Result of FASTA (omim) for pF1KE1011
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1011, 228 aa
  1>>>pF1KE1011 228 - 228 aa - 228 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8720+/-0.000303; mu= -1.1714+/- 0.019
 mean_var=200.7504+/-40.881, 0's: 0 Z-trim(123.3): 18  B-trim: 593 in 1/61
 Lambda= 0.090520
 statistics sampled from 42920 (42940) to 42920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.503), width:  16
 Scan time:  7.350

The best scores are:                                      opt bits E(85289)
NP_036366 (OMIM: 607535) RING1 and YY1-binding pro ( 228) 1463 202.4 5.2e-52
NP_005739 (OMIM: 607534) YY1-associated factor 2 i ( 180)  528 80.2 2.5e-15
NP_001177908 (OMIM: 607534) YY1-associated factor  ( 204)  371 59.8   4e-09
NP_001177909 (OMIM: 607534) YY1-associated factor  ( 117)  353 57.3 1.3e-08
NP_001177906 (OMIM: 607534) YY1-associated factor  ( 138)  350 56.9   2e-08
XP_016874159 (OMIM: 607534) PREDICTED: YY1-associa ( 120)  338 55.3 5.2e-08
XP_011536031 (OMIM: 607534) PREDICTED: YY1-associa ( 159)  337 55.3 7.2e-08
NP_001307009 (OMIM: 607534) YY1-associated factor  ( 171)  337 55.3 7.6e-08
XP_006719248 (OMIM: 607534) PREDICTED: YY1-associa ( 177)  337 55.3 7.8e-08
XP_006719247 (OMIM: 607534) PREDICTED: YY1-associa ( 182)  337 55.3   8e-08
XP_016874158 (OMIM: 607534) PREDICTED: YY1-associa ( 187)  337 55.3 8.2e-08
XP_011536030 (OMIM: 607534) PREDICTED: YY1-associa ( 238)  338 55.5 9.1e-08


>>NP_036366 (OMIM: 607535) RING1 and YY1-binding protein  (228 aa)
 initn: 1463 init1: 1463 opt: 1463  Z-score: 1054.7  bits: 202.4 E(85289): 5.2e-52
Smith-Waterman score: 1463; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KE1 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSS
              130       140       150       160       170       180

              190       200       210       220        
pF1KE1 STSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 STSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF
              190       200       210       220        

>>NP_005739 (OMIM: 607534) YY1-associated factor 2 isofo  (180 aa)
 initn: 809 init1: 499 opt: 528  Z-score: 396.3  bits: 80.2 E(85289): 2.5e-15
Smith-Waterman score: 737; 56.4% identity (72.9% similar) in 225 aa overlap (3-227:1-179)

               10        20        30        40        50        60
pF1KE1 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
         ::::::::::::: ::..:::.::::::::::::::::: .:::::::::::::  ::
NP_005   MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQ
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE1 LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
       ::::::.::.. :   :::::.:::   ::: ::.     ...:::..:::         
NP_005 LVAQQVTQQFVPPTQSKKEKKDKVE---KEKSEKE-----TTSKKNSHKKT---------
       60        70        80           90            100          

              130       140       150       160       170       180
pF1KE1 PPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSS
                               ::::::::::.::.: ::::..:::::::::::.: 
NP_005 ------------------------RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSP
                                     110       120       130       

              190       200       210       220        
pF1KE1 STSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF
        .::.     :...:..::.:.:..:..: ::::.:.:. :..: :: 
NP_005 PASSA-----ASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
       140            150       160       170       180

>>NP_001177908 (OMIM: 607534) YY1-associated factor 2 is  (204 aa)
 initn: 809 init1: 345 opt: 371  Z-score: 284.7  bits: 59.8 E(85289): 4e-09
Smith-Waterman score: 679; 51.0% identity (65.9% similar) in 249 aa overlap (3-227:1-203)

               10        20        30        40        50          
pF1KE1 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTR-------
         ::::::::::::: ::..:::.::::::::::::::::: .::::::::::       
NP_001   MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRSTLFEVI
                 10        20        30        40        50        

                             60        70        80        90      
pF1KE1 -----------------KPRINSQLVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDK
                        :::  ::::::::.::.. :   :::::.:::   ::: ::. 
NP_001 VSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVE---KEKSEKE-
       60        70        80        90       100          110     

        100       110       120       130       140       150      
pF1KE1 EISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTA
           ...:::..:::                                 ::::::::::.:
NP_001 ----TTSKKNSHKKT---------------------------------RPRLKNVDRSSA
              120                                        130       

