GENSCAN 1.0	Date run:  3-Nov-116	Time: 17:56:02

Sequence gi568815597f:20039428_20248398 : 208971 bp : 47.10% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +  13968  14007   40                              -2.56
 1.01 Init +  34596  34638   43  2  1   72   69    58 0.357   2.88
 1.02 Term +  37334  37449  116  0  2   86   33   108 0.424   3.83
 1.03 PlyA +  37492  37497    6                               1.05

 2.00 Prom +  43543  43582   40                              -3.96
 2.01 Init +  46640  46800  161  1  2   96   85   248 0.816  24.60
 2.02 Intr +  50362  50468  107  1  2   54   91   101 0.999   6.86
 2.03 Term +  51141  51265  125  1  2  117   47   124 0.999   9.75
 2.04 PlyA +  51712  51717    6                               1.05

 3.08 PlyA -  52234  52229    6                               1.05
 3.07 Term -  53863  53686  178  0  1   23   36   280 0.981  13.46
 3.06 Intr -  68276  68110  167  2  2   81  103    84 0.708   7.96
 3.05 Intr -  74183  74048  136  1  1   78   22    85 0.373   1.47
 3.04 Intr -  74832  74694  139  1  1   94  -17   202 0.554   9.82
 3.03 Intr -  76186  76080  107  0  2   94   68   127 0.995  11.16
 3.02 Intr -  77050  76906  145  2  1   77   53   150 0.988   9.74
 3.01 Init -  80071  80032   40  1  1   82  105    84 0.766   7.98
 3.00 Prom -  83210  83171   40                              -3.66

 4.00 Prom +  83793  83832   40                              -4.76
 4.01 Init +  86690  86703   14  1  2   72  115     8 0.145   1.52
 4.02 Intr + 100739 100791   53  2  2  114  101    89 0.816  11.35
 4.03 Intr + 104019 104163  145  1  1   82   82   231 0.495  21.24
 4.04 Intr + 105153 105262  110  0  2  120   73   193 0.999  20.93
 4.05 Intr + 108763 108929  167  2  2   94   26   274 0.979  21.48
 4.06 Intr + 110366 110550  185  1  2   98   11    82 0.032   0.09
 4.07 Intr + 116145 116427  283  0  1   88   49   162 0.067   9.72
 4.08 Intr + 117528 118209  682  2  1   44   77   346 0.546  20.26
 4.09 Intr + 118680 118949  270  1  0   39  116   122 0.276   7.61
 4.10 Term + 120203 120447  245  0  2  107   42    76 0.245   0.96
 4.11 PlyA + 121119 121124    6                               1.05

 5.04 PlyA - 123651 123646    6                               1.05
 5.03 Term - 124730 124564  167  0  2  110   50   148 0.857  11.28
 5.02 Intr - 133470 133367  104  2  2    5   59   177 0.694   6.32
 5.01 Init - 135767 135580  188  2  2   74   94   159 0.483  11.79
 5.00 Prom - 136436 136397   40                              -7.46

 6.00 Prom + 136654 136693   40                             -10.55
 6.01 Init + 137327 137405   79  1  1   70   50    76 0.422   3.22
 6.02 Intr + 139525 139583   59  2  2   54   86   103 0.351   5.30
 6.03 Intr + 142100 142291  192  1  0   15  121    65 0.408   2.19
 6.04 Intr + 142559 142651   93  1  0   69  113    64 0.983   7.16
 6.05 Intr + 143757 143820   64  2  1   52   94    94 0.920   4.69
 6.06 Term + 146605 146726  122  2  2   76   43    63 0.804  -0.76
 6.07 PlyA + 150959 150964    6                               1.05

 7.00 Prom + 150978 151017   40                              -8.56
 7.01 Sngl + 151135 151977  843  0  0   84   47   616 0.946  52.86
 7.02 PlyA + 153800 153805    6                               1.05

 8.03 PlyA - 155668 155663    6                               1.05
 8.02 Term - 164437 164306  132  1  0   85   47    63 0.575  -0.01
 8.01 Init - 164604 164551   54  0  0  125   94    23 0.647   6.04
 8.00 Prom - 182074 182035   40                              -0.86

 9.04 PlyA - 182560 182555    6                               1.05
 9.03 Term - 184838 184754   85  1  1   39   55    62 0.032  -4.87
 9.02 Intr - 187824 187713  112  1  1   54   64    90 0.128   2.64
 9.01 Init - 204425 204383   43  2  1   88  103    42 0.486   6.28

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 111647 111751  105  1  0  111   52    62 0.917   3.31
S.002 Init + 159556 159654   99  0  0   80   95    52 0.811   5.36


