Result of FASTA (omim) for pF1KB9904
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9904, 589 aa
  1>>>pF1KB9904 589 - 589 aa - 589 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2206+/-0.00041; mu= 5.0959+/- 0.026
 mean_var=364.1082+/-73.469, 0's: 0 Z-trim(122.6): 42  B-trim: 93 in 1/59
 Lambda= 0.067214
 statistics sampled from 40928 (40975) to 40928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.48), width:  16
 Scan time:  9.140

The best scores are:                                      opt bits E(85289)
NP_001524 (OMIM: 603083) heterogeneous nuclear rib ( 589) 4115 413.1 1.3e-114
XP_011525189 (OMIM: 603083) PREDICTED: heterogeneo ( 532) 3496 353.0 1.4e-96
XP_011525188 (OMIM: 603083) PREDICTED: heterogeneo ( 518) 3491 352.5 1.9e-96
XP_011525191 (OMIM: 603083) PREDICTED: heterogeneo ( 456) 3200 324.3 5.6e-88
NP_001005335 (OMIM: 603083) heterogeneous nuclear  ( 456) 3200 324.3 5.6e-88
XP_011525190 (OMIM: 603083) PREDICTED: heterogeneo ( 528) 2310 238.0 5.9e-62
NP_001136122 (OMIM: 611208) heterogeneous nuclear  ( 537) 1025 113.4 1.9e-24
NP_612403 (OMIM: 611208) heterogeneous nuclear rib ( 542) 1025 113.4 1.9e-24
XP_011531468 (OMIM: 611208) PREDICTED: heterogeneo ( 570) 1025 113.5   2e-24
XP_005264697 (OMIM: 611208) PREDICTED: heterogeneo ( 590) 1025 113.5   2e-24
XP_005264696 (OMIM: 611208) PREDICTED: heterogeneo ( 595) 1025 113.5   2e-24
XP_011531467 (OMIM: 611208) PREDICTED: heterogeneo ( 571)  970 108.1   8e-23


>>NP_001524 (OMIM: 603083) heterogeneous nuclear ribonuc  (589 aa)
 initn: 4115 init1: 4115 opt: 4115  Z-score: 2178.7  bits: 413.1 E(85289): 1.3e-114
Smith-Waterman score: 4115; 100.0% identity (100.0% similar) in 589 aa overlap (1-589:1-589)

               10        20        30        40        50        60
pF1KB9 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
              490       500       510       520       530       540

              550       560       570       580         
pF1KB9 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
              550       560       570       580         

>>XP_011525189 (OMIM: 603083) PREDICTED: heterogeneous n  (532 aa)
 initn: 3496 init1: 3496 opt: 3496  Z-score: 1854.8  bits: 353.0 E(85289): 1.4e-96
Smith-Waterman score: 3581; 90.3% identity (90.3% similar) in 589 aa overlap (1-589:1-532)

               10        20        30        40        50        60
pF1KB9 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
       ::::::::::::::::::::::::::::::::                            
XP_011 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAM----------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB9 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
                                    :::::::::::::::::::::::::::::::
XP_011 -----------------------------ENYDDPHKTPASPVVHIRGLIDGVVEADLVE
                                          40        50        60   

              130       140       150       160       170       180
pF1KB9 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
            70        80        90       100       110       120   

              190       200       210       220       230       240
pF1KB9 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
           130       140       150       160       170       180   

              250       260       270       280       290       300
pF1KB9 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
           190       200       210       220       230       240   

              310       320       330       340       350       360
pF1KB9 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
           250       260       270       280       290       300   

              370       380       390       400       410       420
pF1KB9 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
           310       320       330       340       350       360   

              430       440       450       460       470       480
pF1KB9 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
           370       380       390       400       410       420   

              490       500       510       520       530       540
pF1KB9 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
           430       440       450       460       470       480   

              550       560       570       580         
pF1KB9 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
           490       500       510       520       530  

>>XP_011525188 (OMIM: 603083) PREDICTED: heterogeneous n  (518 aa)
 initn: 3491 init1: 3491 opt: 3491  Z-score: 1852.4  bits: 352.5 E(85289): 1.9e-96
Smith-Waterman score: 3491; 100.0% identity (100.0% similar) in 500 aa overlap (90-589:19-518)