        160       170       180       190       200       210      
pF1KE1 QQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTP
       :.: ::::..:::::::::::.:  .::.     :...:..::.:.:..:..: ::::.:
NP_001 QHLEVTVGDLTVIITDFKEKTKSPPASSA-----ASADQHSQSGSSSDNTERGMSRSSSP
       140       150       160            170       180       190  

        220        
pF1KE1 KGDMSAVNDESF
       .:. :..: :: 
NP_001 RGEASSLNGESH
            200    

>>NP_001177909 (OMIM: 607534) YY1-associated factor 2 is  (117 aa)
 initn: 380 init1: 352 opt: 353  Z-score: 275.5  bits: 57.3 E(85289): 1.3e-08
Smith-Waterman score: 353; 46.8% identity (75.7% similar) in 111 aa overlap (3-113:1-106)

               10        20        30        40        50        60
pF1KE1 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
         ::::::::::::: ::..:::.::::::::::::::::: .::::::::::  . ...
NP_001   MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRDSKEGGK
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE1 LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
       ::. ..:.  .     .   ...:   ..:. .. . ..:.  .. ... . :       
NP_001 LVSYSTASLGV-----RGTLRNRVGGGSSEEKKQAEYLAPGRRRNIVHRGVGPGQRSGPS
       60             70        80        90       100       110   

              130       140       150       160       170       180
pF1KE1 PPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSS
                                                                   
NP_001 LKEA                                                        
                                                                   

>>NP_001177906 (OMIM: 607534) YY1-associated factor 2 is  (138 aa)
 initn: 553 init1: 206 opt: 350  Z-score: 272.3  bits: 56.9 E(85289): 2e-08
Smith-Waterman score: 416; 47.2% identity (66.1% similar) in 180 aa overlap (48-227:4-137)

        20        30        40        50        60        70       
pF1KE1 PAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQYATPPPPK
                                     : . :::::  ::::::::.::.. :   :
NP_001                            MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSK
                                          10        20        30   

        80        90       100       110       120       130       
pF1KE1 KEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKT
       ::::.:::   ::: ::.     ...:::..:::                          
NP_001 KEKKDKVE---KEKSEKE-----TTSKKNSHKKT--------------------------
            40                50                                   

       140       150       160       170       180       190       
pF1KE1 SETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQN
              ::::::::::.::.: ::::..:::::::::::.:  .::.     :...:..
NP_001 -------RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSA-----ASADQHS
             60        70        80        90       100            

       200       210       220        
pF1KE1 QSSSGSESTDKGSSRSSTPKGDMSAVNDESF
       ::.:.:..:..: ::::.:.:. :..: :: 
NP_001 QSGSSSDNTERGMSRSSSPRGEASSLNGESH
       110       120       130        

>>XP_016874159 (OMIM: 607534) PREDICTED: YY1-associated   (120 aa)
 initn: 338 init1: 338 opt: 338  Z-score: 264.8  bits: 55.3 E(85289): 5.2e-08
Smith-Waterman score: 338; 88.2% identity (96.1% similar) in 51 aa overlap (3-53:1-51)

               10        20        30        40        50        60
pF1KE1 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
         ::::::::::::: ::..:::.::::::::::::::::: .::::::::::       
XP_016   MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRMKNHEII
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE1 LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
                                                                   
XP_016 SFLKEGEKKKLDHLPVTGVLLLGNLHRSTLFEVIVSASRTKEPLKFPISGSSSGCPSGRF
       60        70        80        90       100       110        

>>XP_011536031 (OMIM: 607534) PREDICTED: YY1-associated   (159 aa)
 initn: 451 init1: 206 opt: 337  Z-score: 262.3  bits: 55.3 E(85289): 7.2e-08
Smith-Waterman score: 409; 47.5% identity (66.1% similar) in 177 aa overlap (51-227:28-158)

               30        40        50        60        70        80
pF1KE1 DEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEK
                                     : ::::  ::::::::.::.. :   ::::
XP_011    MVCGEGSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEK
                  10        20        30        40        50       

               90       100       110       120       130       140
pF1KE1 KEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSET
       :.::::   :: ::.     ...:::..:::                             
XP_011 KDKVEK---EKSEKE-----TTSKKNSHKKT-----------------------------
        60                70        80                             

