Result of FASTA (omim) for pF1KE0221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0221, 96 aa
  1>>>pF1KE0221 96 - 96 aa - 96 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4600+/-0.000275; mu= 12.9359+/- 0.017
 mean_var=50.2763+/- 9.905, 0's: 0 Z-trim(118.7): 53  B-trim: 0 in 0/54
 Lambda= 0.180881
 statistics sampled from 31784 (31837) to 31784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.373), width:  16
 Scan time:  3.600

The best scores are:                                      opt bits E(85289)
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre (  96)  670 181.6 1.7e-46
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  193 57.1 5.2e-09
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  190 56.3   9e-09
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik (  92)  188 55.8 1.2e-08
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  185 55.0 2.1e-08
NP_066286 (OMIM: 601395,609423) C-C motif chemokin (  93)  182 54.2 3.6e-08
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- (  93)  182 54.2 3.6e-08
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  179 53.5 6.6e-08
NP_002974 (OMIM: 182283,609423) C-C motif chemokin (  92)  178 53.2 7.4e-08
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is (  93)  171 51.4 2.7e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  169 50.8 3.9e-07
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  165 49.8 8.3e-07
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109)  164 49.6 1.1e-06
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr (  94)  162 49.0 1.4e-06
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c (  94)  162 49.0 1.4e-06
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148)  162 49.1   2e-06
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  156 47.5 4.9e-06
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119)  156 47.5 4.9e-06
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119)  156 47.5 4.9e-06
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- (  87)  146 44.8 2.3e-05
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  144 44.3 3.4e-05
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113)  142 43.8 5.9e-05
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso (  91)  141 43.5 5.9e-05
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120)  136 42.3 0.00018
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137)  136 42.3  0.0002
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  133 41.4 0.00026
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  133 41.4 0.00026
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120)  129 40.5 0.00065
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120)  129 40.5 0.00065
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  122 38.7  0.0025
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  122 38.7  0.0027
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103)  116 37.0   0.006
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  114 36.5  0.0083
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- (  96)  113 36.2  0.0098


>>NP_002972 (OMIM: 182281) C-C motif chemokine 1 precurs  (96 aa)
 initn: 670 init1: 670 opt: 670  Z-score: 955.6  bits: 181.6 E(85289): 1.7e-46
Smith-Waterman score: 670; 100.0% identity (100.0% similar) in 96 aa overlap (1-96:1-96)

               10        20        30        40        50        60
pF1KE0 MQIITTALVCLLLAGMWPEDVDSKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSICSNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQIITTALVCLLLAGMWPEDVDSKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSICSNE
               10        20        30        40        50        60

               70        80        90      
pF1KE0 GLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
       ::::::::::::::::::::::::::::::::::::
NP_002 GLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
               70        80        90      

>>NP_005399 (OMIM: 601391) C-C motif chemokine 13 precur  (98 aa)
 initn: 203 init1: 157 opt: 193  Z-score: 282.8  bits: 57.1 E(85289): 5.2e-09
Smith-Waterman score: 193; 37.5% identity (67.0% similar) in 88 aa overlap (4-88:3-89)

               10          20         30        40        50       
pF1KE0 MQIITTALVCLLL--AGMWPEDV-DSKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSIC
          ....:.::::  :.. :. . .  ...:: : :::.:. ..: :. .  :  :.: :
NP_005  MKVSAVLLCLLLMTAAFNPQGLAQPDALNVP-STCCFTFSSKKISLQRLKSYVITTSRC
                10        20        30         40        50        

        60        70        80        90       
pF1KE0 SNEGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK 
        ....::. : ::: ::     ::: . : :         
NP_005 PQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
       60        70        80        90        

>>NP_005614 (OMIM: 602283) C-C motif chemokine 8 precurs  (99 aa)
 initn: 157 init1:  78 opt: 190  Z-score: 278.5  bits: 56.3 E(85289): 9e-09
Smith-Waterman score: 190; 37.1% identity (67.4% similar) in 89 aa overlap (4-88:3-90)

               10          20         30        40        50       
pF1KE0 MQIITTALVCLLL--AGMWPEDV-DSKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSI-
          ...::.::::  : . :. . .  :...:.. :::.  ...::.. .  :   ..: 
NP_005  MKVSAALLCLLLMAATFSPQGLAQPDSVSIPIT-CCFNVINRKIPIQRLESYTRITNIQ
                10        20        30         40        50        

         60        70        80        90       
pF1KE0 CSNEGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK 
       : .:..::: :::::.::     ::.   : :         
NP_005 CPKEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
       60        70        80        90         

>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr  (92 aa)
 initn: 175 init1: 175 opt: 188  Z-score: 276.1  bits: 55.8 E(85289): 1.2e-08
Smith-Waterman score: 188; 34.1% identity (69.4% similar) in 85 aa overlap (1-84:1-85)

