Result of FASTA (omim) for pF1KE0264
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0264, 415 aa
  1>>>pF1KE0264 415 - 415 aa - 415 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0773+/-0.000363; mu= 18.3119+/- 0.023
 mean_var=65.1900+/-13.187, 0's: 0 Z-trim(113.8): 229  B-trim: 821 in 1/51
 Lambda= 0.158849
 statistics sampled from 23044 (23294) to 23044 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.273), width:  16
 Scan time:  8.800

The best scores are:                                      opt bits E(85289)
NP_037495 (OMIM: 607064) procollagen C-endopeptida ( 415) 2848 661.6  1e-189
NP_002584 (OMIM: 600270) procollagen C-endopeptida ( 449) 1034 245.9 1.5e-64
XP_011518058 (OMIM: 602069) PREDICTED: neuropilin- ( 628)  514 126.8 1.5e-28
XP_011518057 (OMIM: 602069) PREDICTED: neuropilin- ( 656)  514 126.8 1.6e-28
XP_006717589 (OMIM: 602069) PREDICTED: neuropilin- ( 663)  514 126.8 1.6e-28
XP_006717588 (OMIM: 602069) PREDICTED: neuropilin- ( 888)  514 126.9   2e-28
XP_006717587 (OMIM: 602069) PREDICTED: neuropilin- ( 889)  514 126.9   2e-28
XP_016872354 (OMIM: 602069) PREDICTED: neuropilin- ( 899)  514 126.9   2e-28
XP_006717585 (OMIM: 602069) PREDICTED: neuropilin- ( 907)  514 126.9   2e-28
XP_006717584 (OMIM: 602069) PREDICTED: neuropilin- ( 924)  514 126.9 2.1e-28
NP_963840 (OMIM: 612320) CUB domain-containing pro ( 449)  494 122.1 2.7e-27
XP_011518013 (OMIM: 261100,602997) PREDICTED: cubi (2237)  384 97.4 3.9e-19
XP_011518012 (OMIM: 261100,602997) PREDICTED: cubi (2277)  384 97.4 3.9e-19
XP_011518011 (OMIM: 261100,602997) PREDICTED: cubi (2285)  384 97.4   4e-19
XP_011518010 (OMIM: 261100,602997) PREDICTED: cubi (2867)  384 97.4 4.8e-19
NP_001072 (OMIM: 261100,602997) cubilin precursor  (3623)  384 97.5 5.7e-19
XP_006716449 (OMIM: 112264,614856) PREDICTED: bone ( 813)  323 83.1 2.8e-15
XP_016869227 (OMIM: 112264,614856) PREDICTED: bone ( 717)  319 82.1 4.7e-15
NP_001190 (OMIM: 112264,614856) bone morphogenetic ( 730)  318 81.9 5.6e-15
NP_006120 (OMIM: 112264,614856) bone morphogenetic ( 986)  317 81.8 8.4e-15
XP_011530516 (OMIM: 606742,613087) PREDICTED: toll ( 837)  311 80.4 1.9e-14
XP_016864059 (OMIM: 606742,613087) PREDICTED: toll ( 964)  311 80.4 2.1e-14
NP_036596 (OMIM: 606742,613087) tolloid-like prote (1013)  311 80.4 2.2e-14
NP_036597 (OMIM: 606743) tolloid-like protein 2 pr (1015)  307 79.5 4.2e-14
NP_009046 (OMIM: 600410) tumor necrosis factor-ind ( 277)  293 75.9 1.4e-13
NP_113621 (OMIM: 606227,609549,611040) membrane fr ( 579)  291 75.7 3.4e-13
XP_011542919 (OMIM: 112264,614856) PREDICTED: bone ( 622)  285 74.3 9.4e-13
XP_016855682 (OMIM: 608398) PREDICTED: CUB and sus (2294)  283 74.2 3.7e-12
XP_016855681 (OMIM: 608398) PREDICTED: CUB and sus (2315)  283 74.2 3.7e-12
XP_016855680 (OMIM: 608398) PREDICTED: CUB and sus (2973)  283 74.3 4.5e-12
XP_016855679 (OMIM: 608398) PREDICTED: CUB and sus (3362)  283 74.3   5e-12
NP_443128 (OMIM: 608398) CUB and sushi domain-cont (3487)  283 74.3 5.2e-12
XP_016855678 (OMIM: 608398) PREDICTED: CUB and sus (3506)  283 74.3 5.2e-12
XP_016855683 (OMIM: 608398) PREDICTED: CUB and sus (3566)  283 74.3 5.3e-12
XP_016855677 (OMIM: 608398) PREDICTED: CUB and sus (3567)  283 74.3 5.3e-12
XP_016855676 (OMIM: 608398) PREDICTED: CUB and sus (3606)  283 74.3 5.3e-12
XP_016855674 (OMIM: 608398) PREDICTED: CUB and sus (3607)  283 74.3 5.3e-12
XP_016855675 (OMIM: 608398) PREDICTED: CUB and sus (3607)  283 74.3 5.3e-12
NP_001268885 (OMIM: 608398) CUB and sushi domain-c (3631)  283 74.3 5.3e-12
XP_011537717 (OMIM: 601969) PREDICTED: deleted in  (1766)  276 72.5 9.1e-12
XP_011537716 (OMIM: 601969) PREDICTED: deleted in  (1783)  276 72.5 9.2e-12
NP_004397 (OMIM: 601969) deleted in malignant brai (1785)  276 72.5 9.2e-12
NP_957716 (OMIM: 602070) neuropilin-2 isoform 6 pr ( 555)  270 70.8 9.3e-12
NP_001019800 (OMIM: 602069) neuropilin-1 isoform c ( 609)  270 70.9   1e-11
XP_016871287 (OMIM: 601969) PREDICTED: deleted in  (1990)  276 72.6   1e-11
NP_001019799 (OMIM: 602069) neuropilin-1 isoform b ( 644)  270 70.9   1e-11
XP_011537715 (OMIM: 601969) PREDICTED: deleted in  (2282)  276 72.6 1.1e-11
NP_060049 (OMIM: 601969) deleted in malignant brai (2403)  276 72.6 1.2e-11
XP_011537713 (OMIM: 601969) PREDICTED: deleted in  (2403)  276 72.6 1.2e-11
XP_011537711 (OMIM: 601969) PREDICTED: deleted in  (2411)  276 72.6 1.2e-11


