Result of FASTA (omim) for pF1KE0171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0171, 222 aa
  1>>>pF1KE0171 222 - 222 aa - 222 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2354+/-0.000333; mu= 13.8991+/- 0.021
 mean_var=61.6050+/-12.265, 0's: 0 Z-trim(115.0): 16  B-trim: 55 in 1/50
 Lambda= 0.163405
 statistics sampled from 25155 (25167) to 25155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.295), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(85289)
NP_000627 (OMIM: 147460,612634) superoxide dismuta ( 222) 1536 370.3 1.4e-102
NP_001019636 (OMIM: 147460,612634) superoxide dism ( 222) 1536 370.3 1.4e-102
NP_001309746 (OMIM: 147460,612634) superoxide dism ( 176) 1223 296.5 1.8e-80
NP_001309749 (OMIM: 147460,612634) superoxide dism ( 176) 1223 296.5 1.8e-80
NP_001309748 (OMIM: 147460,612634) superoxide dism ( 176) 1223 296.5 1.8e-80
NP_001309744 (OMIM: 147460,612634) superoxide dism ( 162)  785 193.2 2.1e-49
NP_001019637 (OMIM: 147460,612634) superoxide dism ( 183)  765 188.5 6.1e-48
NP_001309743 (OMIM: 147460,612634) superoxide dism ( 183)  765 188.5 6.1e-48
NP_001309745 (OMIM: 147460,612634) superoxide dism ( 140)  513 129.1 3.7e-30


>>NP_000627 (OMIM: 147460,612634) superoxide dismutase [  (222 aa)
 initn: 1536 init1: 1536 opt: 1536  Z-score: 1962.7  bits: 370.3 E(85289): 1.4e-102
Smith-Waterman score: 1536; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
              130       140       150       160       170       180

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
NP_000 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
              190       200       210       220  

>>NP_001019636 (OMIM: 147460,612634) superoxide dismutas  (222 aa)
 initn: 1536 init1: 1536 opt: 1536  Z-score: 1962.7  bits: 370.3 E(85289): 1.4e-102
Smith-Waterman score: 1536; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
              130       140       150       160       170       180

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
              190       200       210       220  

>>NP_001309746 (OMIM: 147460,612634) superoxide dismutas  (176 aa)
 initn: 1223 init1: 1223 opt: 1223  Z-score: 1565.5  bits: 296.5 E(85289): 1.8e-80
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)

         20        30        40        50        60        70      
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                     ::::::::::::::::::::::::::::::
NP_001                               MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                             10        20        30

         80        90       100       110       120       130      
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
              100       110       120       130       140       150

        200       210       220  
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::
NP_001 RPDYLKAIWNVINWENVTERYMACKK
              160       170      

>>NP_001309749 (OMIM: 147460,612634) superoxide dismutas  (176 aa)
 initn: 1223 init1: 1223 opt: 1223  Z-score: 1565.5  bits: 296.5 E(85289): 1.8e-80
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)

         20        30        40        50        60        70      
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                     ::::::::::::::::::::::::::::::
NP_001                               MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                             10        20        30

         80        90       100       110       120       130      
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
              100       110       120       130       140       150

        200       210       220  
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::
NP_001 RPDYLKAIWNVINWENVTERYMACKK
              160       170      

>>NP_001309748 (OMIM: 147460,612634) superoxide dismutas  (176 aa)
 initn: 1223 init1: 1223 opt: 1223  Z-score: 1565.5  bits: 296.5 E(85289): 1.8e-80
Smith-Waterman score: 1223; 100.0% identity (100.0% similar) in 176 aa overlap (47-222:1-176)

         20        30        40        50        60        70      
pF1KE0 LGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                     ::::::::::::::::::::::::::::::
NP_001                               MQLHHSKHHAAYVNNLNVTEEKYQEALAKG
                                             10        20        30

         80        90       100       110       120       130      
pF1KE0 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLT
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNV
              100       110       120       130       140       150

        200       210       220  
pF1KE0 RPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::
NP_001 RPDYLKAIWNVINWENVTERYMACKK
              160       170      

>>NP_001309744 (OMIM: 147460,612634) superoxide dismutas  (162 aa)
 initn: 785 init1: 785 opt: 785  Z-score: 1008.0  bits: 193.2 E(85289): 2.1e-49
Smith-Waterman score: 990; 73.0% identity (73.0% similar) in 222 aa overlap (1-222:1-162)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
NP_001 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKG-----
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
                                                              :::::
NP_001 -------------------------------------------------------LIPLL
                                                                120

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
              130       140       150       160  

>>NP_001019637 (OMIM: 147460,612634) superoxide dismutas  (183 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 981.7  bits: 188.5 E(85289): 6.1e-48
Smith-Waterman score: 1173; 82.4% identity (82.4% similar) in 222 aa overlap (1-222:1-183)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::                                       :::::
NP_001 NLNVTEEKYQEALAKG---------------------------------------ELLEA
               70                                               80 

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
              90       100       110       120       130       140 

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
             150       160       170       180   

>>NP_001309743 (OMIM: 147460,612634) superoxide dismutas  (183 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 981.7  bits: 188.5 E(85289): 6.1e-48
Smith-Waterman score: 1173; 82.4% identity (82.4% similar) in 222 aa overlap (1-222:1-183)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::                                       :::::
NP_001 NLNVTEEKYQEALAKG---------------------------------------ELLEA
               70                                               80 

              130       140       150       160       170       180
pF1KE0 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
              90       100       110       120       130       140 

              190       200       210       220  
pF1KE0 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
             150       160       170       180   

>>NP_001309745 (OMIM: 147460,612634) superoxide dismutas  (140 aa)
 initn: 513 init1: 513 opt: 513  Z-score: 662.4  bits: 129.1 E(85289): 3.7e-30
Smith-Waterman score: 513; 95.1% identity (96.3% similar) in 81 aa overlap (1-81:1-81)

               10        20        30        40        50        60
pF1KE0 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
       ::::::::::::::::   :.                                       
NP_001 NLNVTEEKYQEALAKGRFQAERREAVPGRGDPREPGPIRTGLSVEENSLRICTGSEFSRH
               70        80        90       100       110       120




222 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:00:00 2016 done: Thu Nov  3 23:00:02 2016
 Total Scan time:  5.500 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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