GENSCAN 1.0	Date run:  3-Nov-116	Time: 19:33:19

Sequence gi568815591r:75188120_75316047 : 127928 bp : 47.65% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.20 Intr -   1137   1096   42  1  0   85  105    15 0.117   1.11
 1.19 Intr -   3677   3619   59  1  2   65   80    53 0.499   0.73
 1.18 Intr -   4111   3928  184  2  1   94   97   167 0.979  17.05
 1.17 Intr -   4861   4780   82  1  1   43  111    82 0.170   5.21
 1.16 Intr -   5864   5797   68  0  2   74   61    34 0.152  -2.08
 1.15 Intr -   6593   6538   56  1  2  102   81    29 0.723   2.22
 1.14 Intr -   8677   8494  184  2  1   81   78    94 0.595   6.55
 1.13 Intr -   8920   8855   66  2  0   62  103    97 0.940   7.48
 1.12 Intr -   9930   9829  102  1  0  120  111    -6 0.967   5.05
 1.11 Intr -  11606  11532   75  0  0   38  116    69 0.893   4.19
 1.10 Intr -  12060  12002   59  2  2  116  116   -41 0.914   0.03
 1.09 Intr -  13185  13002  184  1  1   88  106   134 0.985  14.05
 1.08 Intr -  14494  14423   72  2  0   84  111    42 0.954   5.48
 1.07 Intr -  16170  16082   89  2  2   12   81    75 0.018  -1.19
 1.06 Intr -  21440  21257  184  0  1   36  116    73 0.062   3.75
 1.05 Intr -  27702  27637   66  1  0   60   80    76 0.787   2.88
 1.04 Intr -  29145  29035  111  1  0   65  123    71 0.838   8.65
 1.03 Intr -  37536  37518   19  0  1   79  105    19 0.069  -1.12
 1.02 Intr -  47268  47241   28  2  1  120   60    -1 0.178  -1.58
 1.01 Init -  49286  49174  113  2  2   74  115   236 0.373  24.58
 1.00 Prom -  76169  76130   40                              -3.16

 2.00 Prom +  76297  76336   40                              -7.36
 2.01 Init +  80484  80492    9  2  0  100   62     3 0.467  -0.66
 2.02 Intr +  81309  81477  169  2  1   91   75   123 0.968  10.82
 2.03 Term +  82770  82852   83  1  2   77   50    74 0.939   0.36
 2.04 PlyA +  82961  82966    6                              -0.45

 3.00 Prom +  84942  84981   40                              -3.96
 3.01 Init +  91003  91061   59  0  2   82   85    24 0.497   2.44
 3.02 Intr +  93078  93253  176  0  2   42   94    94 0.281   4.98
 3.03 Intr +  94249  94467  219  2  0   42   54   265 0.471  16.77
 3.04 Intr +  95500  95558   59  2  2   86  116    35 0.939   4.70
 3.05 Intr +  96545  96675  131  1  2   53   17    89 0.776  -2.21
 3.06 Intr +  98577  98820  244  0  1   80   90   268 0.974  23.70
 3.07 Term +  99901 100005  105  0  0  110   43    91 0.992   5.21
 3.08 PlyA + 101171 101176    6                               1.05

 4.06 PlyA - 101184 101179    6                               1.05
 4.05 Term - 102820 102764   57  1  0   25   48    95 0.169  -3.11
 4.04 Intr - 107970 107822  149  1  2    3   87   109 0.625   2.25
 4.03 Intr - 109641 109555   87  1  0   62   97   126 0.997  10.84
 4.02 Intr - 111674 111535  140  1  2   50  111   107 0.961   9.31
 4.01 Init - 112003 111936   68  1  2   76   48    50 0.940   0.34
 4.00 Prom - 113395 113356   40                              -7.56

 5.00 Prom + 120170 120209   40                              -5.16
 5.01 Init + 121052 121181  130  1  1   63   94    80 0.221   6.42
 5.02 Intr + 122177 122395  219  0  0   42   54   265 0.466  16.77
 5.03 Intr + 123428 123486   59  0  2   86  116    35 0.939   4.70
 5.04 Intr + 124473 124603  131  2  2   53   17    89 0.770  -2.21
 5.05 Intr + 126505 126748  244  1  1   80   90   268 0.924  23.70

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  60274  60228   47  2  2  100   54    47 0.871  -0.13
S.002 Init -  61177  61093   85  1  1   79   77    47 0.830   3.68


