:41:42 Sequence gi568815592r:49860295_50064105 : 203811 bp : 34.78% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 27271 27352 82 0 1 120 44 63 0.000 3.39 1.02 Intr + 32676 32828 153 1 0 71 96 67 0.028 4.92 1.03 Term + 35736 35977 242 1 2 63 47 145 0.237 3.10 1.04 PlyA + 36033 36038 6 1.05 2.00 Prom + 36409 36448 40 -5.15 2.01 Init + 63077 63167 91 1 1 82 99 76 0.906 8.80 2.02 Term + 73294 73913 620 2 2 -2 37 430 0.877 22.51 2.03 PlyA + 76046 76051 6 1.05 3.03 PlyA - 78203 78198 6 1.05 3.02 Term - 85931 85807 125 0 2 88 43 83 0.058 1.37 3.01 Init - 96225 96168 58 0 1 65 111 16 0.027 3.12 3.00 Prom - 97533 97494 40 -4.35 4.04 PlyA - 98114 98109 6 1.05 4.03 Term - 100152 99998 155 1 2 53 48 144 0.725 4.00 4.02 Intr - 101813 101699 115 2 1 72 39 83 0.084 0.90 4.01 Init - 125556 125443 114 0 0 83 91 73 0.836 7.36 4.00 Prom - 135447 135408 40 -2.55 5.00 Prom + 169062 169101 40 -3.35 5.01 Sngl + 170038 170454 417 0 0 85 49 124 0.759 4.27 5.02 PlyA + 170976 170981 6 1.05 6.03 PlyA - 176730 176725 6 1.05 6.02 Term - 183507 183281 227 1 2 84 49 143 0.954 5.96 6.01 Init - 188315 188243 73 2 1 54 98 100 0.982 8.88 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init + 90310 90338 29 0 2 77 86 74 0.872 5.22 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815592r:49860295_50064105|GENSCAN_predicted_peptide_1|158_aa VMSGACVIRGSSIIWGYGSCRVISFISEPTHVRRNQKTYPGNMTKQGSSTPPRKITLVHQ QQTQTEKKSLIYLKNSSEVLEALARAIRREKEINGIQISKEEVKLSLFADDMIVYLENPE DSSRKLLELIKKKFSKVCRCKINVHEELQISSSSIHQQ >gi568815592r:49860295_50064105|GENSCAN_predicted_CDS_1|477_bp gtaatgtctggggcttgtgtcatccgaggaagcagcatcatctggggttacggatcctgc agggtcatttccttcatttctgagcctacccatgtgagaaggaaccagaaaacctatcct ggtaatatgacaaaacaaggctcttcaacacccccccgcaaaatcacactagttcaccag cagcagacccaaaccgagaagaaatccctgatttacctaaaaaatagttcagaagtactg gaagccctagccagagcaatcagaagagagaaagaaataaatggcatccaaatcagtaaa gaggaagtcaaactgtcactgtttgctgatgatatgattgtttatcttgaaaaccctgag gactcctccagaaagctcctagaactgataaaaaagaaattcagtaaagtttgcagatgc aagatcaatgtacacgaagagctacaaatcagtagctcttctatacaccagcaatga >gi568815592r:49860295_50064105|GENSCAN_predicted_peptide_2|236_aa MQQQGVEDRKLNQLKVTDFQSWLDKGIENTGALQPAAAPWDPFSGLAEDGAGSLGLREGV EGEAQVGTGAACSACRPARVPGGHGLGGPALAGAGWPCWPRAVRGLAPRPAAAEGAPRPR THREGLQLHSSAARPRTHQEDPNSRRAALRAVTLTAMVCSFTPEPARPRTHQKEETPNTS EHQKEQTPDTLPLRTVTLIARVRGFILEVSETKNPPIPDTVVLIAINLLPFSPPLH >gi568815592r:49860295_50064105|GENSCAN_predicted_CDS_2|711_bp atgcagcaacaaggtgtagaagacaggaagttgaatcaactcaaggttacagattttcag agttggctggacaagggtattgaaaatactggagcccttcagcccgctgctgcaccatgg gaccccttctctgggctggccgaggacggagccggctccctgggcttgcgggaaggtgtg gagggagaggcacaggtgggaaccggtgctgcatgcagcgcttgcaggccagctagagtt ccaggtgggcatgggcttggtggccccgcactagcaggggccggctggccctgctggccc