>>NP_037495 (OMIM: 607064) procollagen C-endopeptidase e  (415 aa)
 initn: 2848 init1: 2848 opt: 2848  Z-score: 3526.9  bits: 661.6 E(85289): 1e-189
Smith-Waterman score: 2848; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)

               10        20        30        40        50        60
pF1KE0 MRGANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGESGFIGSEGFPGVYPPNSKCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MRGANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGESGFIGSEGFPGVYPPNSKCT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 WKITVPEGKVVVLNFRFIDLESDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGALVSSGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 WKITVPEGKVVVLNFRFIDLESDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGALVSSGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAGVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 KMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAGVT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 CVWHIVAPKNQLIELKFEKFDVERDNYCRYDYVAVFNGGEVNDARRIGKYCGDSPPAPIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 CVWHIVAPKNQLIELKFEKFDVERDNYCRYDYVAVFNGGEVNDARRIGKYCGDSPPAPIV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKPTVALCQQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 SERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKPTVALCQQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 CRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQAGKNMSARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 CRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQAGKNMSARL
              310       320       330       340       350       360

              370       380       390       400       410     
pF1KE0 TVVCKQCPLLRRGLNYIIMGQVGEDGRGKIMPNSFIMMFKTKNQKLLDALKNKQC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 TVVCKQCPLLRRGLNYIIMGQVGEDGRGKIMPNSFIMMFKTKNQKLLDALKNKQC
              370       380       390       400       410     

>>NP_002584 (OMIM: 600270) procollagen C-endopeptidase e  (449 aa)
 initn: 1324 init1: 711 opt: 1034  Z-score: 1279.7  bits: 245.9 E(85289): 1.5e-64
Smith-Waterman score: 1328; 44.5% identity (71.6% similar) in 436 aa overlap (4-415:7-437)

                  10        20          30        40        50     
pF1KE0    MRGANAWAPLCLLLAAATQLSRQQSPE--RPVFTCGGILTGESGFIGSEGFPGVYPP
             :.  .:: :   :   ... :.:.  :::: ::: . ::::...:::::..:::
NP_002 MLPAATASLLGPL-LTACALLPFAQGQTPNYTRPVFLCGGDVKGESGYVASEGFPNLYPP
               10         20        30        40        50         

          60        70        80        90        100       110    
pF1KE0 NSKCTWKITVPEGKVVVLNFRFIDLESDNLCRYDFVDVYNGHA-NGQRIGRFCGTFRPGA
       :..: : ::::::..: :.:: .:::    :::: ..:. : . .:::.:::::::::. 
NP_002 NKECIWTITVPEGQTVSLSFRVFDLELHPACRYDALEVFAGSGTSGQRLGRFCGTFRPAP
      60        70        80        90       100       110         

          120       130       140       150       160       170    
pF1KE0 LVSSGNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRD
       ::. ::.. ..: .: .:.: ::.  .:.   .    :.::: :.. .:.. :::::. :
NP_002 LVAPGNQVTLRMTTDEGTGGRGFLLWYSGRATSGTEHQFCGGRLEKAQGTLTTPNWPESD
     120       130       140       150       160       170         

          180       190       200       210       220       230    
pF1KE0 YPAGVTCVWHIVAPKNQLIELKFEKFDVERDNYCRYDYVAVFNGGEVNDARRIGKYCGDS
       :: :..: :::.:: .:.: : :::::.: :.::::: :.::::.  .:.::.::.:::.
NP_002 YPPGISCSWHIIAPPDQVIALTFEKFDLEPDTYCRYDSVSVFNGAVSDDSRRLGKFCGDA
     180       190       200       210       220       230         