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_1|52_aa
MTVSAMKGKNRVTLGNARVDSISDEFYNIPETGKLPVERRIMEDFPEEEDLM

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_1|159_bp
atgacggtcagtgccatgaaggggaaaaacagggtgaccttgggaaatgccagagtggac
agcatatcagatgagttctataacattccagagacaggtaagctccctgtggaaagaagg
atcatggaagacttcccggaggaggaggacttgatgtag

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_2|130_aa
MGYLPGVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGTDWCCWAHD
HCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKRNLRSYNPQ
YQYFPNILCS

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_2|393_bp
atgggctatcttccaggtgtgcctgctgtgcaaggaggcttgctggacctaaaatcaatg
atcgagaaggtgacagggaagaacgccctgacaaactacggcttctacggctgttactgc
ggctggggcggccgaggaacccccaaggatggcaccgattggtgctgttgggcgcatgac
cactgctatgggcggctggaggagaagggctgcaacattcgcacacagtcctacaaatac
agattcgcgtggggcgtggtcacctgcgagcccgggcccttctgccatgtgaacctctgt
gcctgtgaccggaagctcgtctactgcctcaagagaaacctacggagctacaacccacag
taccaatactttcccaacatcctctgctcctag

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_3|303_aa
MELALLCGLVVMAGVIPIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDAT
DWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVAFCLK
RNLDTYQKRLRFYWRPHCRGQTPGQALKSLQVEAMPVLNSVASLVPKATPEPRRSSINPS
WVKPRQSRQEAIEVGSKCILLVGCLCWSPFQDPGLGWGERKPKLSLFPPQGFSPEMMQQL
SLALRLGDKSKIPSEEEEGEGEGRGRRGGGREEEEEEEEEEEEEEEEEEEEEYPYTSYLI
SPP

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_3|912_bp
atggaacttgcactgctgtgtgggctggtggtgatggctggtgtgattccaatccagggc
gggatcctgaacctgaacaagatggtcaagcaagtgactgggaaaatgcccatcctctcc
tactggccctacggctgtcactgcggactaggtggcagaggccaacccaaagatgccacg
gactggtgctgccagacccatgactgctgctatgaccacctgaagacccaggggtgcagc
atctacaaggactattacagatacaacttttcccaggggaacatccactgctctgacaag
ggaagctggtgtgagcagcagctgtgtgcctgtgacaaggaggtggccttctgcctgaag
cgcaacctggacacctaccagaagcgactgcgtttctactggcggccccactgccggggg
cagacccctgggcaagctctgaagtccctgcaggtggaggccatgcctgtcttaaactca
gttgcatccctggtgcccaaagcaacaccagaaccaagaaggagctccataaatccttct
tgggtgaagcctagacaaagccgccaggaggccattgaagtggggtcaaagtgcattctg
ctcgtgggctgcctctgctggagccccttccaggatccagggctaggctggggtgagagg
aagccaaagctgtccctgttccctcctcaaggattcagccctgagatgatgcagcagctg
tcactggctctgcgcctgggtgacaagagcaaaattccatctgaagaagaagaaggagaa
ggagaaggaagaggaagaagaggaggaggaagggaggaagaagaggaggaggaagaggag
gaagaagaggaggaggaagaagaagaagaagaagaatatccatacacctcctacctcatc
agcccaccttag

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_4|717_aa
MTGTWSSLGMKKFFTVAILAGSVLSTAHGSLLNLKAMVEAVTGRSAILSFVGYGCYCGLG
GRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTECDKQTC
MCDKNMVLCLMNQTYREEYRGFLNVYCQGPTPNCSIYEPPPEEVHLTFLLTCPSLNSGSA
ASTEPAPPARKPLKPPSARTQQPPASSPGSAPGAPLSLGRESREGKNNTPSYTGKPQAII
DLLQTIIQTHNPTWADCHQVLMYLFNTDERRRVLQAATKWLEEHVPADYQNPQEYVRIQL
PGTDPQWDPDERQYAKAKPPGTKDYRLIQDLHLVNQATVTLHPTVPNPYTLLWLLPAEDS
WFTYLGLKDAFFSIRLAPESQKLFAFQWEDPGSGVTTQYTWTQLPQGFKNSTTIFGEALA
RDLQKFPTRDLGCVLLQYVDDLLLGHLMAVGCAKGMDTLLWHLEDCGYKVSKKKAQICQQ
EVRYLGFTIQQGERSLGSERMQVICNLPEPKTKRQVREFLGAVGFCRLWIPNFAVLAKPL
YEVIKGVSESPVERNYVEVLDTVYSSRPDLQDHPWTSVDWELYMDRSSFVNPQGERCAGY
AVVTLDAVTEAKSLPQDTSAQKVKLIALIWALELSEGDRVWITDWNIASLQPRWRGPQTI
VLTTPTAIKVEGIPAWIHHSHVKPKASETWEVRPSLDNPCKMTLKKMTSPAPVTPGS

