Result of FASTA (ccds) for pF1KE0009
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0009, 643 aa
  1>>>pF1KE0009 643 - 643 aa - 643 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5541+/-0.00111; mu= 1.4850+/- 0.067
 mean_var=294.5448+/-58.332, 0's: 0 Z-trim(112.9): 120  B-trim: 0 in 0/51
 Lambda= 0.074731
 statistics sampled from 13477 (13594) to 13477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.418), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS56578.1 ECM2 gene_id:1842|Hs108|chr9           ( 643) 4307 478.3 1.4e-134
CCDS6698.1 ECM2 gene_id:1842|Hs108|chr9            ( 699) 3059 343.8 4.8e-94
CCDS55601.1 PODN gene_id:127435|Hs108|chr1         ( 519)  530 71.0 4.7e-12
CCDS55602.1 PODN gene_id:127435|Hs108|chr1         ( 642)  493 67.1 8.6e-11
CCDS573.1 PODN gene_id:127435|Hs108|chr1           ( 661)  493 67.1 8.8e-11


>>CCDS56578.1 ECM2 gene_id:1842|Hs108|chr9                (643 aa)
 initn: 4307 init1: 4307 opt: 4307  Z-score: 2529.5  bits: 478.3 E(32554): 1.4e-134
Smith-Waterman score: 4307; 99.8% identity (99.8% similar) in 643 aa overlap (1-643:1-643)

               10        20        30        40        50        60
pF1KE0 MKIAVLFCFFLLIIFQTDFGKNEEIPRKQRRKIYHRRLRKSSTSHKHRSNRQLGIPQTTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS56 MKIAVLFCFFLLIIFQTDFGKNEEIPRKQRRKIYHRRLRKSSTSHKHRSNRQLGIQQTTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FTPVARLPIVNFDYSMEEKFESFSSFPGVESSYNVLPGKKGHCLVKGITMYNKAVWSPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FTPVARLPIVNFDYSMEEKFESFSSFPGVESSYNVLPGKKGHCLVKGITMYNKAVWSPEP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 CTTCLCSDGRVLCDETMCHPQRCPQTVIPEGECCPVCSATEQREPTNLLHKQLPPPQVGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CTTCLCSDGRVLCDETMCHPQRCPQTVIPEGECCPVCSATEQREPTNLLHKQLPPPQVGM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DRIVRKEALQSEEDEEVKEEDTEQKRETPESRNQGQLYSEGDSRGGDRKQRPGEERRLAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DRIVRKEALQSEEDEEVKEEDTEQKRETPESRNQGQLYSEGDSRGGDRKQRPGEERRLAH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QQQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRMPSRSPLPAPPRGTLRLPSGCSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QQQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRMPSRSPLPAPPRGTLRLPSGCSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAFNGLPNLERLDLSKNNITSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAFNGLPNLERLDLSKNNITSS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 GIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQAIDEESLSDLNQLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQAIDEESLSDLNQLVT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 LELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGLPGSIEELYLENNQIEEITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGLPGSIEELYLENNQIEEITE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 ICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 LLGNQIERIPGYVFGHMEPGLEYLYLSFNKLADDGMDRVSFYGAYHSLRELFLDHNDLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LLGNQIERIPGYVFGHMEPGLEYLYLSFNKLADDGMDRVSFYGAYHSLRELFLDHNDLKS
              550       560       570       580       590       600

              610       620       630       640   
pF1KE0 IPPGIQEMKALHFLRLNNNKIRCVSDAVLETVTNRSDVAFPLW
       :::::::::::::::::::::::::::::::::::::::::::
CCDS56 IPPGIQEMKALHFLRLNNNKIRCVSDAVLETVTNRSDVAFPLW
              610       620       630       640   

>>CCDS6698.1 ECM2 gene_id:1842|Hs108|chr9                 (699 aa)
 initn: 4526 init1: 3044 opt: 3059  Z-score: 1801.9  bits: 343.8 E(32554): 4.8e-94
Smith-Waterman score: 4113; 96.1% identity (96.3% similar) in 646 aa overlap (1-624:1-646)