              150       160       170       180       190       200
pF1KE1 NHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSS
           ::::::::::.::.: ::::..:::::::::::.:  .:     :.:...:..::.
XP_011 ----RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPAS-----SAASADQHSQSG
                   90       100       110            120       130 

              210       220        
pF1KE1 SGSESTDKGSSRSSTPKGDMSAVNDESF
       :.:..:..: ::::.:.:. :..: :: 
XP_011 SSSDNTERGMSRSSSPRGEASSLNGESH
             140       150         

>>NP_001307009 (OMIM: 607534) YY1-associated factor 2 is  (171 aa)
 initn: 504 init1: 206 opt: 337  Z-score: 261.8  bits: 55.3 E(85289): 7.6e-08
Smith-Waterman score: 399; 47.1% identity (66.1% similar) in 174 aa overlap (54-227:43-170)

            30        40        50        60        70        80   
pF1KE1 FWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEKKEK
                                     :::  ::::::::.::.. :   :::::.:
NP_001 REPGYHLVEQSCWLKPLPRNLGHSLFWTVWKPRPVSQLVAQQVTQQFVPPTQSKKEKKDK
             20        30        40        50        60        70  

            90       100       110       120       130       140   
pF1KE1 VEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSETNHT
       :::   :: ::.     ...:::..:::                                
NP_001 VEK---EKSEKE-----TTSKKNSHKKT--------------------------------
                80             90                                  

           150       160       170       180       190       200   
pF1KE1 SRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSSSGS
        ::::::::::.::.: ::::..:::::::::::.:  .::     .:...:..::.:.:
NP_001 -RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASS-----AASADQHSQSGSSS
             100       110       120       130            140      

           210       220        
pF1KE1 ESTDKGSSRSSTPKGDMSAVNDESF
       ..:..: ::::.:.:. :..: :: 
NP_001 DNTERGMSRSSSPRGEASSLNGESH
        150       160       170 

>>XP_006719248 (OMIM: 607534) PREDICTED: YY1-associated   (177 aa)
 initn: 451 init1: 206 opt: 337  Z-score: 261.6  bits: 55.3 E(85289): 7.8e-08
Smith-Waterman score: 409; 47.5% identity (66.1% similar) in 177 aa overlap (51-227:46-176)

               30        40        50        60        70        80
pF1KE1 DEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEK
                                     : ::::  ::::::::.::.. :   ::::
XP_006 VLLLGNLHRSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEK
          20        30        40        50        60        70     

               90       100       110       120       130       140
pF1KE1 KEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSET
       :.::::   :: ::.     ...:::..:::                             
XP_006 KDKVEK---EKSEKE-----TTSKKNSHKKT-----------------------------
          80                90                                     

              150       160       170       180       190       200
pF1KE1 NHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSS
           ::::::::::.::.: ::::..:::::::::::.:  .:     :.:...:..::.
XP_006 ----RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPAS-----SAASADQHSQSG
          100       110       120       130            140         

              210       220        
pF1KE1 SGSESTDKGSSRSSTPKGDMSAVNDESF
       :.:..:..: ::::.:.:. :..: :: 
XP_006 SSSDNTERGMSRSSSPRGEASSLNGESH
     150       160       170       

>>XP_006719247 (OMIM: 607534) PREDICTED: YY1-associated   (182 aa)
 initn: 474 init1: 206 opt: 337  Z-score: 261.4  bits: 55.3 E(85289): 8e-08
Smith-Waterman score: 409; 47.5% identity (66.1% similar) in 177 aa overlap (51-227:51-181)

               30        40        50        60        70        80
pF1KE1 DEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEK
                                     : ::::  ::::::::.::.. :   ::::
XP_006 VLLLGNLHRSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEK
               30        40        50        60        70        80

               90       100       110       120       130       140
pF1KE1 KEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSET
       :.::::   :: ::.     ...:::..:::                             
XP_006 KDKVEK---EKSEKE-----TTSKKNSHKKT-----------------------------
                  90            100                                

              150       160       170       180       190       200
pF1KE1 NHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSS
           ::::::::::.::.: ::::..:::::::::::.:  .:     :.:...:..::.
XP_006 ----RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPAS-----SAASADQHSQSG
               110       120       130       140            150    

              210       220        
pF1KE1 SGSESTDKGSSRSSTPKGDMSAVNDESF
       :.:..:..: ::::.:.:. :..: :: 
XP_006 SSSDNTERGMSRSSSPRGEASSLNGESH
          160       170       180  




228 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:11:41 2016 done: Sat Nov  5 21:11:42 2016
 Total Scan time:  7.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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