      60        70        80        90       100       110         
pF1KB9 RLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLV
                                     ::::::::::::::::::::::::::::::
XP_011             MRRRSVPARPRGRLGERLENYDDPHKTPASPVVHIRGLIDGVVEADLV
                           10        20        30        40        

     120       130       140       150       160       170         
pF1KB9 EALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKI
       50        60        70        80        90       100        

     180       190       200       210       220       230         
pF1KB9 SRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFD
      110       120       130       140       150       160        

     240       250       260       270       280       290         
pF1KB9 SVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSN
      170       180       190       200       210       220        

     300       310       320       330       340       350         
pF1KB9 PNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRY
      230       240       250       260       270       280        

     360       370       380       390       400       410         
pF1KB9 GPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKP
      290       300       310       320       330       340        

     420       430       440       450       460       470         
pF1KB9 GAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSE
      350       360       370       380       390       400        

     480       490       500       510       520       530         
pF1KB9 SRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKS
      410       420       430       440       450       460        

     540       550       560       570       580         
pF1KB9 ERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
      470       480       490       500       510        

>>XP_011525191 (OMIM: 603083) PREDICTED: heterogeneous n  (456 aa)
 initn: 3200 init1: 3200 opt: 3200  Z-score: 1700.5  bits: 324.3 E(85289): 5.6e-88
Smith-Waterman score: 3200; 100.0% identity (100.0% similar) in 456 aa overlap (134-589:1-456)

           110       120       130       140       150       160   
pF1KB9 VHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIY
                                     ::::::::::::::::::::::::::::::
XP_011                               MPKKRQALVEFEDVLGACNAVNYAADNQIY
                                             10        20        30

           170       180       190       200       210       220   
pF1KB9 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
               40        50        60        70        80        90

           230       240       250       260       270       280   
pF1KB9 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
              100       110       120       130       140       150

           290       300       310       320       330       340   
pF1KB9 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
              160       170       180       190       200       210

           350       360       370       380       390       400   
pF1KB9 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
              220       230       240       250       260       270

           410       420       430       440       450       460   
pF1KB9 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
              280       290       300       310       320       330

           470       480       490       500       510       520   
pF1KB9 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
              340       350       360       370       380       390

           530       540       550       560       570       580   
pF1KB9 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
              400       410       420       430       440       450

             
pF1KB9 TAQHAS
       ::::::
XP_011 TAQHAS
             

>>NP_001005335 (OMIM: 603083) heterogeneous nuclear ribo  (456 aa)
 initn: 3200 init1: 3200 opt: 3200  Z-score: 1700.5  bits: 324.3 E(85289): 5.6e-88
Smith-Waterman score: 3200; 100.0% identity (100.0% similar) in 456 aa overlap (134-589:1-456)

           110       120       130       140       150       160   
pF1KB9 VHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIY
                                     ::::::::::::::::::::::::::::::
NP_001                               MPKKRQALVEFEDVLGACNAVNYAADNQIY
                                             10        20        30

           170       180       190       200       210       220   
pF1KB9 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
               40        50        60        70        80        90

           230       240       250       260       270       280   
pF1KB9 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
              100       110       120       130       140       150

           290       300       310       320       330       340   
pF1KB9 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
              160       170       180       190       200       210

           350       360       370       380       390       400   
pF1KB9 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
              220       230       240       250       260       270

           410       420       430       440       450       460   
pF1KB9 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
              280       290       300       310       320       330

           470       480       490       500       510       520   
pF1KB9 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
              340       350       360       370       380       390

           530       540       550       560       570       580   
pF1KB9 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
              400       410       420       430       440       450

             
pF1KB9 TAQHAS
       ::::::
NP_001 TAQHAS
             

>>XP_011525190 (OMIM: 603083) PREDICTED: heterogeneous n  (528 aa)
 initn: 3690 init1: 2305 opt: 2310  Z-score: 1233.3  bits: 238.0 E(85289): 5.9e-62
Smith-Waterman score: 3572; 89.6% identity (89.6% similar) in 589 aa overlap (1-589:1-528)

               10        20        30        40        50        60
pF1KB9 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
       ::::::::::::::::::::::::::::                                
XP_011 RPGDSDDSRSVNSVLLFTILNPIYSITT--------------------------------
              190       200                                        