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_4|2154_bp
atgactggcacatggtctagcctgggtatgaagaagttcttcaccgtggccatccttgct
ggcagcgttctgtccacagctcacggcagcctgctcaacctgaaggccatggtggaggcc
gtcacagggaggagcgccatcctgtccttcgtgggctacggttgctactgtgggctgggg
ggccgtggccagcccaaggatgaggtggactggtgctgccacgcccacgactgctgctac
caggaactctttgaccaaggctgtcacccctatgtggaccactatgatcacaccatcgag
aacaacactgagatagtctgcagtgacctcaacaagacagagtgtgacaagcagacatgc
atgtgtgacaagaacatggttctgtgcctcatgaaccagacgtaccgagaggagtaccgt
ggcttcctcaatgtctactgccagggccccacgcccaactgcagcatctatgaaccgccc
cctgaggaggtgcaccttaccttcctccttacctgcccgagcctcaactcagggtcagca
gcctccacggagccagccccacctgcccgaaaaccactgaagccaccctccgcccggact
caacagccgccagcaagctcgcctggcagtgcccctggagcaccattgtcgctggggagg
gagagccgggaagggaagaacaataccccatcctataccggaaagcctcaagctataatt
gatttgctccaaactataatccagacccacaaccccacctgggctgattgccaccaggtg
ctcatgtacctctttaacacagatgaaaggaggagagtgctccaagcagcaactaagtgg
ctggaagaacatgttcctgctgattaccaaaacccccaagagtatgtgaggatccaatta
ccaggaacagacccccagtgggacccagatgaaagacagtatgcaaaggctaaaccgcca
gggaccaaggactacaggctgatacaggacttgcacttggtcaatcaagctacggtgact
ttacatccaacagtacctaacccatacacattgttgtggttgctgccagctgaggacagc
tggttcacctacctgggcctgaaggacgctttctttagcatcagactagcccctgagagc
cagaaactgtttgcctttcagtgggaggatccagggtcaggtgtcaccactcagtacact
tggacccagcttccccaagggttcaagaactccaccaccatcttcggggaggccctggct
cgagacctgcaaaagtttcccaccagagacctaggctgcgtgttgctccagtatgtcgat
gacctcctgctgggacacctcatggcagttgggtgtgccaagggaatggataccctgctc
tggcacctggaggactgtgggtataaggtatccaagaagaaagctcagatatgtcaacag
gaggtacgttacttgggatttactatccaacagggggagcgcagcctgggatcagaaaga
atgcaggtcatttgcaacctaccggagcctaagaccaaaaggcaggtgagagaattctta
ggagctgtggggttctgcaggttatggatcccaaactttgcagtactggccaaacctctg
tacgaagtcataaagggagtgtcagagagcccagtcgaacgtaactatgtagaggtgttg
gacacagtttattctagcaggcctgacctccaagaccatccttggacatcagtagactgg
gagctgtacatggacaggagcagcttcgtcaacccacaaggagagaggtgtgcaggatat
gcagtggtaaccctggatgctgtcactgaagccaaatcattgccccaggatacttcagcc
caaaaggtcaaactcattgctttaatttgggccttagagctaagtgaaggtgatcgggta
tggatcacggattggaacatagcctccttgcagccacggtggagaggaccccagaccatc
gtcttgaccactcccacagccataaaggtagaaggaatcccagcctggattcaccacagc
catgtaaaacctaaagcatctgagacctgggaggtgagaccaagcttggacaacccatgc
aagatgactttgaagaagatgacaagccctgctccagtcacacctggaagctga

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_5|152_aa
MLIATSFFLFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDD
TDRHSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQ
SVHCFKESLPTYEKNFKQFSSQPRCGRHKPWC

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_5|459_bp
atgctcattgcaacttccttcttcctttttttctcatcggtggtggcagcccccacccac
agcagtttctggcagtttcagaggagggtcaaacacatcacggggcgaagtgccttcttc
tcatattacggatatggctgctactgtgggcttggggataaagggatccccgtggatgac
actgacaggcacagcccctcatctccctctccctacgagaagctgaaggagttcagctgc
cagcctgtgttgaacagctaccagttccacatcgtcaatggcgcagtggtttgtggatgc
acccttggtcctggtgccagctgccactgcaggctgaaggcctgtgagtgtgacaagcaa
tccgtgcactgcttcaaagagagcctgcccacctatgagaaaaacttcaagcagttctcc
agccagcccaggtgtggcagacataagccctggtgctag

