Result of FASTA (ccds) for pF1KB8685
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8685, 717 aa
  1>>>pF1KB8685 717 - 717 aa - 717 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5102+/-0.00078; mu= 10.9514+/- 0.048
 mean_var=138.2350+/-26.665, 0's: 0 Z-trim(113.1): 10  B-trim: 0 in 0/51
 Lambda= 0.109085
 statistics sampled from 13785 (13795) to 13785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.424), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS12675.1 RSPH6A gene_id:81492|Hs108|chr19       ( 717) 4891 781.3       0
CCDS34521.1 RSPH4A gene_id:345895|Hs108|chr6       ( 716) 1978 322.8 1.1e-87
CCDS55051.1 RSPH4A gene_id:345895|Hs108|chr6       ( 600) 1245 207.4   5e-53


>>CCDS12675.1 RSPH6A gene_id:81492|Hs108|chr19            (717 aa)
 initn: 4891 init1: 4891 opt: 4891  Z-score: 4165.3  bits: 781.3 E(32554):    0
Smith-Waterman score: 4891; 100.0% identity (100.0% similar) in 717 aa overlap (1-717:1-717)

               10        20        30        40        50        60
pF1KB8 MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALAADPEERQQIPPDAQRNAPGWSQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALAADPEERQQIPPDAQRNAPGWSQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFPSEFQPQPYSDESRMQVAELTTSLML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFPSEFQPQPYSDESRMQVAELTTSLML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTDQFSEGAQHGPYIRDDPALQFLPSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTDQFSEGAQHGPYIRDDPALQFLPSEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDLSLYEHLVNLLTKILNQRPEDPLSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDLSLYEHLVNLLTKILNQRPEDPLSVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQKALFTRSGGGTEGEQEMEEEVGETP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQKALFTRSGGGTEGEQEMEEEVGETP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVAEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 EFREGEEEAEEEEVEEMTEGGEVMEAHGEEEGEEDEEKAVDIVPKSVWKPPPVIPKEESR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EFREGEEEAEEEEVEEMTEGGEVMEAHGEEEGEEDEEKAVDIVPKSVWKPPPVIPKEESR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 SGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 LRAQIARISAATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVDSMAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRAQIARISAATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVDSMAN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 WVHHTQHILPQGRCTWVNPLQKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WVHHTQHILPQGRCTWVNPLQKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 IMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGAYAYASGKKFENIYIGWGHKYSPESFNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGAYAYASGKKFENIYIGWGHKYSPESFNPA
              610       620       630       640       650       660

              670       680       690       700       710       
pF1KB8 LPAPIQQEYPSGPEIMEMSDPTVEEEQALKAAQEQALGATEEEEEGEEEEEGEETDD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPAPIQQEYPSGPEIMEMSDPTVEEEQALKAAQEQALGATEEEEEGEEEEEGEETDD
              670       680       690       700       710       

>>CCDS34521.1 RSPH4A gene_id:345895|Hs108|chr6            (716 aa)
 initn: 1905 init1: 914 opt: 1978  Z-score: 1687.7  bits: 322.8 E(32554): 1.1e-87
Smith-Waterman score: 2305; 51.5% identity (76.5% similar) in 714 aa overlap (8-716:42-716)

                                      10        20        30       
pF1KB8                        MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALA
                                     : .  : :   : :..:.    ...:..  
CCDS34 ENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSPQSRAKTPL
              20        30        40        50        60        70 

        40          50        60        70        80        90     
pF1KB8 ADPE--ERQQIPPDAQRNAPGWSQRGSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFP
       . :   : ..  : . :. :. :       ...:  :   :..  :  ..  : ..: .:
CCDS34 GGPAGPETSSPAPVSPRE-PSSSPSPLAPARQDLAAPP--QSD--RTTSV-IPEAGTPYP
              80         90       100         110          120     

         100       110       120       130       140       150     
pF1KB8 SEFQPQPYSDESRMQVAELTTSLMLQRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTD
       . .. .  . ::  . .  . .  .:. :: .  :  . : ....   . : .:...: .
CCDS34 DPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKEL-RFDVFQEE
         130       140       150       160       170        180    

         160       170       180       190       200       210     
pF1KB8 QFSEGAQHGPYIRDDPALQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDL
       .     ... :  ..::    :.       ...:  :  ::...::::::::.:: :  .
CCDS34 D-----SNSDYDLQQPA----PG-------GSEVA-PSMLEITIQNAKAYLLKTSSNSGF
               190                  200        210       220       

         220       230       240       250       260       270     
pF1KB8 SLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQ
       .::.:: :.::::::.:::. ....:.... ..   :  :.:.:... :. :::..::::
CCDS34 NLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQ
       230       240       250       260       270       280       

         280        290       300       310       320       330    
pF1KB8 KALFTRSGGGTEG-EQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLV
       :::: .  :  :: .::.:.:..:. .::.::.:::::::::::..::..:::::.:::.
CCDS34 KALFLQ--GHLEGVDQELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLT
       290         300       310       320       330       340     

          340       350       360         370       380       390  
pF1KB8 EQQPIHTCRFWGKILGIKRSYLVAEVEFREGE--EEAEEEEVEEMTEGGEVMEAHGEEEG
       . .::. :::::::::.. .:.::::::::::  ::.:::.: :  ..::  :::   : 
CCDS34 DTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGES-EAH---ED
         350       360       370       380       390           400 

