Result of FASTA (omim) for pF1KE0269
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0269, 433 aa
  1>>>pF1KE0269 433 - 433 aa - 433 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4358+/-0.000345; mu= 14.1098+/- 0.022
 mean_var=120.4900+/-24.317, 0's: 0 Z-trim(118.9): 42  B-trim: 1181 in 2/53
 Lambda= 0.116842
 statistics sampled from 32254 (32296) to 32254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.379), width:  16
 Scan time:  9.420

The best scores are:                                      opt bits E(85289)
NP_085145 (OMIM: 607255) apolipoprotein L5 [Homo s ( 433) 2902 500.0  5e-141
XP_006724384 (OMIM: 607255) PREDICTED: apolipoprot ( 417) 2422 419.0 1.1e-116
XP_016884434 (OMIM: 607255) PREDICTED: apolipoprot ( 361) 2380 411.9 1.3e-114
NP_085144 (OMIM: 607256) apolipoprotein L6 [Homo s ( 343)  626 116.2 1.3e-25
XP_011528694 (OMIM: 607256) PREDICTED: apolipoprot ( 343)  626 116.2 1.3e-25
XP_011528379 (OMIM: 181500,607252) PREDICTED: apol ( 337)  460 88.2 3.4e-17
XP_011528380 (OMIM: 181500,607252) PREDICTED: apol ( 337)  460 88.2 3.4e-17
NP_112092 (OMIM: 181500,607252) apolipoprotein L2  ( 337)  460 88.2 3.4e-17
NP_663612 (OMIM: 181500,607252) apolipoprotein L2  ( 337)  460 88.2 3.4e-17
XP_011528377 (OMIM: 181500,607252) PREDICTED: apol ( 337)  460 88.2 3.4e-17
XP_011528378 (OMIM: 181500,607252) PREDICTED: apol ( 337)  460 88.2 3.4e-17
XP_011528376 (OMIM: 181500,607252) PREDICTED: apol ( 337)  460 88.2 3.4e-17
XP_016884213 (OMIM: 181500,607252) PREDICTED: apol ( 449)  460 88.3 4.2e-17
NP_055164 (OMIM: 607253) apolipoprotein L3 isoform ( 331)  447 86.0 1.5e-16
XP_006724388 (OMIM: 607253) PREDICTED: apolipoprot ( 331)  447 86.0 1.5e-16
NP_663614 (OMIM: 607253) apolipoprotein L3 isoform ( 331)  447 86.0 1.5e-16
XP_006724387 (OMIM: 607253) PREDICTED: apolipoprot ( 331)  447 86.0 1.5e-16
NP_085147 (OMIM: 607253) apolipoprotein L3 isoform ( 331)  447 86.0 1.5e-16
XP_016884438 (OMIM: 607253) PREDICTED: apolipoprot ( 332)  447 86.0 1.5e-16
XP_016884436 (OMIM: 607253) PREDICTED: apolipoprot ( 332)  447 86.0 1.5e-16
XP_016884440 (OMIM: 607253) PREDICTED: apolipoprot ( 332)  447 86.0 1.5e-16
XP_016884435 (OMIM: 607253) PREDICTED: apolipoprot ( 332)  447 86.0 1.5e-16
XP_016884439 (OMIM: 607253) PREDICTED: apolipoprot ( 332)  447 86.0 1.5e-16
XP_016884437 (OMIM: 607253) PREDICTED: apolipoprot ( 332)  447 86.0 1.5e-16
NP_663615 (OMIM: 607253) apolipoprotein L3 isoform ( 402)  447 86.1 1.8e-16
NP_001130013 (OMIM: 603743,612551) apolipoprotein  ( 380)  376 74.1 6.8e-13
XP_005261853 (OMIM: 603743,612551) PREDICTED: apol ( 380)  376 74.1 6.8e-13
NP_003652 (OMIM: 603743,612551) apolipoprotein L1  ( 398)  376 74.1 7.1e-13
NP_001130012 (OMIM: 603743,612551) apolipoprotein  ( 398)  376 74.1 7.1e-13
NP_663318 (OMIM: 603743,612551) apolipoprotein L1  ( 414)  376 74.2 7.3e-13
XP_011528780 (OMIM: 603743,612551) PREDICTED: apol ( 277)  372 73.3 8.6e-13
NP_085146 (OMIM: 181500,607254) apolipoprotein L4  ( 348)  359 71.2 4.7e-12
NP_663693 (OMIM: 181500,607254) apolipoprotein L4  ( 351)  359 71.2 4.7e-12
NP_663617 (OMIM: 607253) apolipoprotein L3 isoform ( 202)  324 65.1 1.8e-10
NP_663616 (OMIM: 607253) apolipoprotein L3 isoform ( 202)  324 65.1 1.8e-10
XP_016884441 (OMIM: 607253) PREDICTED: apolipoprot ( 202)  324 65.1 1.8e-10


