Result of FASTA (omim) for pF1KE0244
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0244, 134 aa
  1>>>pF1KE0244 134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0631+/-0.00024; mu= 7.9414+/- 0.015
 mean_var=75.6595+/-14.989, 0's: 0 Z-trim(122.6): 26  B-trim: 36 in 1/57
 Lambda= 0.147449
 statistics sampled from 40847 (40873) to 40847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.835), E-opt: 0.2 (0.479), width:  16
 Scan time:  4.800

The best scores are:                                      opt bits E(85289)
NP_001308936 (OMIM: 276300,600259,614337) mismatch ( 756)  474 109.1 1.2e-23
NP_001308937 (OMIM: 276300,600259,614337) mismatch ( 756)  474 109.1 1.2e-23
NP_001308935 (OMIM: 276300,600259,614337) mismatch ( 810)  392 91.7 2.3e-18
NP_000526 (OMIM: 276300,600259,614337) mismatch re ( 862)  392 91.7 2.5e-18
NP_001308943 (OMIM: 276300,600259,614337) mismatch ( 873)  392 91.7 2.5e-18
NP_001308944 (OMIM: 276300,600259,614337) mismatch ( 759)  387 90.6 4.6e-18
NP_001308942 (OMIM: 276300,600259,614337) mismatch ( 671)  291 70.2 5.8e-12
NP_001308939 (OMIM: 276300,600259,614337) mismatch ( 675)  284 68.7 1.6e-11
NP_001308934 (OMIM: 276300,600259,614337) mismatch ( 727)  284 68.7 1.7e-11
NP_001308932 (OMIM: 276300,600259,614337) mismatch ( 727)  284 68.7 1.7e-11
NP_001308933 (OMIM: 276300,600259,614337) mismatch ( 727)  284 68.7 1.7e-11
NP_001308938 (OMIM: 276300,600259,614337) mismatch ( 738)  284 68.7 1.8e-11


>>NP_001308936 (OMIM: 276300,600259,614337) mismatch rep  (756 aa)
 initn: 471 init1: 471 opt: 474  Z-score: 545.3  bits: 109.1 E(85289): 1.2e-23
Smith-Waterman score: 474; 62.4% identity (76.0% similar) in 125 aa overlap (1-123:1-125)

               10        20        30        40        50        60
pF1KE0 MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTL
       ::::::::::::::::::::.::::::::.:::.::::::::::.::::::::.::::::
NP_001 MWGRRRKLRRLNDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTL
               10        20        30        40        50        60

               70        80        90         100       110        
pF1KE0 PVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ--PAKLTPRSTPPHPCSLEDN
       :::::::::::::. : .  ..   : .  :  .    :   .:  :        :...:
NP_001 PVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKEN
               70        80        90       100       110       120

      120       130                                                
pF1KE0 VITVFSSVKNGPGSSR                                            
       . .::                                                       
NP_001 IGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTD
              130       140       150       160       170       180

>>NP_001308937 (OMIM: 276300,600259,614337) mismatch rep  (756 aa)
 initn: 471 init1: 471 opt: 474  Z-score: 545.3  bits: 109.1 E(85289): 1.2e-23
Smith-Waterman score: 474; 62.4% identity (76.0% similar) in 125 aa overlap (1-123:1-125)

               10        20        30        40        50        60
pF1KE0 MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTL
       ::::::::::::::::::::.::::::::.:::.::::::::::.::::::::.::::::
NP_001 MWGRRRKLRRLNDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTL
               10        20        30        40        50        60

               70        80        90         100       110        
pF1KE0 PVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ--PAKLTPRSTPPHPCSLEDN
       :::::::::::::. : .  ..   : .  :  .    :   .:  :        :...:
NP_001 PVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKEN
               70        80        90       100       110       120

      120       130                                                
pF1KE0 VITVFSSVKNGPGSSR                                            
       . .::                                                       
NP_001 IGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTD
              130       140       150       160       170       180