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:75188120_75316047|GENSCAN_predicted_peptide_1|615_aa
MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRKQPVLSQAQEATLVPDDDYSPP
SKRPKANELPQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAEALGSTE
AKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLEKIIQVGNRIKFVIKSLRSSAV
MDGSTFFIGFSSNWKMQGPGQQQVKEDWNVRITKLRKQVEEIFNLKFAQALGLTEAVKVP
YPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLERIVRGSNKIKFVVKKPELVISYLPPG
MASKINTKALQSPKRPRSPGSNSKVPEIEVTVEGPNNNNPQTSAVRTPTQTNGSNVPFKP
RGREFSFEAWNAKITDLKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPE
GVPFRRPSTFGIPRLEKILRNKAKIKFIIKKPEMFETAIKESTSSKSPPRKINSSPNVNT
TASGVEDLNIIQMMIMKDSRKLKKLSLREQVNDLFSRKFGEAIGMGFPVKVPYRKITINP
GCVVVDGMPPGVSFKAPSYLEISSMRRILDSAEFIKFTVIRVFLKHSYTRIIHGCFPVTV
KLVDQSESEGPVIQX

>gi568815591r:75188120_75316047|GENSCAN_predicted_CDS_1|1845_bp
atggaactccacatcctggagcaccggctgcaagttgccagcgtcgccaaggagagtatc
ccgctgttcacctacggcctgatcaaacttgccttcctgtcctccaagaccagaaagcag
cctgtcctgtcccaggcccaggaagccaccctggtgcctgatgatgattattctccaccg
tctaagagaccaaaggccaatgagctaccgcagccaccagtcccggaacccgccaatgct
gggaagcggaaagtgagggagttcaacttcgagaaatggaatgctcgcatcactgatcta
cgtaaacaagttgaagaattgtttgaaaggaaatatgcggaagccttggggagcactgaa
gccaaggctgtaccgtaccaaaaatttgaggcacacccgaatgatctgtacgtggaagga
ctgccagaaaacattcctttccgaagtccctcatggtatggaatcccaaggctggaaaaa
atcattcaagtgggcaatcgaattaaatttgttattaaaagcttgaggagctccgcagtg
atggatggcagcacattcttcattggcttctccagtaattggaagatgcaaggacctggc
cagcaacaagtcaaagaagattggaatgtcagaattaccaagctacggaagcaagtggaa
gagatttttaatttgaaatttgctcaagctcttggactcaccgaggcagtaaaagtacca
tatcctgtgtttgaatcaaacccggagttcttgtatgtggaaggcttgccagaggggatt
cccttccgaagccctacctggtttggaattccacgacttgaaaggatcgtccgcgggagt
aataaaatcaagttcgttgttaaaaaacctgaactagttatttcctacttgcctcctggg
atggctagtaaaataaacactaaagctttgcagtcccccaaaagaccacgaagtcctggg
agtaattcaaaggttcctgaaattgaggtcaccgtggaaggccctaataacaacaatcct
caaacctcagctgttcgaaccccgacccagactaacggttctaacgttcccttcaagcca
cgagggagagagttttcctttgaggcctggaatgccaaaatcacggacctaaaacagaaa
gttgaaaatctcttcaatgagaaatgtggggaagctcttggccttaaacaagctgtgaag
gtgccgttcgcgttatttgagtctttcccggaagacttttatgtggaaggcttacctgag
ggtgtgccattccgaagaccatcgacttttggcattccgaggctggagaagatactcaga
aacaaagccaaaattaagttcatcattaaaaagcccgaaatgtttgagacggcgattaag
gagagcacctcctctaagagccctcccagaaaaataaattcatcacccaatgttaatact
actgcatcaggtgttgaagaccttaacatcattcagatgatgataatgaaagactctcga
aagttgaaaaagctgtcgctaagagaacaagtgaatgacctctttagtcggaaatttggt
gaagctattggtatgggttttcctgtgaaagttccctacaggaaaatcacaattaaccct
ggctgtgtggtggttgatggcatgcccccgggggtgtccttcaaagcccccagctacctg
gaaatcagctccatgagaaggatcttagactctgccgagtttatcaaattcacggtcatt
agagtcttcctgaaacacagctacacccgtattatccatggctgctttcctgtcacagtg
aagctggttgatcagagtgagtcagaaggccccgtgatacaagnn

>gi568815591r:75188120_75316047|GENSCAN_predicted_peptide_2|86_aa
MAQAQRLRQELQMLMTECLTWARNGSSKHPLSLAQKPEFLFHQLQSRDNAICPIAEQKAG
TANPVVQLLPQFPLVLQVPTVAVALL

>gi568815591r:75188120_75316047|GENSCAN_predicted_CDS_2|261_bp
atggctcaggctcagaggctcaggcaagagctacagatgctcatgaccgaatgtctcacc
tgggcccggaatggcagcagcaagcaccctctcagcctagcccagaagccagagttccta
tttcatcagttgcaaagcagagacaatgccatctgcccgatagcagagcaaaaggcaggt
accgccaaccctgtggtgcagctgctgccccagtttccccttgtgctccaggtccccact
gtggcagttgctcttctctga

>gi568815591r:75188120_75316047|GENSCAN_predicted_peptide_3|330_aa
MDSATPHDPAAPLLVTVLESVQKKTKDRTETRFGEMGQILGKIMMSHQPQPQEERSPQRS
TSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWV
AETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKIPSEPTILG
ASPKTLPPASRICIRPSNTPPPRNFHMSTVTPTLSYLANDMEEDDEAPKQNIFYFLYEET
RSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEENTGP
RGDVDFQQELYSNANGRHQEGGEEPFVQII

