Result of FASTA (ccds) for pF1KE0056
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0056, 472 aa
  1>>>pF1KE0056 472 - 472 aa - 472 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4767+/-0.000791; mu= 13.2442+/- 0.048
 mean_var=133.0932+/-27.761, 0's: 0 Z-trim(112.3): 175  B-trim: 112 in 1/52
 Lambda= 0.111172
 statistics sampled from 12853 (13083) to 12853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.402), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS12429.1 WDR88 gene_id:126248|Hs108|chr19       ( 472) 3302 541.0  1e-153
CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1          ( 357)  436 81.2   2e-15
CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2          ( 415)  392 74.2 2.9e-13
CCDS31869.1 POC1B gene_id:282809|Hs108|chr12       ( 478)  344 66.6 6.7e-11


>>CCDS12429.1 WDR88 gene_id:126248|Hs108|chr19            (472 aa)
 initn: 3302 init1: 3302 opt: 3302  Z-score: 2873.3  bits: 541.0 E(32554): 1e-153
Smith-Waterman score: 3302; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)

               10        20        30        40        50        60
pF1KE0 MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LALDREPPPHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LALDREPPPHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 DSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 NVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 GHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDR
              370       380       390       400       410       420

              430       440       450       460       470  
pF1KE0 PFSIFKSDTSSEMFTQCVFCRIDTRGLPADTSSSSSSSERENSPPPRGSKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PFSIFKSDTSSEMFTQCVFCRIDTRGLPADTSSSSSSSERENSPPPRGSKDD
              430       440       450       460       470  

>>CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1               (357 aa)
 initn: 302 init1: 166 opt: 436  Z-score: 390.6  bits: 81.2 E(32554): 2e-15
Smith-Waterman score: 436; 26.3% identity (59.7% similar) in 308 aa overlap (92-393:56-357)

              70        80        90       100       110       120 
pF1KE0 ALDREPPPHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSGS
                                     . :. .:::::  :  :.:  . . : :..
CCDS34 LGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAG
          30        40        50        60        70        80     

             130       140       150       160       170       180 
pF1KE0 YDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLLW
       .:  . ::.           .  .. :.:   . :.: ...:: :::: .:: :::. . 
CCDS34 FDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVK
          90       100       110       120       130       140     

              190        200       210       220       230         
pF1KE0 KVR-YDTFIVSCKFSPDG-KYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFD
       ... . .:. ::  .  : . : .: : :  . . : .. ........  : .. .  :.
CCDS34 RLKGHTSFVNSCYPARRGPQLVCTGSD-DGTVKLWDIRKKAAIQTFQN--TYQVLAVTFN
         150       160       170        180       190         200  

     240       250       260       270       280       290         
pF1KE0 PDSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKI
         :... : ..:  ::.::.  :  :    ..:......  ..  : .: ... :.....
CCDS34 DTSDQIISGGIDNDIKVWDLR-QNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRV
            210       220        230       240       250       260 

     300       310       320           330       340       350     
pF1KE0 WNVHTGEFRNCGACVTLMQGH----EGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYR
       :.:.   :     :: ..::.    : ..  : .. :.: . .:. :: : .::..    
CCDS34 WDVRP--FAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI
               270       280       290       300       310         

         360       370       380       390       400       410     
pF1KE0 KLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQC
         .: ::   . .::.  ..  :.:::.:. . . .:.                      
CCDS34 LYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ                      
     320       330       340       350                             

         420       430       440       450       460       470  
pF1KE0 ERCDRPFSIFKSDTSSEMFTQCVFCRIDTRGLPADTSSSSSSSERENSPPPRGSKDD

>>CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2               (415 aa)
 initn: 359 init1: 175 opt: 392  Z-score: 351.6  bits: 74.2 E(32554): 2.9e-13
Smith-Waterman score: 511; 26.9% identity (60.2% similar) in 394 aa overlap (5-390:37-414)

                                         10        20        30    
pF1KE0                           MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLS
                                     :  . .:  .: .   :   ::.    :: 
CCDS24 LLRYYPPGIMLEYEKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLL
         10        20        30        40        50        60      

           40              50        60        70        80        
pF1KE0 WGTMARALGR------FKLSIPHTHLLATLDPLALDREPPPHLLPEKHQVPEKLIWGDQD
          . . ::.      . ... ..:.:  :  .::..     ..  ...   :: :   :
CCDS24 IQRLQEKLGQNSNHTFYLFKVLKAHILP-LTNVALNKSGS-CFITGSYDRTCKL-W---D
         70        80        90        100        110           120