               10        20        30        40        50        60
pF1KE0 MKIAVLFCFFLLIIFQTDFGKNEEIPRKQRRKIYHRRLRKSSTSHKHRSNRQLGIPQTTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS66 MKIAVLFCFFLLIIFQTDFGKNEEIPRKQRRKIYHRRLRKSSTSHKHRSNRQLGIQQTTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FTPVARLPIVNFDYSMEEKFESFSSFPGVESSYNVLPGKKGHCLVKGITMYNKAVWSPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FTPVARLPIVNFDYSMEEKFESFSSFPGVESSYNVLPGKKGHCLVKGITMYNKAVWSPEP
               70        80        90       100       110       120

              130       140       150       160                    
pF1KE0 CTTCLCSDGRVLCDETMCHPQRCPQTVIPEGECCPVCSAT--------------------
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS66 CTTCLCSDGRVLCDETMCHPQRCPQTVIPEGECCPVCSATVSYSLLSGIALNDRNEFSGD
              130       140       150       160       170       180

                170       180       190       200       210        
pF1KE0 --EQREPTNLLHKQLPPPQVGMDRIVRKEALQSEEDEEVKEEDTEQKRETPESRNQGQLY
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SSEQREPTNLLHKQLPPPQVGMDRIVRKEALQSEEDEEVKEEDTEQKRETPESRNQGQLY
              190       200       210       220       230       240

      220       230       240       250       260       270        
pF1KE0 SEGDSRGGDRKQRPGEERRLAHQQQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SEGDSRGGDRKQRPGEERRLAHQQQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRM
              250       260       270       280       290       300

      280       290       300       310       320       330        
pF1KE0 PSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPD
              310       320       330       340       350       360

      340       350       360       370       380       390        
pF1KE0 EAFNGLPNLERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EAFNGLPNLERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELK
              370       380       390       400       410       420

      400       410       420       430       440       450        
pF1KE0 VNENNLQAIDEESLSDLNQLVTLELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VNENNLQAIDEESLSDLNQLVTLELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIP
              430       440       450       460       470       480

      460       470       480       490       500       510        
pF1KE0 QGLPGSIEELYLENNQIEEITEICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QGLPGSIEELYLENNQIEEITEICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESI
              490       500       510       520       530       540

      520       530       540       550       560       570        
pF1KE0 DLSYNKLYHVPSYLPKSLLHLVLLGNQIERIPGYVFGHMEPGLEYLYLSFNKLADDGMDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DLSYNKLYHVPSYLPKSLLHLVLLGNQIERIPGYVFGHMEPGLEYLYLSFNKLADDGMDR
              550       560       570       580       590       600

      580       590       600       610       620       630        
pF1KE0 VSFYGAYHSLRELFLDHNDLKSIPPGIQEMKALHFLRLNNNKIRCVSDAVLETVTNRSDV
       :::::::::::::::::::::::::::::::::::::::::::: .              
CCDS66 VSFYGAYHSLRELFLDHNDLKSIPPGIQEMKALHFLRLNNNKIRNILPEEICNAEEDDDS
              610       620       630       640       650       660

      640                                     
pF1KE0 AFPLW                                  
                                              
CCDS66 NLEHLHLENNYIKIREIPSYTFSCIRSYSSIVLKPQNIK
              670       680       690         

>>CCDS55601.1 PODN gene_id:127435|Hs108|chr1              (519 aa)
 initn: 705 init1: 366 opt: 530  Z-score: 330.0  bits: 71.0 E(32554): 4.7e-12
Smith-Waterman score: 530; 30.3% identity (62.2% similar) in 376 aa overlap (261-634:89-453)