>gi568815591r:75188120_75316047|GENSCAN_predicted_CDS_3|993_bp
atggactcagccacaccccatgacccagcagctccgctcctggtgactgttctagagagt
gtccagaagaagaccaaggacagaacagagactaggtttggtgagatgggacagattttg
ggaaagatcatgatgagccatcaaccgcagccccaggaagagcggagcccccagcggagc
acctcagggtaccccctccaggaggtggtggatgatgaagtgttgggaccatcagcccct
ggggtagatcccagccccccacgtaggtcccttggctggaaaaggaagagggaatgtttg
gatgaatctgatgatgagccagagaaggagctcgcccctgagcctgaggagacctgggtg
gcggagacgctgtgtggcctcaagatgaaggcgaagcgacggcgagtgtcgctcgtgctc
cctgagtactacgaggccttcaacaggctgcttgaggatcctgtcattaaaagactcctg
gcctgggacaaagatctgagggtgtcggacaagatcccatcggagcccaccatcctggga
gcatcaccaaaaacccttcctccggcttctcggatttgcatccgaccttcgaatacccct
ccaccccgcaatttccacatgagcacagtcaccccaacactgagctatctggccaatgac
atggaggaggacgacgaggcccccaaacaaaacatcttctacttcctgtacgaggagacc
cgctctcatatacccttgctcagtgagctttggttccagttatgccgttacatgaacccg
agggccaggaagaactgctctcagatagccttgttccggaagtatcggttccacttcttt
tgttccatgcgctgcagggcttgggtttccctggaggagttggaagagaacaccggaccc
aggggagatgtggattttcagcaggaactttattccaatgctaatggcagacatcaggaa
ggaggagaggaaccatttgtgcagatcatctag

>gi568815591r:75188120_75316047|GENSCAN_predicted_peptide_4|166_aa
MLSVFKKEDTIIAKDFGNLRDTITEPAKAIKPIDRKSVHQICSGPVVLSLSTAVKKIVGN
SLDAGATNIDLKLKDYGMDLIEVSGNGCGVEEENFEGLSWDSTGVFDHDGKIIQKTPYPH
PRGTTVSVKQLFSTLPVRHKEFQRNIKKPVGEKYMRSVDTQACSCI

>gi568815591r:75188120_75316047|GENSCAN_predicted_CDS_4|501_bp
atgctttcagttttcaagaaagaagacaccattattgccaaagattttggtaatttgaga
gatacaattacagaacctgctaaggccatcaaacctattgatcggaagtcagtccatcag
atttgctctgggccggtggtactgagtctaagcactgcggtgaagaagatagtaggaaac
agtctggatgctggtgccactaatattgatctaaagcttaaggactatggaatggatctc
attgaagtttcaggcaatggatgtggggtagaagaagaaaacttcgaaggcttaagttgg
gactcgactggtgtttttgatcacgatgggaaaatcatccagaaaaccccctacccccac
cccagagggaccacagtcagcgtgaagcagttattttctacgctacctgtgcgccataag
gaatttcaaaggaatattaagaagccagttggtgagaagtacatgcggtctgtggacacc
caagcttgcagctgcatctga

>gi568815591r:75188120_75316047|GENSCAN_predicted_peptide_5|261_aa
MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKR
KRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPV
IKRLLAWDKDLRVSDKIPSEPTILGASPKTLPPASRICIRPSNTPPPRNFHMSTVTPTLS
YLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKY
RFHFFCSMRCRAWVSLEELEE

>gi568815591r:75188120_75316047|GENSCAN_predicted_CDS_5|783_bp
atgggacagattttgggaaagatcatgatgagccatcaaccgcagccccaggaagagcgg
agcccccagcggagcacctcagggtaccccctccaggaggtggtggatgatgaagtgttg
ggaccatcagcccctggggtagatcccagccccccacgtaggtcccttggctggaaaagg
aagagggaatgtttggatgaatctgatgatgagccagagaaggagctcgcccctgagcct
gaggagacctgggtggcggagacgctgtgtggcctcaagatgaaggcgaagcgacggcga
gtgtcgctcgtgctccctgagtactacgaggccttcaacaggctgcttgaggatcctgtc
attaaaagactcctggcctgggacaaagatctgagggtgtcggacaagatcccatcggag
cccaccatcctgggagcatcaccaaaaacccttcctccggcttctcggatttgcatccga
ccttcgaatacccctccaccccgcaatttccacatgagcacagtcaccccaacactgagc
tatctggccaatgacatggaggaggacgacgaggcccccaaacaaaacatcttctacttc
ctgtacgaggagacccgctctcatatacccttgctcagtgagctttggttccagttatgc
cgttacatgaacccgagggccaggaagaactgctctcagatagccttgttccggaagtat
cggttccacttcttttgttccatgcgctgcagggcttgggtttccctggaggagttggaa
gag