>>NP_001308935 (OMIM: 276300,600259,614337) mismatch rep  (810 aa)
 initn: 383 init1: 383 opt: 392  Z-score: 450.6  bits: 91.7 E(85289): 2.3e-18
Smith-Waterman score: 392; 58.3% identity (73.9% similar) in 115 aa overlap (11-123:117-231)

                                   10        20        30        40
pF1KE0                     MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQK
                                     :.::::::::.::::::::.:::.::::::
NP_001 HHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQK
         90       100       110       120       130       140      

               50        60        70        80        90          
pF1KE0 TPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ-
       ::::.::::::::.:::::::::::::::::::. : .  ..   : .  :  .    : 
NP_001 TPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQL
        150       160       170       180       190       200      

      100       110       120       130                            
pF1KE0 -PAKLTPRSTPPHPCSLEDNVITVFSSVKNGPGSSR                        
         .:  :        :...:. .::                                   
NP_001 GQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNL
        210       220       230       240       250       260      

>>NP_000526 (OMIM: 276300,600259,614337) mismatch repair  (862 aa)
 initn: 383 init1: 383 opt: 392  Z-score: 450.2  bits: 91.7 E(85289): 2.5e-18
Smith-Waterman score: 392; 58.3% identity (73.9% similar) in 115 aa overlap (11-123:117-231)

                                   10        20        30        40
pF1KE0                     MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQK
                                     :.::::::::.::::::::.:::.::::::
NP_000 HHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQK
         90       100       110       120       130       140      

               50        60        70        80        90          
pF1KE0 TPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ-
       ::::.::::::::.:::::::::::::::::::. : .  ..   : .  :  .    : 
NP_000 TPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQL
        150       160       170       180       190       200      

      100       110       120       130                            
pF1KE0 -PAKLTPRSTPPHPCSLEDNVITVFSSVKNGPGSSR                        
         .:  :        :...:. .::                                   
NP_000 GQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNL
        210       220       230       240       250       260      

>>NP_001308943 (OMIM: 276300,600259,614337) mismatch rep  (873 aa)
 initn: 383 init1: 383 opt: 392  Z-score: 450.1  bits: 91.7 E(85289): 2.5e-18
Smith-Waterman score: 392; 58.3% identity (73.9% similar) in 115 aa overlap (11-123:117-231)

                                   10        20        30        40
pF1KE0                     MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQK
                                     :.::::::::.::::::::.:::.::::::
NP_001 HHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQK
         90       100       110       120       130       140      

               50        60        70        80        90          
pF1KE0 TPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ-
       ::::.::::::::.:::::::::::::::::::. : .  ..   : .  :  .    : 
NP_001 TPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQL
        150       160       170       180       190       200      

      100       110       120       130                            
pF1KE0 -PAKLTPRSTPPHPCSLEDNVITVFSSVKNGPGSSR                        
         .:  :        :...:. .::                                   
NP_001 GQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNL
        210       220       230       240       250       260      

>>NP_001308944 (OMIM: 276300,600259,614337) mismatch rep  (759 aa)
 initn: 383 init1: 383 opt: 387  Z-score: 445.3  bits: 90.6 E(85289): 4.6e-18
Smith-Waterman score: 387; 57.9% identity (73.7% similar) in 114 aa overlap (12-123:15-128)

                  10        20        30        40        50       
pF1KE0    MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLF
                     .::::::::.::::::::.:::.::::::::::.::::::::.:::
NP_001 MGLSLNTPCLVFSHSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLF
               10        20        30        40        50        60

        60        70        80        90         100       110     
pF1KE0 STLPVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ--PAKLTPRSTPPHPCSL
       ::::::::::::::::. : .  ..   : .  :  .    :   .:  :        :.
NP_001 STLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSI
               70        80        90       100       110       120

         120       130                                             
pF1KE0 EDNVITVFSSVKNGPGSSR                                         
       ..:. .::                                                    
NP_001 KENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRS
              130       140       150       160       170       180