>>NP_085145 (OMIM: 607255) apolipoprotein L5 [Homo sapie  (433 aa)
 initn: 2902 init1: 2902 opt: 2902  Z-score: 2652.9  bits: 500.0 E(85289): 5e-141
Smith-Waterman score: 2902; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)

               10        20        30        40        50        60
pF1KE0 MPCGKQGNLQVPGSKVLPGLGEGCKEMWLRKVIYGGEVWGKSPEPEFPSLVNLCQSWKIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 MPCGKQGNLQVPGSKVLPGLGEGCKEMWLRKVIYGGEVWGKSPEPEFPSLVNLCQSWKIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLFLSYFPLHKFELEQNIKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 NLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLFLSYFPLHKFELEQNIKEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVTAGGSLMLSATGTGLGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 NTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVTAGGSLMLSATGTGLGAAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AITNIVTNVLENRSNSAARDKASRLGPLTTSHEAFGGINWSEIEAAGFCVNKCVKAIQGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 AITNIVTNVLENRSNSAARDKASRLGPLTTSHEAFGGINWSEIEAAGFCVNKCVKAIQGI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEGTTLAMTNGAWVMGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 KDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEGTTLAMTNGAWVMGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 FLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLEQELDRLTQHHRHLPQKASQTCSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 FLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLEQELDRLTQHHRHLPQKASQTCSS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 SRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVALRTPKRTVSAPRMLGHQPAPPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 SRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVALRTPKRTVSAPRMLGHQPAPPAP
              370       380       390       400       410       420

              430   
pF1KE0 ARKGRQAPGRHRQ
       :::::::::::::
NP_085 ARKGRQAPGRHRQ
              430   

>>XP_006724384 (OMIM: 607255) PREDICTED: apolipoprotein   (417 aa)
 initn: 2412 init1: 2412 opt: 2422  Z-score: 2215.8  bits: 419.0 E(85289): 1.1e-116
Smith-Waterman score: 2422; 96.6% identity (97.7% similar) in 384 aa overlap (50-433:35-417)

      20        30        40        50        60        70         
pF1KE0 LGEGCKEMWLRKVIYGGEVWGKSPEPEFPSLVNLCQSWKINNLMSTVHSDEAGMLSYFLF
                                     ::.: :.:.        .::::::::::::
XP_006 PTKIHPDSQLSRSTVMSFRAEMTQEEMSLILVHL-QAWEKVVKKCGFESDEAGMLSYFLF
           10        20        30         40        50        60   

      80        90       100       110       120       130         
pF1KE0 EELMRCDKDSMPDGNLSEEEKLFLSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EELMRCDKDSMPDGNLSEEEKLFLSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSL
            70        80        90       100       110       120   

     140       150       160       170       180       190         
pF1KE0 VASSSGAVSGVMNILGLALAPVTAGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VASSSGAVSGVMNILGLALAPVTAGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAAR
           130       140       150       160       170       180   

     200       210       220       230       240       250         
pF1KE0 DKASRLGPLTTSHEAFGGINWSEIEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DKASRLGPLTTSHEAFGGINWSEIEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMV
           190       200       210       220       230       240   

     260       270       280       290       300       310         
pF1KE0 KNFVAKRHIPFWTARGVQRAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KNFVAKRHIPFWTARGVQRAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLED
           250       260       270       280       290       300   

