Result of FASTA (ccds) for pF1KE0268
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0268, 220 aa
  1>>>pF1KE0268 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1112+/-0.000716; mu= 13.2333+/- 0.044
 mean_var=133.5771+/-25.758, 0's: 0 Z-trim(114.9): 75  B-trim: 0 in 0/53
 Lambda= 0.110971
 statistics sampled from 15336 (15416) to 15336 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.474), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS8170.1 CABP2 gene_id:51475|Hs108|chr11         ( 220) 1500 250.2 7.5e-67
CCDS9205.1 CABP1 gene_id:9478|Hs108|chr12          ( 227)  893 153.1 1.4e-37
CCDS31913.1 CABP1 gene_id:9478|Hs108|chr12         ( 370)  827 142.7 2.9e-34
CCDS9204.1 CABP1 gene_id:9478|Hs108|chr12          ( 167)  794 137.1 6.6e-33
CCDS12709.1 CABP5 gene_id:56344|Hs108|chr19        ( 173)  767 132.8 1.3e-31
CCDS8166.1 CABP4 gene_id:57010|Hs108|chr11         ( 275)  722 125.8 2.7e-29
CCDS73333.1 CABP4 gene_id:57010|Hs108|chr11        ( 170)  703 122.5 1.6e-28
CCDS1832.1 CALM2 gene_id:805|Hs108|chr2            ( 149)  403 74.4 4.2e-14
CCDS33061.1 CALM3 gene_id:808|Hs108|chr19          ( 149)  403 74.4 4.2e-14
CCDS9892.1 CALM1 gene_id:801|Hs108|chr14           ( 149)  403 74.4 4.2e-14
CCDS7069.1 CALML3 gene_id:810|Hs108|chr10          ( 149)  391 72.5 1.6e-13


>>CCDS8170.1 CABP2 gene_id:51475|Hs108|chr11              (220 aa)
 initn: 1500 init1: 1500 opt: 1500  Z-score: 1313.7  bits: 250.2 E(32554): 7.5e-67
Smith-Waterman score: 1500; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE0 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDPAPGVQGYSVLNSLVGPACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDPAPGVQGYSVLNSLVGPACI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 EISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGRISVGELRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGRISVGELRAA
              130       140       150       160       170       180

              190       200       210       220
pF1KE0 LKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
       ::::::::::::::::::::::::::::::::::::::::
CCDS81 LKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
              190       200       210       220

>>CCDS9205.1 CABP1 gene_id:9478|Hs108|chr12               (227 aa)
 initn: 585 init1: 493 opt: 893  Z-score: 788.3  bits: 153.1 E(32554): 1.4e-37
Smith-Waterman score: 893; 61.7% identity (80.6% similar) in 227 aa overlap (1-220:1-227)

               10        20        30        40           50       
pF1KE0 MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDPAPGV---QGYSVLNSLVGP
       ::::.: : :   .   :   .       :  .   .   :.: .   :. .:...:.::
CCDS92 MGNCVKYPLRNLSRKMCQEEQTSYMVVQTSEEGLAADAELPGPLLMLAQNCAVMHNLLGP
               10        20        30        40        50        60

        60         70        80        90       100       110      
pF1KE0 ACIFLRPSIAAT-QLDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTE
       :::::: ..: . : :: :::::::::. ::.:::.:.::::.::.:: ::::.::::::
CCDS92 ACIFLRKGFAENRQPDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTE
               70        80        90       100       110       120

        120          130       140       150       160       170   
pF1KE0 MELIEISQQIS---GGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGRIS
       :::::.::::.   ::.:::.::::::::::::::::::::.:::::::::::::::.::
CCDS92 MELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEIS
              130       140       150       160       170       180

           180       190       200       210       220
pF1KE0 VGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
       ..::: :.. :::.....:...::..:::::::: ::::::::::::
CCDS92 TSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR
              190       200       210       220       

>>CCDS31913.1 CABP1 gene_id:9478|Hs108|chr12              (370 aa)
 initn: 519 init1: 493 opt: 827  Z-score: 728.7  bits: 142.7 E(32554): 2.9e-34
Smith-Waterman score: 827; 59.8% identity (77.7% similar) in 224 aa overlap (5-220:153-370)

                                         10        20        30    
pF1KE0                           MGNCAKRPWRRGPKDPLQWLGSPPRGSCPS----
                                     :.::   .:  : .   .  ::  :.    
CCDS31 RPAPREEGARGSQRVLPQAHCRPREALPAAASRPSPSSPLPPARGRDGEERGLSPALGLR
            130       140       150       160       170       180  

               40        50        60         70        80         
pF1KE0 PSSSPKEQGDPAPGVQGYSVLNSLVGPACIFLRPSIA-ATQLDRELRPEEIEELQVAFQE
        :   . .:: .:..       : . :    ::: .. :   :: :::::::::. ::.:
CCDS31 GSLRARGRGDSVPAA------ASEADPFLHRLRPMLSSAFGQDRSLRPEEIEELREAFRE
            190             200       210       220       230      

