Result of FASTA (ccds) for pF1KE0186
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0186, 220 aa
  1>>>pF1KE0186 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2934+/-0.000818; mu= 13.6156+/- 0.049
 mean_var=62.5819+/-12.459, 0's: 0 Z-trim(106.8): 12  B-trim: 0 in 0/49
 Lambda= 0.162125
 statistics sampled from 9217 (9221) to 9217 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS4057.1 ATG10 gene_id:83734|Hs108|chr5          ( 220) 1540 368.6 1.8e-102


>>CCDS4057.1 ATG10 gene_id:83734|Hs108|chr5               (220 aa)
 initn: 1540 init1: 1540 opt: 1540  Z-score: 1953.2  bits: 368.6 E(32554): 1.8e-102
Smith-Waterman score: 1540; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE0 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
              130       140       150       160       170       180

              190       200       210       220
pF1KE0 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
       ::::::::::::::::::::::::::::::::::::::::
CCDS40 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
              190       200       210       220




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:11:56 2016 done: Thu Nov  3 22:11:57 2016
 Total Scan time:  2.030 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com