cgggcagtgaggggcttagcacccaggccagcagctgcggagggtgcgccccgtccccgc actcaccgtgaaggtctgcagcttcactcctcagcggcgagaccacgaacccaccaggag gatcccaactccagacgtgccgccttaagagctgtgacactcaccgcgatggtctgcagt ttcactcctgagccagcgagaccacgaactcaccagaaggaagaaactccaaacacatcc gaacatcagaaggaacaaactccggacacgctgcctttaagaactgtaacactcatcgcc agggtccgcggcttcattcttgaagtcagtgagaccaagaacccaccaattccggacaca gtagtacttattgcaattaatcttctccctttttccccaccactgcactaa >gi568815592r:49860295_50064105|GENSCAN_predicted_peptide_3|60_aa MKNQYKRLTRNGQYIRRQPVKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANCYM >gi568815592r:49860295_50064105|GENSCAN_predicted_CDS_3|183_bp atgaagaaccagtataagagactaacgagaaatggccaatatattaggagacaaccagtg aaatgtgccgtgaaagacacctatagttgctttatcatgagaggcaaatgtcgacatgag tgtcatgattttgaaaaaccaattggtttctgcacaaaactaaatgccaactgttatatg tag >gi568815592r:49860295_50064105|GENSCAN_predicted_peptide_4|127_aa MDEAGNHHSQQTDTGTENQTLYVLIHKWELNNENTWTQGYAQQKCLSMCPKSQVQKYSKM GNNLNIHQQIRLKCRISTCTLVNADRCTKRYGRCKRDCLESEKQIDICSLPRKICCTEKL YEEDDMF >gi568815592r:49860295_50064105|GENSCAN_predicted_CDS_4|384_bp atggatgaagctggaaaccatcattctcagcaaactgacacaggaacagaaaaccaaaca ctgtatgttctcattcataagtgggagttgaacaatgagaacacatggacacagggatat gcccaacaaaaatgcctgagcatgtgccccaagagtcaagtacaaaagtattcaaaaatg ggaaacaacctgaatattcatcagcagataaggctaaaatgtcgtatatccacatgtacc ttggtgaatgctgatcgttgcaccaaacgttacggtcgttgtaaaagagactgtcttgag agtgaaaagcaaatagacatatgttccttaccaagaaaaatttgctgcactgagaaattg tatgaagaagatgatatgttttga >gi568815592r:49860295_50064105|GENSCAN_predicted_peptide_5|138_aa MGLQQAPSQGPLCAGELRLSSAMDAHPRALCHSERLCPQLTTRTGDSRASFPAGMGHEGP ARPACPPVPPRAPAWPSHRNIDTAHALLPGLGALFRLKEFWQPGILLDPPKHPERNPEGP EKGEAPSKSWCFRAAACS >gi568815592r:49860295_50064105|GENSCAN_predicted_CDS_5|417_bp atggggcttcagcaggcaccaagccagggacctttgtgtgcgggagagctccggttgagc tccgctatggatgcccatcccagggctctctgtcactctgagaggctctgtcctcagcta accacaagaacgggagatagcagagccagtttccccgcgggaatggggcacgaaggtcct gcaaggcccgcctgcccgccagtccctcccagggctcccgcctggccatcccacagaaat atagacactgcgcatgctctactgcccggcctgggtgctttgttccgactgaaggaattt tggcagcctggaatccttttggatcccccaaaacacccagaacgcaaccctgaaggtcca gagaagggagaagccccaagcaagtcctggtgtttcagggctgcagcctgcagctaa >gi568815592r:49860295_50064105|GENSCAN_predicted_peptide_6|99_aa MYSKTNTSSTIFEKARHGTEKISTARSEGHHITFSRWKSCTAIGGRCKNQCDDSEFRISY CARPTTHCCVTECDPTDPNNWIPKDSVGTQEWYPKDSRH >gi568815592r:49860295_50064105|GENSCAN_predicted_CDS_6|300_bp atgtactcaaagacaaatacatcttccacaatatttgaaaaggcccgacatgggacagag aaaatcagcacagccagaagtgaagggcaccatatcacctttagtaggtggaagtcatgt acagcgattggaggtcgatgtaaaaatcaatgtgatgatagtgaatttaggatttcatac tgtgcaagacctacaactcattgctgcgtgacagaatgtgaccctacggacccaaataat tggatcccaaaggactcagtagggactcaagaatggtaccctaaagactcacgtcattga