      90       100       110       120          130       140      
pF1KE0 FDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLLA
       ::.:.::::.::.:: ::::.:::::::::::.::::.   ::.:::.::::::::::::
CCDS31 FDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLA
        240       250       260       270       280       290      

        150       160       170       180       190       200      
pF1KE0 ETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGD
       ::::::::.:::::::::::::::.::..::: :.. :::.....:...::..:::::::
CCDS31 ETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGD
        300       310       320       330       340       350      

        210       220
pF1KE0 GLVDFEEFVRMMSR
       : ::::::::::::
CCDS31 GRVDFEEFVRMMSR
        360       370

>>CCDS9204.1 CABP1 gene_id:9478|Hs108|chr12               (167 aa)
 initn: 534 init1: 493 opt: 794  Z-score: 704.3  bits: 137.1 E(32554): 6.6e-33
Smith-Waterman score: 794; 71.5% identity (89.7% similar) in 165 aa overlap (59-220:4-167)

       30        40        50        60        70        80        
pF1KE0 PSPSSSPKEQGDPAPGVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQ
                                     :.   :    .. :: :::::::::. ::.
CCDS92                            MGNCV-KYPLRNLSRKDRSLRPEEIEELREAFR
                                           10        20        30  

       90       100       110       120          130       140     
pF1KE0 EFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLL
       :::.:.::::.::.:: ::::.:::::::::::.::::.   ::.:::.:::::::::::
CCDS92 EFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLL
             40        50        60        70        80        90  

         150       160       170       180       190       200     
pF1KE0 AETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNG
       :::::::::.:::::::::::::::.::..::: :.. :::.....:...::..::::::
CCDS92 AETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNG
            100       110       120       130       140       150  

         210       220
pF1KE0 DGLVDFEEFVRMMSR
       :: ::::::::::::
CCDS92 DGRVDFEEFVRMMSR
            160       

>>CCDS12709.1 CABP5 gene_id:56344|Hs108|chr19             (173 aa)
 initn: 770 init1: 454 opt: 767  Z-score: 680.8  bits: 132.8 E(32554): 1.3e-31
Smith-Waterman score: 767; 66.9% identity (87.0% similar) in 169 aa overlap (55-220:5-173)

           30        40        50        60        70        80    
pF1KE0 RGSCPSPSSSPKEQGDPAPGVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQ
                                     .:::::::: .::  : .: :  .:::::.
CCDS12                           MQFPMGPACIFLRKGIAEKQRERPLGQDEIEELR
                                         10        20        30    

           90       100       110       120          130       140 
pF1KE0 VAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMG
        :: :::.::::.:.:..::  :::.:::::::::::..:::    ::.:::.:::::: 
CCDS12 EAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFDDFVELMT
           40        50        60        70        80        90    

             150       160       170       180       190       200 
pF1KE0 PKLLAETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDV
       :::::::: ::::.:.::::.::::::::.:.. ::. :.. ::::::. ::..:.....
CCDS12 PKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLVELQQAMQRLLGERLTPREISEVVREA
          100       110       120       130       140       150    

             210       220
pF1KE0 DLNGDGLVDFEEFVRMMSR
       :.:::: :::::::.::::
CCDS12 DVNGDGTVDFEEFVKMMSR
          160       170   

>>CCDS8166.1 CABP4 gene_id:57010|Hs108|chr11              (275 aa)
 initn: 743 init1: 422 opt: 722  Z-score: 639.4  bits: 125.8 E(32554): 2.7e-29
Smith-Waterman score: 722; 57.0% identity (76.2% similar) in 214 aa overlap (12-220:63-274)

                                  10        20        30        40 
pF1KE0                    MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDP
                                     ::. : .  ..:: ..  .:...:  .  :
CCDS81 EEPPLTRKRSKKERGLRGSRKRTGSSGEQTGPEAPGS-SNNPP-STGEGPAGAPPASPGP
             40        50        60         70         80        90

              50         60         70        80        90         
pF1KE0 APGVQGYSVL-NSLVGPACIFLRPSIAAT-QLDRELRPEEIEELQVAFQEFDRDRDGYIG
       : . :..    .::   :     : .  .   :::: :::..:::.::.::: ::::::.
CCDS81 ASSRQSHRHRPDSLHDAAQRTYGPLLNRVFGKDRELGPEELDELQAAFEEFDTDRDGYIS
              100       110       120       130       140       150

     100       110       120          130       140       150      
pF1KE0 CRELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLLAETADMIGVRE
        :::: ::::::::::::::.:.::.:.   ::.::::.::::.::::  ::: :.::::
CCDS81 HRELGDCMRTLGYMPTEMELLEVSQHIKMRMGGRVDFEEFVELIGPKLREETAHMLGVRE
              160       170       180       190       200       210

        160       170       180       190       200       210      
pF1KE0 LRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVR
       :: :::::: . ::::.:.::: :. ::::: :.  :.::.:..::::::: :::.::: 
CCDS81 LRIAFREFDRDRDGRITVAELREAVPALLGEPLAGPELDEMLREVDLNGDGTVDFDEFVM
              220       230       240       250       260       270

