Result of FASTA (omim) for
pF1KE0263
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0263, 132 aa
1>>>pF1KE0263 132 - 132 aa - 132 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5631+/-0.00045; mu= 9.2471+/- 0.028
mean_var=57.7379+/-11.348, 0's: 0 Z-trim(109.6): 27 B-trim: 0 in 0/51
Lambda= 0.168789
statistics sampled from 17765 (17792) to 17765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.209), width: 16
Scan time: 4.410
The best scores are: opt bits E(85289)
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 585 150.8 6.1e-37
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 583 150.3 8.6e-37
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 511 132.8 1.6e-31
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 486 126.7 1.1e-29
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 473 123.5 9.9e-29
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 463 121.1 5.5e-28
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 442 116.0 2.3e-26
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 385 102.1 3e-22
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 369 98.2 4e-21
NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 324 87.2 6.2e-18
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 299 81.1 5.8e-16
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 283 77.2 8.7e-15
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 283 77.2 8.7e-15
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 283 77.2 8.7e-15
NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 278 76.0 2e-14
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 275 75.3 4.7e-14
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 267 73.3 1.3e-13
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 240 66.8 1.2e-11
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 232 64.8 5.3e-11
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 230 64.3 7.6e-11
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 229 64.1 7.6e-11
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 178 51.7 4e-07
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 141 42.6 0.00021
NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 133 40.7 0.00056
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 124 38.5 0.0037
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 124 38.5 0.005
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 124 38.5 0.005
>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa)
initn: 585 init1: 585 opt: 585 Z-score: 784.2 bits: 150.8 E(85289): 6.1e-37
Smith-Waterman score: 585; 67.4% identity (90.2% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD
: . :::::::::::::.:::: :::..:.:....:.:::: :: : ..::::::.:..
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM
:.::::::.::.::::::::.:: .::. ::. .::.: :::::::::.:. :::.::::
NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
70 80 90 100 110 120
130
pF1KE0 NNIVSTRIYEKV
...: :::::::
NP_002 KGVVCTRIYEKV
130
>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa)
initn: 602 init1: 567 opt: 583 Z-score: 781.6 bits: 150.3 E(85289): 8.6e-37
Smith-Waterman score: 583; 64.1% identity (91.6% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD
: . :.:::::::::::.:::::.::.::.:..::..::.. :::.: ..::..::.:..
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM
:.::: ::.::::.:::.:::::::::..: ..::::: :: :::::: :.:.:::: :
NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
70 80 90 100 110 120
130
pF1KE0 NNIVSTRIYEKV
....:::.::.
NP_001 KGVTSTRVYERA
130
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 511 init1: 511 opt: 511 Z-score: 686.7 bits: 132.8 E(85289): 1.6e-31
Smith-Waterman score: 511; 55.7% identity (86.3% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD
::. ::::::::.:.::.:::: :::.::.:..:...:::. : .: ..:..:.:.:..
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM
:.:::::: ::::::::.::::: .::..:...:.::: :.:::. :...: :...
NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
70 80 90 100 110 120
130
pF1KE0 NNIVSTRIYEKV
.. : :: :::
NP_004 GTAVCTRTYEKEA
130
>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa)
initn: 499 init1: 482 opt: 486 Z-score: 654.2 bits: 126.7 E(85289): 1.1e-29
Smith-Waterman score: 486; 56.7% identity (89.2% similar) in 120 aa overlap (1-120:1-120)
10 20 30 40 50 60
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD
::. ::::::::.:.::.:::: :::.::.:..:...:::. : .: ..:..:.:.:..
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM
:.:::::: ::::::::.::::: .::..:...:.::: :.:::. :...: :... :.
XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL
70 80 90 100 110 120
130
pF1KE0 NNIVSTRIYEKV
XP_011 QLRNVK
>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa)
initn: 473 init1: 473 opt: 473 Z-score: 636.8 bits: 123.5 E(85289): 9.9e-29
Smith-Waterman score: 473; 53.4% identity (86.3% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD
::: : .::::..:.::..::: :::.::.:......:::: :: .: ..::: :.:..