>>NP_001308942 (OMIM: 276300,600259,614337) mismatch rep  (671 aa)
 initn: 291 init1: 291 opt: 291  Z-score: 335.8  bits: 70.2 E(85289): 5.8e-12
Smith-Waterman score: 291; 82.4% identity (96.1% similar) in 51 aa overlap (30-80:1-51)

               10        20        30        40        50        60
pF1KE0 MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTL
                                    .:::.::::::::::.::::::::.::::::
NP_001                              MFDHNGKIIQKTPYPRPRGTTVSVQQLFSTL
                                            10        20        30 

               70        80        90       100       110       120
pF1KE0 PVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQPAKLTPRSTPPHPCSLEDNVI
       ::::::::::::: .. .::                                        
NP_001 PVRHKEFQRNIKKLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGR
              40        50        60        70        80        90 

>>NP_001308939 (OMIM: 276300,600259,614337) mismatch rep  (675 aa)
 initn: 280 init1: 280 opt: 284  Z-score: 327.7  bits: 68.7 E(85289): 1.6e-11
Smith-Waterman score: 284; 52.1% identity (68.8% similar) in 96 aa overlap (30-123:1-96)

               10        20        30        40        50        60
pF1KE0 MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTL
                                    .:::.::::::::::.::::::::.::::::
NP_001                              MFDHNGKIIQKTPYPRPRGTTVSVQQLFSTL
                                            10        20        30 

               70        80        90         100       110        
pF1KE0 PVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ--PAKLTPRSTPPHPCSLEDN
       :::::::::::::. : .  ..   : .  :  .    :   .:  :        :...:
NP_001 PVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKEN
              40        50        60        70        80        90 

      120       130                                                
pF1KE0 VITVFSSVKNGPGSSR                                            
       . .::                                                       
NP_001 IGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTD
             100       110       120       130       140       150 

>>NP_001308934 (OMIM: 276300,600259,614337) mismatch rep  (727 aa)
 initn: 280 init1: 280 opt: 284  Z-score: 327.2  bits: 68.7 E(85289): 1.7e-11
Smith-Waterman score: 284; 52.1% identity (68.8% similar) in 96 aa overlap (30-123:1-96)

               10        20        30        40        50        60
pF1KE0 MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTL
                                    .:::.::::::::::.::::::::.::::::
NP_001                              MFDHNGKIIQKTPYPRPRGTTVSVQQLFSTL
                                            10        20        30 

               70        80        90         100       110        
pF1KE0 PVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ--PAKLTPRSTPPHPCSLEDN
       :::::::::::::. : .  ..   : .  :  .    :   .:  :        :...:
NP_001 PVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKEN
              40        50        60        70        80        90 

      120       130                                                
pF1KE0 VITVFSSVKNGPGSSR                                            
       . .::                                                       
NP_001 IGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTD
             100       110       120       130       140       150 

>>NP_001308932 (OMIM: 276300,600259,614337) mismatch rep  (727 aa)
 initn: 280 init1: 280 opt: 284  Z-score: 327.2  bits: 68.7 E(85289): 1.7e-11
Smith-Waterman score: 284; 52.1% identity (68.8% similar) in 96 aa overlap (30-123:1-96)

               10        20        30        40        50        60
pF1KE0 MWGRRRKLRRLNDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTL
                                    .:::.::::::::::.::::::::.::::::
NP_001                              MFDHNGKIIQKTPYPRPRGTTVSVQQLFSTL
                                            10        20        30 

               70        80        90         100       110        
pF1KE0 PVRHKEFQRNIKKKRACFPFAFCRDCQFLEGSPAMLPVQ--PAKLTPRSTPPHPCSLEDN
       :::::::::::::. : .  ..   : .  :  .    :   .:  :        :...:
NP_001 PVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKEN
              40        50        60        70        80        90 

      120       130                                                
pF1KE0 VITVFSSVKNGPGSSR                                            
       . .::                                                       
NP_001 IGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTD
             100       110       120       130       140       150 




134 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:32:37 2016 done: Thu Nov  3 19:32:37 2016
 Total Scan time:  4.800 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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