FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0187, 244 aa
  1>>>pF1KE0187 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3570+/-0.000594; mu= 15.2564+/- 0.036
 mean_var=66.7670+/-13.522, 0's: 0 Z-trim(112.4): 10  B-trim: 136 in 1/52
 Lambda= 0.156962
 statistics sampled from 13142 (13150) to 13142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.404), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS1781.1 YIPF4 gene_id:84272|Hs108|chr2          ( 244) 1614 373.4 7.8e-104


>>CCDS1781.1 YIPF4 gene_id:84272|Hs108|chr2               (244 aa)
 initn: 1614 init1: 1614 opt: 1614  Z-score: 1977.6  bits: 373.4 E(32554): 7.8e-104
Smith-Waterman score: 1614; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE0 MQPPGPPPAYAPTNGDFTFVSSADAEDLSGSIASPDVKLNLGGDFIKESTATTFLRQRGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MQPPGPPPAYAPTNGDFTFVSSADAEDLSGSIASPDVKLNLGGDFIKESTATTFLRQRGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GWLLEVEDDDPEDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GWLLEVEDDDPEDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VVLFFSMISLYGQFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VVLFFSMISLYGQFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IAPVLLVVGSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLIYPIFLLYIYFLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 IAPVLLVVGSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLIYPIFLLYIYFLSL
              190       200       210       220       230       240

           
pF1KE0 YTGV
       ::::
CCDS17 YTGV
           




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:10:46 2016 done: Thu Nov  3 22:10:47 2016
 Total Scan time:  2.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]