        220 
pF1KE0 MMSR 
       :.:: 
CCDS81 MLSRH
            

>>CCDS73333.1 CABP4 gene_id:57010|Hs108|chr11             (170 aa)
 initn: 705 init1: 422 opt: 703  Z-score: 625.5  bits: 122.5 E(32554): 1.6e-28
Smith-Waterman score: 703; 71.1% identity (86.8% similar) in 152 aa overlap (72-220:18-169)

              50        60        70        80        90       100 
pF1KE0 APGVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCR
                                     :::: :::..:::.::.::: ::::::. :
CCDS73              MTEPWLALGTSWTLPLQDRELGPEELDELQAAFEEFDTDRDGYISHR
                            10        20        30        40       

             110       120          130       140       150        
pF1KE0 ELGACMRTLGYMPTEMELIEISQQIS---GGKVDFEDFVELMGPKLLAETADMIGVRELR
       ::: ::::::::::::::.:.::.:.   ::.::::.::::.::::  ::: :.::::::
CCDS73 ELGDCMRTLGYMPTEMELLEVSQHIKMRMGGRVDFEEFVELIGPKLREETAHMLGVRELR
        50        60        70        80        90       100       

      160       170       180       190       200       210        
pF1KE0 DAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMM
        :::::: . ::::.:.::: :. ::::: :.  :.::.:..::::::: :::.::: :.
CCDS73 IAFREFDRDRDGRITVAELREAVPALLGEPLAGPELDEMLREVDLNGDGTVDFDEFVMML
       110       120       130       140       150       160       

      220 
pF1KE0 SR 
       :: 
CCDS73 SRH
       170

>>CCDS1832.1 CALM2 gene_id:805|Hs108|chr2                 (149 aa)
 initn: 374 init1: 148 opt: 403  Z-score: 366.6  bits: 74.4 E(32554): 4.2e-14
Smith-Waterman score: 403; 43.0% identity (74.5% similar) in 149 aa overlap (74-219:4-147)

            50        60        70        80        90       100   
pF1KE0 GVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCREL
                                     .:  :.: :.. ::. ::.: :: :  .::
CCDS18                            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
                                          10        20        30   

           110       120          130       140       150       160
pF1KE0 GACMRTLGYMPTEMELIEISQQISG---GKVDFEDFVELMGPKLLAETADMIGVRELRDA
       :. ::.::  ::: :: .. .....   : .:: .:. .:. :.     :  . .:.:.:
CCDS18 GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----KDTDSEEEIREA
            40        50        60        70            80         

              170       180       190       200       210       220
pF1KE0 FREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
       :: :: .:.: ::..::: ..  : ::.:...::::.....:..::: :..::::.::. 
CCDS18 FRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA
      90       100       110        120       130       140        

CCDS18 K
        

>>CCDS33061.1 CALM3 gene_id:808|Hs108|chr19               (149 aa)
 initn: 374 init1: 148 opt: 403  Z-score: 366.6  bits: 74.4 E(32554): 4.2e-14
Smith-Waterman score: 403; 43.0% identity (74.5% similar) in 149 aa overlap (74-219:4-147)

            50        60        70        80        90       100   
pF1KE0 GVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCREL
                                     .:  :.: :.. ::. ::.: :: :  .::
CCDS33                            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
                                          10        20        30   

           110       120          130       140       150       160
pF1KE0 GACMRTLGYMPTEMELIEISQQISG---GKVDFEDFVELMGPKLLAETADMIGVRELRDA
       :. ::.::  ::: :: .. .....   : .:: .:. .:. :.     :  . .:.:.:
CCDS33 GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----KDTDSEEEIREA
            40        50        60        70            80         

              170       180       190       200       210       220
pF1KE0 FREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
       :: :: .:.: ::..::: ..  : ::.:...::::.....:..::: :..::::.::. 
CCDS33 FRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA
      90       100       110        120       130       140        

CCDS33 K
        

>>CCDS9892.1 CALM1 gene_id:801|Hs108|chr14                (149 aa)
 initn: 374 init1: 148 opt: 403  Z-score: 366.6  bits: 74.4 E(32554): 4.2e-14
Smith-Waterman score: 403; 43.0% identity (74.5% similar) in 149 aa overlap (74-219:4-147)

            50        60        70        80        90       100   
pF1KE0 GVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCREL
                                     .:  :.: :.. ::. ::.: :: :  .::
CCDS98                            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKEL
                                          10        20        30   

           110       120          130       140       150       160
pF1KE0 GACMRTLGYMPTEMELIEISQQISG---GKVDFEDFVELMGPKLLAETADMIGVRELRDA
       :. ::.::  ::: :: .. .....   : .:: .:. .:. :.     :  . .:.:.:
CCDS98 GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM----KDTDSEEEIREA
            40        50        60        70            80         

              170       180       190       200       210       220
pF1KE0 FREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR
       :: :: .:.: ::..::: ..  : ::.:...::::.....:..::: :..::::.::. 
CCDS98 FRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA
      90       100       110        120       130       140        

CCDS98 K
        




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:13:54 2016 done: Thu Nov  3 18:13:54 2016
 Total Scan time:  2.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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