              250       260       270       280       290       300
pF1KB9 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
                                    :::::::::::::::::::::::::::::::
XP_011 -----------------------------PTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
                                   210       220       230         

              310       320       330       340       350       360
pF1KB9 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
     240       250       260       270       280       290         

              370       380       390       400       410       420
pF1KB9 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
     300       310       320       330       340       350         

              430       440       450       460       470       480
pF1KB9 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
     360       370       380       390       400       410         

              490       500       510       520       530       540
pF1KB9 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
     420       430       440       450       460       470         

              550       560       570       580         
pF1KB9 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
     480       490       500       510       520        

>>NP_001136122 (OMIM: 611208) heterogeneous nuclear ribo  (537 aa)
 initn: 1767 init1: 934 opt: 1025  Z-score: 559.8  bits: 113.4 E(85289): 1.9e-24
Smith-Waterman score: 1884; 57.1% identity (76.7% similar) in 520 aa overlap (71-587:44-536)

               50        60        70        80        90       100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
                                     ::: ::::: . .   .:: .    ::. .
NP_001 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
            20        30        40        50        60             

              110       120       130       140       150       160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
       :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
NP_001 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
      70        80        90       100       110       120         

              170       180       190       200       210       220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
        .::::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : 
NP_001 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
     130       140       150       160       170       180         

              230       240       250       260       270       280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
       :::::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.
NP_001 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
     190       200       210       220       230       240         

              290       300       310       320       330       340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
       :.::::.: : :. : :..   ::::  .::.::. .   : :: ::      ::  :  
NP_001 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
     250        260          270        280               290      

              350       360       370         380       390        
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
          :::          ::  :.    : :     :  : . .. :.:: :: : ::::.:
NP_001 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
        300                 310       320       330       340      

      400       410       420       430       440       450        
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
       :::.::::::.:::::::. ::.:.:::.: :::.::.:::::  .::..:::::::: .
NP_001 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
        350       360       370       380       390       400      

      460       470       480       490       500       510        
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
       ..:.: . ::::. :::::. :.::::..  ::.:: :: :: :::..:.:: ::::.: 
NP_001 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
        410       420       430       440       450       460      

      520       530        540       550       560       570       
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
       ..:..  :    . :::..: : .. ::::::: :.::.:.:  :::::.. :::  :::
NP_001 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYT
        470       480       490       500       510       520      

       580         
pF1KB9 LKLCFSTAQHAS
       :::::::..:  
NP_001 LKLCFSTSSHL 
        530        

>>NP_612403 (OMIM: 611208) heterogeneous nuclear ribonuc  (542 aa)
 initn: 1767 init1: 934 opt: 1025  Z-score: 559.8  bits: 113.4 E(85289): 1.9e-24
Smith-Waterman score: 1884; 57.1% identity (76.7% similar) in 520 aa overlap (71-587:49-541)

               50        60        70        80        90       100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
                                     ::: ::::: . .   .:: .    ::. .
NP_612 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
       20        30        40        50        60            70    

              110       120       130       140       150       160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
       :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
NP_612 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
           80        90       100       110       120       130    

              170       180       190       200       210       220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
        .::::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : 
NP_612 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
          140       150       160       170       180       190    

              230       240       250       260       270       280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
       :::::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.
NP_612 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
          200       210       220       230       240       250    

              290       300       310       320       330       340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
       :.::::.: : :. : :..   ::::  .::.::. .   : :: ::      ::  :  
NP_612 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
          260        270           280         290             300 

              350       360       370         380       390        
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
          :::          ::  :.    : :     :  : . .. :.:: :: : ::::.:
NP_612 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
                       310       320       330       340       350 

      400       410       420       430       440       450        
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
       :::.::::::.:::::::. ::.:.:::.: :::.::.:::::  .::..:::::::: .
NP_612 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
             360       370       380       390       400       410 

      460       470       480       490       500       510        
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
       ..:.: . ::::. :::::. :.::::..  ::.:: :: :: :::..:.:: ::::.: 
NP_612 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
             420       430       440       450       460       470 

      520       530        540       550       560       570       
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
       ..:..  :    . :::..: : .. ::::::: :.::.:.:  :::::.. :::  :::
NP_612 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYT
             480       490       500       510       520       530 

