FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0049, 727 aa
  1>>>pF1KE0049 727 - 727 aa - 727 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1271+/-0.00114; mu= 17.1834+/- 0.069
 mean_var=111.6403+/-21.786, 0's: 0 Z-trim(105.1): 49  B-trim: 0 in 0/54
 Lambda= 0.121385
 statistics sampled from 8230 (8258) to 8230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.254), width:  16
 Scan time:  3.790

The best scores are:                                      opt bits E(32554)
CCDS1853.1 MTIF2 gene_id:4528|Hs108|chr2           ( 727) 4771 847.2       0


>>CCDS1853.1 MTIF2 gene_id:4528|Hs108|chr2                (727 aa)
 initn: 4771 init1: 4771 opt: 4771  Z-score: 4521.7  bits: 847.2 E(32554):    0
Smith-Waterman score: 4771; 100.0% identity (100.0% similar) in 727 aa overlap (1-727:1-727)

               10        20        30        40        50        60
pF1KE0 MNQKLLKLENLLRFHTIYRQLHSLCQRRALRQWRHGFSSAYPVWTAQLCAWPWPTDVLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MNQKLLKLENLLRFHTIYRQLHSLCQRRALRQWRHGFSSAYPVWTAQLCAWPWPTDVLTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AALSQYRLLVTKKEEGPWKSQLSSTKSKKVVEVWIGMTIEELARAMEKNTDYVYEALLNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 AALSQYRLLVTKKEEGPWKSQLSSTKSKKVVEVWIGMTIEELARAMEKNTDYVYEALLNT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DIDIDSLEADSHLDEVWIKEVITKAGMKLKWSKLKQDKVRKNKDAVRRPQADPALLTPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DIDIDSLEADSHLDEVWIKEVITKAGMKLKWSKLKQDKVRKNKDAVRRPQADPALLTPRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PVVTIMGHVDHGKTTLLDKFRKTQVAAVETGGITQHIGAFLVSLPSGEKITFLDTPGHAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PVVTIMGHVDHGKTTLLDKFRKTQVAAVETGGITQHIGAFLVSLPSGEKITFLDTPGHAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPIILAVNKCDKAEADPEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 FSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPIILAVNKCDKAEADPEKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 KKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ESFTDKGRGLVTTAIIQRGTLRKGSVLVAGKCWAKVRLMFDENGKTIDEAYPSMPVGITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ESFTDKGRGLVTTAIIQRGTLRKGSVLVAGKCWAKVRLMFDENGKTIDEAYPSMPVGITG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 WRDLPSAGEEILEVESEPRAREVVDWRKYEQEQEKGQEDLKIIEEKRKEHKEAHQKAREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 WRDLPSAGEEILEVESEPRAREVVDWRKYEQEQEKGQEDLKIIEEKRKEHKEAHQKAREK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 YGHLLWKKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIKGDVDGSVEAILNIIDTYDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 YGHLLWKKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIKGDVDGSVEAILNIIDTYDA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 SHECELELVHFGVGDVSANDVNLAETFDGVIYGFNVNAGNVIQQSAAKKGVKIKLHKIIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SHECELELVHFGVGDVSANDVNLAETFDGVIYGFNVNAGNVIQQSAAKKGVKIKLHKIIY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 RLVEDLQEELSSRLPCAVEEHPVGEASILATFSVTEGKKKVPVAGCRVQKGQLEKQKKFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 RLVEDLQEELSSRLPCAVEEHPVGEASILATFSVTEGKKKVPVAGCRVQKGQLEKQKKFK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 LTRNGHVIWKGSLTSLKHHKDDISIVKTGMDCGLSLDEDNMEFQVGDRIVCYEEKQIQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LTRNGHVIWKGSLTSLKHHKDDISIVKTGMDCGLSLDEDNMEFQVGDRIVCYEEKQIQAK
              670       680       690       700       710       720

              
pF1KE0 TSWDPGF
       :::::::
CCDS18 TSWDPGF
              




727 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:12:11 2016 done: Sat Nov  5 22:12:12 2016
 Total Scan time:  3.790 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]