               10        20         30        40        50         
pF1KE0 MQIITTALVCLLLAGMWPEDVDSKSMQV-PFSRCCFSFAEQEIPLRAILCYRNTSSICSN
       :.. .:.:  :.:.. .   . :  :   : . ::::.. ...:   .. : .:::.::.
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90      
pF1KE0 EGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
        ...:. ::::..::  . .:::..            
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN     
               70        80        90       

>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs  (92 aa)
 initn: 167 init1: 167 opt: 185  Z-score: 271.9  bits: 55.0 E(85289): 2.1e-08
Smith-Waterman score: 185; 32.9% identity (69.4% similar) in 85 aa overlap (1-84:1-85)

               10        20         30        40        50         
pF1KE0 MQIITTALVCLLLAGMWPEDVDSKSMQV-PFSRCCFSFAEQEIPLRAILCYRNTSSICSN
       :.. .:.:  :.:.. .   . :  :   : . ::::.. ...:   .. : .:::.::.
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
               10        20        30        40        50        60

      60        70        80        90      
pF1KE0 EGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
        ...:. ::.:..::  . .:::..            
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN     
               70        80        90       

>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3-  (93 aa)
 initn: 198 init1: 164 opt: 182  Z-score: 267.6  bits: 54.2 E(85289): 3.6e-08
Smith-Waterman score: 182; 37.6% identity (64.7% similar) in 85 aa overlap (1-84:1-85)

               10        20        30         40        50         
pF1KE0 MQIITTALVCLLLAGMWPEDVDSKSMQVPF-SRCCFSFAEQEIPLRAILCYRNTSSICSN
       ::. :.::. :: .    ..: :  . .   . ::::.. ..::   :  : .::: ::.
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

      60        70        80        90      
pF1KE0 EGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
        ..::  :::...::  .  :::..            
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA    
               70        80        90       

>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like  (93 aa)
 initn: 198 init1: 164 opt: 182  Z-score: 267.6  bits: 54.2 E(85289): 3.6e-08
Smith-Waterman score: 182; 37.6% identity (64.7% similar) in 85 aa overlap (1-84:1-85)

               10        20        30         40        50         
pF1KE0 MQIITTALVCLLLAGMWPEDVDSKSMQVPF-SRCCFSFAEQEIPLRAILCYRNTSSICSN
       ::. :.::. :: .    ..: :  . .   . ::::.. ..::   :  : .::: ::.
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30        40        50        60

      60        70        80        90      
pF1KE0 EGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
        ..::  :::...::  .  :::..            
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA    
               70        80        90       

>>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs  (99 aa)
 initn: 137 init1: 107 opt: 179  Z-score: 263.0  bits: 53.5 E(85289): 6.6e-08
Smith-Waterman score: 179; 39.1% identity (59.8% similar) in 87 aa overlap (5-88:4-90)

               10          20        30        40        50        
pF1KE0 MQIITTALVCLLL--AGMWPEDVDSKSMQVPFSRCCFSFAEQEIPLRAILCYR-NTSSIC
           ..::.::::  :.. :. . .       . ::. : ...:: . .  :: .::: :
NP_006  MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHC
                10        20        30        40        50         

        60        70        80        90       
pF1KE0 SNEGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK 
         :..::: :  :: ::  :  :::   : :         
NP_006 PREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
      60        70        80        90         

>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3   (92 aa)
 initn: 186 init1: 177 opt: 178  Z-score: 262.0  bits: 53.2 E(85289): 7.4e-08
Smith-Waterman score: 178; 37.6% identity (67.1% similar) in 85 aa overlap (1-84:1-84)

               10        20         30        40        50         
pF1KE0 MQIITTALVCLLLAGMWPEDVD-SKSMQVPFSRCCFSFAEQEIPLRAILCYRNTSSICSN
       ::. :.::. :: .    .. . : . ..: . ::::.. ..::   :  : .::: ::.
NP_002 MQVSTAALAVLLCTMALCNQFSASLAADTP-TACCFSYTSRQIPQNFIADYFETSSQCSK
               10        20        30         40        50         

      60        70        80        90      
pF1KE0 EGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
        :.::  ::....::  .  :::..            
NP_002 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA    
      60        70        80        90      

>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor  (93 aa)
 initn: 167 init1: 159 opt: 171  Z-score: 252.1  bits: 51.4 E(85289): 2.7e-07
Smith-Waterman score: 171; 31.9% identity (62.6% similar) in 91 aa overlap (1-89:1-91)

               10        20        30          40        50        
pF1KE0 MQIITTALVCLLLAGMWPEDVDSKSMQVPF--SRCCFSFAEQEIPLRAILCYRNTSSICS
       :.: ..:.  .::  .       .: . :.  :.:::...  .:: . :. : .:.: ::
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
               10        20        30        40        50        60

       60        70        80        90      
pF1KE0 NEGLIFKLKRGKEACALDTVGWVQRHRKMLRHCPSKRK
       . :..:  :::. .:.  .  ::: . : ..       
NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN     
               70        80        90        




96 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 20:48:19 2016 done: Thu Nov  3 20:48:19 2016
 Total Scan time:  3.600 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
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