     320       330       340       350       360       370         
pF1KE0 GARTETAEELRALAKKLEQELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GARTETAEELRALAKKLEQELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRS
           310       320       330       340       350       360   

     380       390       400       410       420       430   
pF1KE0 PLPWPVVEHQPRLGPGVALRTPKRTVSAPRMLGHQPAPPAPARKGRQAPGRHRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PLPWPVVEHQPRLGPGVALRTPKRTVSAPRMLGHQPAPPAPARKGRQAPGRHRQ
           370       380       390       400       410       

>>XP_016884434 (OMIM: 607255) PREDICTED: apolipoprotein   (361 aa)
 initn: 2380 init1: 2380 opt: 2380  Z-score: 2178.4  bits: 411.9 E(85289): 1.3e-114
Smith-Waterman score: 2380; 100.0% identity (100.0% similar) in 361 aa overlap (73-433:1-361)

             50        60        70        80        90       100  
pF1KE0 PEPEFPSLVNLCQSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLF
                                     ::::::::::::::::::::::::::::::
XP_016                               MLSYFLFEELMRCDKDSMPDGNLSEEEKLF
                                             10        20        30

            110       120       130       140       150       160  
pF1KE0 LSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVT
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KE0 AGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTSHEAFGGINWSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTSHEAFGGINWSE
              100       110       120       130       140       150

            230       240       250       260       270       280  
pF1KE0 IEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEG
              160       170       180       190       200       210

            290       300       310       320       330       340  
pF1KE0 TTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLEQELDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLEQELDR
              220       230       240       250       260       270

            350       360       370       380       390       400  
pF1KE0 LTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVALRTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVALRTPK
              280       290       300       310       320       330

            410       420       430   
pF1KE0 RTVSAPRMLGHQPAPPAPARKGRQAPGRHRQ
       :::::::::::::::::::::::::::::::
XP_016 RTVSAPRMLGHQPAPPAPARKGRQAPGRHRQ
              340       350       360 

>>NP_085144 (OMIM: 607256) apolipoprotein L6 [Homo sapie  (343 aa)
 initn: 621 init1: 385 opt: 626  Z-score: 580.8  bits: 116.2 E(85289): 1.3e-25
Smith-Waterman score: 626; 39.5% identity (72.2% similar) in 281 aa overlap (85-363:25-302)

           60        70        80        90       100       110    
pF1KE0 QSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLFLSYFPLHKFELE
                                     :.   . ::.:: :::.::  ::  : .:.
NP_085       MDNQAERESEAGVGLQRDEDDAPLCEDVELQDGDLSPEEKIFLREFPRLKEDLK
                     10        20        30        40        50    

          120       130       140       150       160       170    
pF1KE0 QNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVTAGGSLMLSATGT
        :: .: .:::..: ::. .::...::.:....::::..:::::::.:.::::.::..: 
NP_085 GNIDKLRALADDIDKTHKKFTKANMVATSTAVISGVMSLLGLALAPATGGGSLLLSTAGQ
           60        70        80        90       100       110    

          180       190       200       210       220        230   
pF1KE0 GLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTSHEAFGGINWSE-IEAAGFCVNKC
       ::..::..:.::...::  .:. :. .:  . :   ...     . .. . :::  . . 
NP_085 GLATAAGVTSIVSGTLERSKNKEAQARAEDILPTYDQEDREDEEEKADYVTAAGKIIYNL
          120       130       140       150       160       170    

            240       250       260       270       280       290  
pF1KE0 VKAIQ-GIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEGTTLAMTNGAW
        .... . :...:.   ..:  .   .: ...  ..   .   ::.:: :::::::..: 
NP_085 RNTLKYAKKNVRAFWKLRANPRLANATKRLLTTGQVSSRSRVQVQKAFAGTTLAMTKNAR
          180       190       200       210       220       230    

            300       310       320       330       340       350  
pF1KE0 VMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLEQELDRLTQHHRHLPQ
       :.:.. ..: :  :.... . ::::..::::. :::::: : .::..: .::: .. : :
NP_085 VLGGVMSAFSLGYDLATLSKEWKHLKEGARTKFAEELRAKALELERKLTELTQLYKSLQQ
          240       250       260       270       280       290    