       580         
pF1KB9 LKLCFSTAQHAS
       :::::::..:  
NP_612 LKLCFSTSSHL 
             540   

>>XP_011531468 (OMIM: 611208) PREDICTED: heterogeneous n  (570 aa)
 initn: 1674 init1: 934 opt: 1025  Z-score: 559.5  bits: 113.5 E(85289): 2e-24
Smith-Waterman score: 1791; 56.5% identity (76.3% similar) in 503 aa overlap (71-570:49-524)

               50        60        70        80        90       100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
                                     ::: ::::: . .   .:: .    ::. .
XP_011 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
       20        30        40        50        60            70    

              110       120       130       140       150       160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
       :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
XP_011 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
           80        90       100       110       120       130    

              170       180       190       200       210       220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
        .::::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : 
XP_011 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
          140       150       160       170       180       190    

              230       240       250       260       270       280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
       :::::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.
XP_011 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
          200       210       220       230       240       250    

              290       300       310       320       330       340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
       :.::::.: : :. : :..   ::::  .::.::. .   : :: ::      ::  :  
XP_011 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
          260        270           280         290             300 

              350       360       370         380       390        
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
          :::          ::  :.    : :     :  : . .. :.:: :: : ::::.:
XP_011 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
                       310       320       330       340       350 

      400       410       420       430       440       450        
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
       :::.::::::.:::::::. ::.:.:::.: :::.::.:::::  .::..:::::::: .
XP_011 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
             360       370       380       390       400       410 

      460       470       480       490       500       510        
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
       ..:.: . ::::. :::::. :.::::..  ::.:: :: :: :::..:.:: ::::.: 
XP_011 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
             420       430       440       450       460       470 

      520       530        540       550       560       570       
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
       ..:..  :    . :::..: : .. ::::::: :.::.:.:  :::::.. :       
XP_011 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPIISKLMY
             480       490       500       510       520       530 

       580                                    
pF1KB9 LKLCFSTAQHAS                           
                                              
XP_011 PIDEERFNTRFPGTFWDHRCLHVHSSFDLLPKLYLNWLL
             540       550       560       570

>>XP_005264697 (OMIM: 611208) PREDICTED: heterogeneous n  (590 aa)
 initn: 1674 init1: 934 opt: 1025  Z-score: 559.4  bits: 113.5 E(85289): 2e-24
Smith-Waterman score: 1791; 56.5% identity (76.3% similar) in 503 aa overlap (71-570:44-519)

               50        60        70        80        90       100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
                                     ::: ::::: . .   .:: .    ::. .
XP_005 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
            20        30        40        50        60             

              110       120       130       140       150       160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
       :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
XP_005 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
      70        80        90       100       110       120         

              170       180       190       200       210       220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
        .::::. :: :::::..:.:::..::  . :.:::..: ::.: ::.:::::.::: : 
XP_005 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
     130       140       150       160       170       180         

              230       240       250       260       270       280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
       :::::::..::.::::::.::  ::.:::.:::::::.::::::::::.::::::..::.
XP_005 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
     190       200       210       220       230       240         

              290       300       310       320       330       340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
       :.::::.: : :. : :..   ::::  .::.::. .   : :: ::      ::  :  
XP_005 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
     250        260          270        280               290      

              350       360       370         380       390        
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
          :::          ::  :.    : :     :  : . .. :.:: :: : ::::.:
XP_005 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
        300                 310       320       330       340      

      400       410       420       430       440       450        
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
       :::.::::::.:::::::. ::.:.:::.: :::.::.:::::  .::..:::::::: .
XP_005 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
        350       360       370       380       390       400      

      460       470       480       490       500       510        
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
       ..:.: . ::::. :::::. :.::::..  ::.:: :: :: :::..:.:: ::::.: 
XP_005 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
        410       420       430       440       450       460      

      520       530        540       550       560       570       
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
       ..:..  :    . :::..: : .. ::::::: :.::.:.:  :::::.. :       
XP_005 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPKTGFHHV
        470       480       490       500       510       520      

       580                                                         
pF1KB9 LKLCFSTAQHAS                                                
                                                                   
XP_005 GQAGLELLDLMICPPPPSEVLGLQAWFQSLYIEALLFYIIPFIRREEHVRIYVHLYYNFK
        530       540       550       560       570       580      




589 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:27:04 2016 done: Sat Nov  5 21:27:05 2016
 Total Scan time:  9.140 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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