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM
:.:::.:::::::::::.:. ::...:.. ...:.::: ::::.. :.: : :::. .
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
70 80 90 100 110 120
130
pF1KE0 NNIVSTRIYEKV
...:..: :::
NP_001 GDVVAVRHYEKA
130
>>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa)
initn: 463 init1: 463 opt: 463 Z-score: 623.5 bits: 121.1 E(85289): 5.5e-28
Smith-Waterman score: 463; 51.1% identity (84.0% similar) in 131 aa overlap (2-132:4-134)
10 20 30 40 50
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSF
:. . : :.::.:..:..:::::::..: :.:....:: :. ::: .::.:::..
NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QDTKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVEC
. :..: :::.:.:::::.::.... .. .:.... :.: :::.:: ::. : :.::::
NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
120 130
pF1KE0 KMNNIVSTRIYEKV
:::.. :::::::
NP_001 VMNNVTCTRIYEKVE
130
>>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa)
initn: 456 init1: 442 opt: 442 Z-score: 594.3 bits: 116.0 E(85289): 2.3e-26
Smith-Waterman score: 442; 56.0% identity (87.9% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD
::: : .::::..:.::..::: :::.::.:......:::: :: .: ..::: :.:..
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM
:.:::.:::::::::::.:. ::...:.. ...:.::: ::::.. :.: : :::.
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
70 80 90 100 110 120
130
pF1KE0 NNIVSTRIYEKV
NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
130 140 150 160
>>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa)
initn: 497 init1: 385 opt: 385 Z-score: 520.3 bits: 102.1 E(85289): 3e-22
Smith-Waterman score: 479; 51.4% identity (79.6% similar) in 142 aa overlap (1-131:1-142)
10 20 30 40
pF1KE0 MVEPFLGTWKLVSSENFEDYMKEL-----------GVNFAARNMAGLVKPTVTISVDGKM
::. ::::::::.:.::.:::: : ::.::.:..:...:::. : .: .
NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKI
.:..:.:.:..:.:::::: ::::::::.::::: .::..:...:.::: :.:::. :..
NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL
70 80 90 100 110 120
110 120 130
pF1KE0 VDEKMVVECKMNNIVSTRIYEKV
.: :... .. : :: :::
NP_001 IDGKLILTLTHGTAVCTRTYEKEA
130 140
>>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa)
initn: 368 init1: 368 opt: 369 Z-score: 500.1 bits: 98.2 E(85289): 4e-21
Smith-Waterman score: 369; 46.4% identity (80.8% similar) in 125 aa overlap (9-131:8-127)
10 20 30 40 50
pF1KE0 MVEPFLGTWK--LVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSF
:. :... : .. ::.::.:......:::: :: .: ..::: :.:
NP_001 MQLKEKDWRSALIKTAN-----QQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QDTKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVEC
..:.:::.:::::::::::.:. ::...:.. ...:.::: ::::.. :.: : :::.
NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
60 70 80 90 100 110
120 130
pF1KE0 KMNNIVSTRIYEKV
....:..: :::
NP_001 TFGDVVAVRHYEKA
120
>>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa)
initn: 350 init1: 324 opt: 324 Z-score: 443.0 bits: 87.2 E(85289): 6.2e-18
Smith-Waterman score: 324; 59.8% identity (89.0% similar) in 82 aa overlap (1-82:1-82)
10 20 30 40 50 60
pF1KE0 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD
::: : .::::..:.::..::: :::.::.:......:::: :: .: ..::: :.:..
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM
:.:::.:::::::::::.:. :
NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE
70 80 90
132 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:32:59 2016 done: Thu Nov 3 18:33:00 2016
Total Scan time: 4.410 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]