            360       370       380       390       400       410  
pF1KE0 KASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVALRTPKRTVSAPRMLG
       :.    : .::                                                 
NP_085 KVR---SRARGVGKDLTGTCETEAYWKELREHVWMWLWLCVCLCVCVYVQFT        
             300       310       320       330       340           

>>XP_011528694 (OMIM: 607256) PREDICTED: apolipoprotein   (343 aa)
 initn: 621 init1: 385 opt: 626  Z-score: 580.8  bits: 116.2 E(85289): 1.3e-25
Smith-Waterman score: 626; 39.5% identity (72.2% similar) in 281 aa overlap (85-363:25-302)

           60        70        80        90       100       110    
pF1KE0 QSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLFLSYFPLHKFELE
                                     :.   . ::.:: :::.::  ::  : .:.
XP_011       MDNQAERESEAGVGLQRDEDDAPLCEDVELQDGDLSPEEKIFLREFPRLKEDLK
                     10        20        30        40        50    

          120       130       140       150       160       170    
pF1KE0 QNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVTAGGSLMLSATGT
        :: .: .:::..: ::. .::...::.:....::::..:::::::.:.::::.::..: 
XP_011 GNIDKLRALADDIDKTHKKFTKANMVATSTAVISGVMSLLGLALAPATGGGSLLLSTAGQ
           60        70        80        90       100       110    

          180       190       200       210       220        230   
pF1KE0 GLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTSHEAFGGINWSE-IEAAGFCVNKC
       ::..::..:.::...::  .:. :. .:  . :   ...     . .. . :::  . . 
XP_011 GLATAAGVTSIVSGTLERSKNKEAQARAEDILPTYDQEDREDEEEKADYVTAAGKIIYNL
          120       130       140       150       160       170    

            240       250       260       270       280       290  
pF1KE0 VKAIQ-GIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQRAFEGTTLAMTNGAW
        .... . :...:.   ..:  .   .: ...  ..   .   ::.:: :::::::..: 
XP_011 RNTLKYAKKNVRAFWKLRANPRLANATKRLLTTGQVSSRSRVQVQKAFAGTTLAMTKNAR
          180       190       200       210       220       230    

            300       310       320       330       340       350  
pF1KE0 VMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLEQELDRLTQHHRHLPQ
       :.:.. ..: :  :.... . ::::..::::. :::::: : .::..: .::: .. : :
XP_011 VLGGVMSAFSLGYDLATLSKEWKHLKEGARTKFAEELRAKALELERKLTELTQLYKSLQQ
          240       250       260       270       280       290    

            360       370       380       390       400       410  
pF1KE0 KASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVALRTPKRTVSAPRMLG
       :.    : .::                                                 
XP_011 KVR---SRARGVGKDLTGTCETEAYWKELREHVWMWLWLCVCLCVCVYVQFT        
             300       310       320       330       340           

>>XP_011528379 (OMIM: 181500,607252) PREDICTED: apolipop  (337 aa)
 initn: 438 init1: 266 opt: 460  Z-score: 429.7  bits: 88.2 E(85289): 3.4e-17
Smith-Waterman score: 460; 33.9% identity (66.1% similar) in 289 aa overlap (73-356:59-337)

             50        60        70        80        90       100  
pF1KE0 PEPEFPSLVNLCQSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLF
                                     . :......  : :::.       .... :
XP_011 LTDDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQ-------QHRQWF
       30        40        50        60        70               80 

            110       120       130       140       150       160  
pF1KE0 LSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVT
       :. ::  : :::..:..: .::..:. .:.  : ...:..: :..::....:::.::: :
XP_011 LKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFT
              90       100       110       120       130       140 

            170       180       190       200       210            
pF1KE0 AGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTS----HEAFGGI
        : :..:  :: :::::::...:. .:.:  ..  :: .:  :    :.     . : : 
XP_011 EGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGG
             150       160       170       180       190       200 