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_6|202_aa
MDLDKPPLNESSKRVYQSPVDPKLFPRLGYQLLLTLSLTENHSLLQLSCFRAYPKHHREG
KTQNSPSSEAGITTLLDSCFRCSSNKLLSFISQAQQPDRNGVRAASLNRKRGGDNDSGPP
QNASKIPQAPEGENTWSTVAKPHNNPVLIITILEMRKLTSSEGRFRSRRKHVAPHPAALP
GRPGLFTSRTEPGRRRRMERNG

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_6|609_bp
atggatctggacaaacctccactcaacgaatccagcaaaagagtctatcagtctccagta
gaccccaaactgtttcccaggctggggtaccagctgctgctgacgctgtccctcactgag
aaccactctctgctgcagctctcctgcttccgtgcctatccaaaacaccaccgagaaggc
aaaacccaaaacagcccaagcagcgaagcaggtatcacaacactcttagactcttgtttt
agatgcagttctaacaagctgctcagcttcatttctcaggcccagcagccggacaggaat
ggagtcagagcagcttctcttaataggaagagaggtggagacaatgattctggcccccca
cagaatgccagcaagattccacaagctcctgaaggtgaaaatacttggtcaacagtagcc
aagccgcacaacaatcctgtgcttatcatcaccattctagagatgcggaaactgacatcc
agcgaaggccggttccggtcacgccggaagcacgtggccccccaccctgcggcgttgccc
gggagaccagggttgtttaccagcaggacagagcccgggcgcaggcggcggatggagcgg
aacggctag

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_7|280_aa
MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_7|843_bp
atggccacagaagcccctgtgaatatagcaccacctgagtgtagcactgttgtcagcaca
gcagttgacagcctcatttggcagccaaactcactaaatatgcacatgataaggcccaag
tccgccaagggacggacaagaccgagtctgcagaaatcccagggcgtggaggtgtgcgct
catcatataccatctccgcctccagccattccctatgagttgccaagcagccaaaaacca
ggagcctgtgcacccaaatctccaaaccagggagcttctgatgagatccctgagctgcag
cagcaagtacccactggggcttcctcttctctcaataagtatccagtccttccttccatc
aacagaaagaacctggaggaggaggctgtggaaaccgttgccaaaaaggccagctcactg
caactgagcagtatccgggctctttaccaagacgagacgggcaccatgaagacaagtgaa
gaagattccagagctcgagcttgtgccgtggagaggaaattcatcgtccgaaccaagaaa
cagggctcttccagggctggaaatctggaggaaccatcggaccaagaaccaaggttgctg
cttgctgttagatcaccaacaggccaaaggtttgtacgccatttccggccaacagatgat
ttgcaaaccattgttgctgtggccgaacagaaaaacaaaacctcctaccgacactgcagc
attgaaacaatggaggtgcccaggaggcgattttctgacctcaccaaatctctgcaagag
tgcagaatcccccacaagtctgtgctgggcatctcactggaagatggggaagggtggccc
tga

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_8|61_aa
MAKLLFLSESHFLLCRMELEIPPRFHRRNGTPGGHIGSSLGTFTVWTVQLRHRKNEALGK
T

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_8|186_bp
atggccaagttgctcttcctctctgagtcccatttcctcctctgtagaatggagctagaa
attccccccaggttccaccgaagaaacggcaccccaggtggccacataggaagttctctg
ggcactttcactgtctggacagtgcagcttcggcacagaaagaatgaggccttgggcaaa
acatag

>gi568815597f:20039428_20248398|GENSCAN_predicted_peptide_9|79_aa
MAYGQQIERDGKISGAIVKADAEKARGGREVGNCSLKFYDKKQGKETLDKSWFHHHTVCE
GYVGISRTQGPGDRNQTTD

>gi568815597f:20039428_20248398|GENSCAN_predicted_CDS_9|240_bp
atggcttatggtcagcagattgagagggatggtaaaatctcaggtgctattgtcaaggcc
gatgcagagaaagcaagaggaggcagagaggtgggtaactgctctttgaagttctatgac
aagaaacagggtaaagagactctggacaagtcctggtttcatcatcacacagtgtgtgaa
ggttatgttggaatcagtaggacacaaggccctggtgacaggaaccagaccacggactga