          240       250       260       270                        
pF1KE0 PPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPK-------------------KLPTT
        :. : :: ::::.::.::::.::::: . :   :.                   :::  
NP_002 VPGSISSEGNELLVQFVSDLSVTADGFSASYKTLPRGTAKEGQGPGPKRGTEPKVKLPPK
     240       250       260       270       280       290         

         280       290       300       310       320       330     
pF1KE0 TEQPVTTTFPVTTGLKPTVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDG-SLHA
       .. :  :    ..   ::   : ..:::::::..:.:.:..:...:: . . . : .: .
NP_002 SQPPEKTEESPSAPDAPT---CPKQCRRTGTLQSNFCASSLVVTATVKSMVREPGEGLAV
     300       310          320       330       340       350      

          340       350       360       370       380       390    
pF1KE0 TVSIINIYKEGNLAIQQAGKNMSARLTVVCKQCPLLRRGLNYIIMGQVGEDGRGKIMP-N
       :::.:. :: :.: . .   . : .. : ::::: ...:..:..:::: :..:: ..: .
NP_002 TVSLIGAYKTGGLDLPSPPTGASLKFYVPCKQCPPMKKGVSYLLMGQV-EENRGPVLPPE
        360       370       380       390       400        410     

           400       410                 
pF1KE0 SFIMMFKTKNQKLLDALKNKQC            
       ::... . .....:  :....:            
NP_002 SFVVLHRPNQDQILTNLSKRKCPSQPVRAAASQD
         420       430       440         

>>XP_011518058 (OMIM: 602069) PREDICTED: neuropilin-1 is  (628 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 633.5  bits: 126.8 E(85289): 1.5e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_011     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_011 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_011 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_011 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_011 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_011 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         

>>XP_011518057 (OMIM: 602069) PREDICTED: neuropilin-1 is  (656 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 633.3  bits: 126.8 E(85289): 1.6e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_011     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_011 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_011 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_011 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_011 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_011 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         

>>XP_006717589 (OMIM: 602069) PREDICTED: neuropilin-1 is  (663 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 633.2  bits: 126.8 E(85289): 1.6e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_006     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_006 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_006 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_006 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_006 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_006 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         

>>XP_006717588 (OMIM: 602069) PREDICTED: neuropilin-1 is  (888 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 631.4  bits: 126.9 E(85289): 2e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_006     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_006 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_006 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_006 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_006 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_006 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         

>>XP_006717587 (OMIM: 602069) PREDICTED: neuropilin-1 is  (889 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 631.3  bits: 126.9 E(85289): 2e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_006     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_006 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_006 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_006 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_006 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_006 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         

>>XP_016872354 (OMIM: 602069) PREDICTED: neuropilin-1 is  (899 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 631.3  bits: 126.9 E(85289): 2e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_016     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_016 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_016 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_016 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_016 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_016 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         

>>XP_006717585 (OMIM: 602069) PREDICTED: neuropilin-1 is  (907 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 631.2  bits: 126.9 E(85289): 2e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_006     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_006 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_006 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_006 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_006 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_006 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         

>>XP_006717584 (OMIM: 602069) PREDICTED: neuropilin-1 is  (924 aa)
 initn: 317 init1: 129 opt: 514  Z-score: 631.1  bits: 126.9 E(85289): 2.1e-28
Smith-Waterman score: 514; 35.4% identity (64.6% similar) in 243 aa overlap (33-265:27-262)

             10        20        30        40         50        60 
pF1KE0 GANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGES-GFIGSEGFPGVYPPNSKCTW
                                     ::  .  :: :.. : :.:  : :. :: :
XP_006     MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEW
                   10        20        30        40        50      

               70         80        90        100       110        
pF1KE0 KITVPEG-KVVVLNFR-FIDLESDNLCRYDFVDVYNG-HANGQRIGRFCGTFRPGALVSS
        : .:.  . ...::   .::: :  :.::.:.:..: . ::.  :.::: . :  .:::
XP_006 LIQAPDPYQRIMINFNPHFDLE-DRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSS
         60        70         80        90       100       110     

      120       130       140       150       160       170        
pF1KE0 GNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAG
       :  ......:: .: : ::   .   :  .:: . :.     ::: .:.:..:.. :: .
XP_006 GPFLFIKFVSDYETHGAGFSIRY---EIFKRGPE-CSQNYTTPSGVIKSPGFPEK-YPNS
         120       130          140        150       160        170

      180       190       200             210       220       230  
pF1KE0 VTCVWHIVAPKNQLIELKFEKFDVERDN------YCRYDYVAVFNGGEVNDARRIGKYCG
       . :.. . .:: . : :.::.::.: :.      .:::: . ...:   . . .::.:::
XP_006 LECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFP-DVGPHIGRYCG
              180       190       200       210        220         

            240       250       260       270       280       290  
pF1KE0 DSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKP
       .. :. : :  . : . : .: ... .:: ..:                           
XP_006 QKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSD
     230       240       250       260       270       280         

            300       310       320       330       340       350  
pF1KE0 TVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQA
                                                                   
XP_006 QITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKET
     290       300       310       320       330       340         




415 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:28:59 2016 done: Thu Nov  3 18:29:01 2016
 Total Scan time:  8.800 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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