      220       230       240        250       260       270       
pF1KE0 NWSEIEAAGFCVNKCVKAIQGI-KDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQ
       :  .. .    :..  .. ::: ....: . :..:  . :..    .  .:    .. :.
XP_011 NTPNVLTL---VDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVE
                210       220       230       240       250        

       280       290       300       310       320       330       
pF1KE0 RAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLE
       :. :: . ::. :. ..::: .:.::. :. :.    ::: .::..:.::::.  :..::
XP_011 RVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELE
      260       270       280       290       300       310        

       340       350       360       370       380       390       
pF1KE0 QELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVA
        .:. ::. :. :    .:                                         
XP_011 GKLNFLTKIHEMLQPGQDQ                                         
      320       330                                                

>>XP_011528380 (OMIM: 181500,607252) PREDICTED: apolipop  (337 aa)
 initn: 438 init1: 266 opt: 460  Z-score: 429.7  bits: 88.2 E(85289): 3.4e-17
Smith-Waterman score: 460; 33.9% identity (66.1% similar) in 289 aa overlap (73-356:59-337)

             50        60        70        80        90       100  
pF1KE0 PEPEFPSLVNLCQSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLF
                                     . :......  : :::.       .... :
XP_011 LTDDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQ-------QHRQWF
       30        40        50        60        70               80 

            110       120       130       140       150       160  
pF1KE0 LSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVT
       :. ::  : :::..:..: .::..:. .:.  : ...:..: :..::....:::.::: :
XP_011 LKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFT
              90       100       110       120       130       140 

            170       180       190       200       210            
pF1KE0 AGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTS----HEAFGGI
        : :..:  :: :::::::...:. .:.:  ..  :: .:  :    :.     . : : 
XP_011 EGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGG
             150       160       170       180       190       200 

      220       230       240        250       260       270       
pF1KE0 NWSEIEAAGFCVNKCVKAIQGI-KDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQ
       :  .. .    :..  .. ::: ....: . :..:  . :..    .  .:    .. :.
XP_011 NTPNVLTL---VDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVE
                210       220       230       240       250        

       280       290       300       310       320       330       
pF1KE0 RAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLE
       :. :: . ::. :. ..::: .:.::. :. :.    ::: .::..:.::::.  :..::
XP_011 RVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELE
      260       270       280       290       300       310        

       340       350       360       370       380       390       
pF1KE0 QELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVA
        .:. ::. :. :    .:                                         
XP_011 GKLNFLTKIHEMLQPGQDQ                                         
      320       330                                                

>>NP_112092 (OMIM: 181500,607252) apolipoprotein L2 [Hom  (337 aa)
 initn: 438 init1: 266 opt: 460  Z-score: 429.7  bits: 88.2 E(85289): 3.4e-17
Smith-Waterman score: 460; 33.9% identity (66.1% similar) in 289 aa overlap (73-356:59-337)

             50        60        70        80        90       100  
pF1KE0 PEPEFPSLVNLCQSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLF
                                     . :......  : :::.       .... :
NP_112 LTDDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQ-------QHRQWF
       30        40        50        60        70               80 

            110       120       130       140       150       160  
pF1KE0 LSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVT
       :. ::  : :::..:..: .::..:. .:.  : ...:..: :..::....:::.::: :
NP_112 LKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFT
              90       100       110       120       130       140 

            170       180       190       200       210            
pF1KE0 AGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTS----HEAFGGI
        : :..:  :: :::::::...:. .:.:  ..  :: .:  :    :.     . : : 
NP_112 EGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGG
             150       160       170       180       190       200 

      220       230       240        250       260       270       
pF1KE0 NWSEIEAAGFCVNKCVKAIQGI-KDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQ
       :  .. .    :..  .. ::: ....: . :..:  . :..    .  .:    .. :.
NP_112 NTPNVLTL---VDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVE
                210       220       230       240       250        

       280       290       300       310       320       330       
pF1KE0 RAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLE
       :. :: . ::. :. ..::: .:.::. :. :.    ::: .::..:.::::.  :..::
NP_112 RVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELE
      260       270       280       290       300       310        

       340       350       360       370       380       390       
pF1KE0 QELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVA
        .:. ::. :. :    .:                                         
NP_112 GKLNFLTKIHEMLQPGQDQ                                         
      320       330                                                