            400       410       420       430       440       450  
pF1KB8 EEDEEKAVDIVPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNA
       ::::      .::: .: : .:::::::.:::::.:::::::: ::..:: : ::::: :
CCDS34 EEDE------LPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIA
                   410       420       430       440       450     

            460       470       480       490       500       510  
pF1KB8 RKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEE
       ::::::::: ::.:..:::::::::.::::::::::::.:.:::::::::.::::.::::
CCDS34 RKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEE
         460       470       480       490       500       510     

            520       530       540       550       560       570  
pF1KB8 GGAGRDSYEENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEE
       . .::.:.::::::::: :..::.:..:::::.:::: ::::.: : .::.::::.  ::
CCDS34 AEGGRNSFEENPDFEGIQVIDLVESLSNWVHHVQHILSQGRCNWFNSIQKNEEEEE--EE
         520       530       540       550       560       570     

            580       590       600       610       620       630  
pF1KB8 EEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGA
       .:. :.. . .::::: :::::.::: ::... ::::::: .: :::..::..:::::::
CCDS34 DEEKDDS-DYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGA
           580        590       600       610       620       630  

            640       650       660       670       680       690  
pF1KB8 YAYASGKKFENIYIGWGHKYSPESFNPALPAPIQQEYPSGPEIMEMSDPTVEEEQALKAA
       ::...::::::.::::::::::....: .: :. ::::::::: ::.::.::::::..::
CCDS34 YAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAA
            640       650       660       670       680       690  

            700       710       
pF1KB8 QEQALGATEEEEEGEEEEEGEETDD
       :: .: :.:.::  :.:.: .. : 
CCDS34 QEAVLLAAENEESEEDEDEEDDYD 
            700       710       

>>CCDS55051.1 RSPH4A gene_id:345895|Hs108|chr6            (600 aa)
 initn: 1504 init1: 810 opt: 1245  Z-score: 1065.4  bits: 207.4 E(32554): 5e-53
Smith-Waterman score: 1572; 48.5% identity (73.2% similar) in 549 aa overlap (8-551:42-554)

                                      10        20        30       
pF1KB8                        MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALA
                                     : .  : :   : :..:.    ...:..  
CCDS55 ENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSPQSRAKTPL
              20        30        40        50        60        70 

        40          50        60        70        80        90     
pF1KB8 ADPE--ERQQIPPDAQRNAPGWSQRGSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFP
       . :   : ..  : . :. :. :       ...:  :   :..  :  ..  : ..: .:
CCDS55 GGPAGPETSSPAPVSPRE-PSSSPSPLAPARQDLAAPP--QSD--RTTSV-IPEAGTPYP
              80         90       100         110          120     

         100       110       120       130       140       150     
pF1KB8 SEFQPQPYSDESRMQVAELTTSLMLQRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTD
       . .. .  . ::  . .  . .  .:. :: .  :  . : ....   . : .:...:  
CCDS55 DPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKEL-RFDVFQ--
         130       140       150       160       170        180    

         160       170       180       190       200       210     
pF1KB8 QFSEGAQHGPYIRDDPALQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDL
          :  ... :  ..::    :.       ...:  :  ::...::::::::.:: :  .
CCDS55 ---EEDSNSDYDLQQPA----PG-------GSEVA-PSMLEITIQNAKAYLLKTSSNSGF
               190                  200        210       220       

         220       230       240       250       260       270     
pF1KB8 SLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQ
       .::.:: :.::::::.:::. ....:.... ..   :  :.:.:... :. :::..::::
CCDS55 NLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQ
       230       240       250       260       270       280       

         280        290       300       310       320       330    
pF1KB8 KALFTRSGGGTEG-EQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLV
       :::: .  :  :: .::.:.:..:. .::.::.:::::::::::..::..:::::.:::.
CCDS55 KALFLQ--GHLEGVDQELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLT
       290         300       310       320       330       340     

          340       350       360         370       380       390  
pF1KB8 EQQPIHTCRFWGKILGIKRSYLVAEVEFREGE--EEAEEEEVEEMTEGGEVMEAHGEEEG
       . .::. :::::::::.. .:.::::::::::  ::.:::.: :  ..::  :::   : 
CCDS55 DTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGES-EAH---ED
         350       360       370       380       390           400 

            400       410       420       430       440       450  
pF1KB8 EEDEEKAVDIVPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNA
       ::::      .::: .: : .:::::::.:::::.:::::::: ::..:: : ::::: :
CCDS55 EEDE------LPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIA
                   410       420       430       440       450     

            460       470       480       490       500       510  
pF1KB8 RKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEE
       ::::::::: ::.:..:::::::::.::::::::::::.:.:::::::::.::::.::::
CCDS55 RKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEE
         460       470       480       490       500       510     

            520       530       540       550       560       570  
pF1KB8 GGAGRDSYEENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEE
       . .::.:.::::::::: :..::.:..:::::.:::: :                     
CCDS55 AEGGRNSFEENPDFEGIQVIDLVESLSNWVHHVQHILSQRFRIYPPGQHGYPQISFHNML
         520       530       540       550       560       570     

            580       590       600       610       620       630  
pF1KB8 EEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGA
                                                                   
CCDS55 LQSFNPTFGLEHMPSPMAKSLKIST                                   
         580       590       600                                   




717 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:10:01 2016 done: Sat Nov  5 22:10:01 2016
 Total Scan time:  3.290 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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