       90       100       110        120       130       140       
pF1KE0 PLSKIPFKILSGHEHAVSTCHFCVD-DTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAP
         :   .. : ::...: .  :      :. .::.: : :::.   :.  . :. .  : 
CCDS24 TASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHT-AE
              130       140       150       160       170          

       150       160       170       180        190       200      
pF1KE0 VVECSITGDSSRVIAASYDKTVRAWDLETGKLLWKVR-YDTFIVSCKFSPDGKYVVSGFD
       .:  :.. .:. : ..:.: :.. ::...:. .. .: ... :.: .:. .:  ...: .
CCDS24 IVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITG-S
     180       190       200       210       220       230         

        210       220       230       240       250       260      
pF1KE0 VDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLL
        :: . . ::..   :...  : .. :.:  :. : . . . :.:.  :.::.:.   . 
CCDS24 FDHTVVVWDADTGRKVNILIGHCAE-ISSASFNWDCSLILTGSMDKTCKLWDATNGKCVA
      240       250       260        270       280       290       

        270       280       290       300       310       320      
pF1KE0 TITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSS
       :.: .:.. : . :: ..:... :.: : . .:... : .      :.. ..:::: .:.
CCDS24 TLT-GHDDEILDSCFDYTGKLIATASADGTARIFSAATRK------CIAKLEGHEGEISK
       300        310       320       330             340       350

        330       340       350       360       370       380      
pF1KE0 CHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRT
         :  ... :..:. :.:. :::.  :     :.::.: ... :.. . . ....::: :
CCDS24 ISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNT
              360       370       380       390       400       410

        390       400       410       420       430       440      
pF1KE0 MRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDRPFSIFKSDTSSEMFTQCVFCRIDTRG
        :.:                                                        
CCDS24 CRIWR                                                       
                                                                   

>>CCDS31869.1 POC1B gene_id:282809|Hs108|chr12            (478 aa)
 initn: 169 init1: 100 opt: 344  Z-score: 309.2  bits: 66.6 E(32554): 6.7e-11
Smith-Waterman score: 406; 28.9% identity (58.1% similar) in 301 aa overlap (62-361:23-308)

              40        50        60        70        80        90 
pF1KE0 KLSWGTMARALGRFKLSIPHTHLLATLDPLALDREPPPHLLPEKHQVPEKLIWGDQDPLS
                                     .::  :  . :         ..: .  : .
CCDS31         MASATEDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLW-NFKPHA
                       10        20        30        40         50 

             100       110       120       130       140       150 
pF1KE0 KIPFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAPVVEC
       .  .. . ::. .:.. .:    . : :.: : ::.:: :   .   .:. .  :::   
CCDS31 RA-YRYV-GHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHT-APVRSV
                60        70        80        90       100         

             160       170       180       190        200       210
pF1KE0 SITGDSSRVIAASYDKTVRAWDLETGKLLWKVRYDTFIVSC-KFSPDGKYVVSGFDVDHG
       ....:.. . .:: ::....:..   ..:...   :  : : ::::::. .::  . :. 
CCDS31 DFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSE-DKT
      110       120       130       140       150       160        

              220       230       240       250       260       270
pF1KE0 ICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLLTITK
       : : :. :   :. ..:  .   .   :.:..  .::.. :. .:.:::  .  ::   .
CCDS31 IKIWDTTNKQCVNNFSDS-VGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNK-LLQHYQ
       170       180        190       200       210        220     

              280       290       300       310       320       330
pF1KE0 AHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSSCHFA
       .::....   :  ::..: :.: : .::: ..  :..      .  .::: : : .  :.
CCDS31 VHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRL------IYTLQGHTGPVFTVSFS
         230       240       250       260             270         

              340       350       360       370       380       390
pF1KE0 RDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLW
       . . .. ::: :  : .: .  .. .:  ::                             
CCDS31 KGGELFASGGADTQVLLWRT--NFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHE
     280       290         300       310       320       330       

              400       410       420       430       440       450
pF1KE0 NIEEIDEIPLVIKYKKAVGLKLKQCERCDRPFSIFKSDTSSEMFTQCVFCRIDTRGLPAD
                                                                   
CCDS31 EKVETVEINPKLEVIDLQISTPPVMDILSFDSTTTTETSGRTLPDKGEEACGYFLNPSLM
       340       350       360       370       380       390       




472 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:49:23 2016 done: Fri Nov  4 05:49:23 2016
 Total Scan time:  3.530 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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