>>NP_663612 (OMIM: 181500,607252) apolipoprotein L2 [Hom  (337 aa)
 initn: 438 init1: 266 opt: 460  Z-score: 429.7  bits: 88.2 E(85289): 3.4e-17
Smith-Waterman score: 460; 33.9% identity (66.1% similar) in 289 aa overlap (73-356:59-337)

             50        60        70        80        90       100  
pF1KE0 PEPEFPSLVNLCQSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLF
                                     . :......  : :::.       .... :
NP_663 LTDDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQ-------QHRQWF
       30        40        50        60        70               80 

            110       120       130       140       150       160  
pF1KE0 LSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVT
       :. ::  : :::..:..: .::..:. .:.  : ...:..: :..::....:::.::: :
NP_663 LKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFT
              90       100       110       120       130       140 

            170       180       190       200       210            
pF1KE0 AGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTS----HEAFGGI
        : :..:  :: :::::::...:. .:.:  ..  :: .:  :    :.     . : : 
NP_663 EGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGG
             150       160       170       180       190       200 

      220       230       240        250       260       270       
pF1KE0 NWSEIEAAGFCVNKCVKAIQGI-KDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQ
       :  .. .    :..  .. ::: ....: . :..:  . :..    .  .:    .. :.
NP_663 NTPNVLTL---VDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVE
                210       220       230       240       250        

       280       290       300       310       320       330       
pF1KE0 RAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLE
       :. :: . ::. :. ..::: .:.::. :. :.    ::: .::..:.::::.  :..::
NP_663 RVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELE
      260       270       280       290       300       310        

       340       350       360       370       380       390       
pF1KE0 QELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVA
        .:. ::. :. :    .:                                         
NP_663 GKLNFLTKIHEMLQPGQDQ                                         
      320       330                                                

>>XP_011528377 (OMIM: 181500,607252) PREDICTED: apolipop  (337 aa)
 initn: 438 init1: 266 opt: 460  Z-score: 429.7  bits: 88.2 E(85289): 3.4e-17
Smith-Waterman score: 460; 33.9% identity (66.1% similar) in 289 aa overlap (73-356:59-337)

             50        60        70        80        90       100  
pF1KE0 PEPEFPSLVNLCQSWKINNLMSTVHSDEAGMLSYFLFEELMRCDKDSMPDGNLSEEEKLF
                                     . :......  : :::.       .... :
XP_011 LTDDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQ-------QHRQWF
       30        40        50        60        70               80 

            110       120       130       140       150       160  
pF1KE0 LSYFPLHKFELEQNIKELNTLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVT
       :. ::  : :::..:..: .::..:. .:.  : ...:..: :..::....:::.::: :
XP_011 LKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFT
              90       100       110       120       130       140 

            170       180       190       200       210            
pF1KE0 AGGSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTS----HEAFGGI
        : :..:  :: :::::::...:. .:.:  ..  :: .:  :    :.     . : : 
XP_011 EGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGG
             150       160       170       180       190       200 

      220       230       240        250       260       270       
pF1KE0 NWSEIEAAGFCVNKCVKAIQGI-KDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARGVQ
       :  .. .    :..  .. ::: ....: . :..:  . :..    .  .:    .. :.
XP_011 NTPNVLTL---VDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVE
                210       220       230       240       250        

       280       290       300       310       320       330       
pF1KE0 RAFEGTTLAMTNGAWVMGAAGAGFLLMKDMSSFLQSWKHLEDGARTETAEELRALAKKLE
       :. :: . ::. :. ..::: .:.::. :. :.    ::: .::..:.::::.  :..::
XP_011 RVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELE
      260       270       280       290       300       310        

       340       350       360       370       380       390       
pF1KE0 QELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSPLPWPVVEHQPRLGPGVA
        .:. ::. :. :    .:                                         
XP_011 GKLNFLTKIHEMLQPGQDQ                                         
      320       330                                                




433 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:12:36 2016 done: Thu Nov  3 18:12:37 2016
 Total Scan time:  9.420 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com