              240       250       260       270       280       290
pF1KE0 RPGEERRLAHQQQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRMPSRSPLPAPPRG
                                     ::.:  ::.::    . .  . : :.:  .
CCDS55 LLLPPQLHLGPVLAVRAPGFGRSGGHSLSPEENEFAEEEPV----LVLSPEEPGPGP--A
       60        70        80        90           100       110    

              300        310       320       330       340         
pF1KE0 TLRLPSGCSLSYR-TISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAFNGLPNLER
       ..  :  :. : . ...: .  : ..:     . . : : .:.. .::  ::. : .:..
CCDS55 AVSCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNKLEKIPPGAFSELSSLRE
            120       130       140       150       160       170  

     350       360       370       380       390       400         
pF1KE0 LDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQAIDE
       : :..: .:. :.  ..:  :..:  :....::: ..:. :: .:  :....: ....: 
CCDS55 LYLQNNYLTDEGLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIRSVDA
            180       190       200       210       220       230  

     410       420       430       440       450       460         
pF1KE0 ESLSDLNQLVTLELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGLPGSIEELY
       . :. . .:  : :..:.: : ...::::. :: :  ..: .: .. .:.:::  .. :.
CCDS55 NVLTPIRSLEYLLLHSNQLREQGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLM
            240       250       260       270       280       290  

     470       480       490       500       510       520         
pF1KE0 LENNQIEEITEICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESIDLSYNKLYHVP
       . .:::  : .  :  :  .. . : ::.:   ..   :. . . :.:.::: :.:. .:
CCDS55 ILHNQITGIGREDFATTYFLEELNLSYNRITSPQVHRDAFRKLRLLRSLDLSGNRLHTLP
            300       310       320       330       340       350  

     530       540       550        560       570       580        
pF1KE0 SYLPKSLLHLVLLGNQIERIP-GYVFGHMEPGLEYLYLSFNKLADDGMDRVSFYGAYHSL
         ::...  : .  :..  .  : . :  .  :. :::. :.: . ..   ..    : :
CCDS55 PGLPRNVHVLKVKRNELAALARGALVGMAQ--LRELYLTSNRLRSRALGPRAWVDLAH-L
            360       370       380         390       400          

      590       600       610       620       630       640        
pF1KE0 RELFLDHNDLKSIPPGIQEMKALHFLRLNNNKIRCVSDAVLETVTNRSDVAFPLW     
       . : .  :.:  :: :. :  .:..: :.::::  :   ..... :              
CCDS55 QLLDIAGNQLTEIPEGLPE--SLEYLYLQNNKISAVPANAFDSTPNLKGIFLRFNKLAVG
     410       420         430       440       450       460       

CCDS55 SVVDSAFRRLKHLQVLDIEGNLEFGDISKDRGRLGKEKEEEEEEEEEEEETR
       470       480       490       500       510         

>>CCDS55602.1 PODN gene_id:127435|Hs108|chr1              (642 aa)
 initn: 705 init1: 366 opt: 493  Z-score: 307.2  bits: 67.1 E(32554): 8.6e-11
Smith-Waterman score: 493; 31.2% identity (63.9% similar) in 324 aa overlap (312-634:258-576)

             290       300       310       320       330       340 
pF1KE0 SPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAF
                                     : ..:    : . .:.: .:.. .::  ::
CCDS55 HNNKLADAGLPDNMFNGSSNVEVLILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAF
       230       240       250       260       270       280       

             350       360       370       380       390       400 
pF1KE0 NGLPNLERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNE
       . : .:..: :..: .:. :.  ..:  :..:  :....::: ..:. :: .:  :....
CCDS55 SELSSLRELYLQNNYLTDEGLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEK
       290       300       310       320       330       340       

             410       420       430       440       450       460 
pF1KE0 NNLQAIDEESLSDLNQLVTLELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGL
       : ....: . :. . .:  : :..:.: : ...::::. :: :  ..: .: .. .:.::
CCDS55 NAIRSVDANVLTPIRSLEYLLLHSNQLREQGIHPLAFQGLKRLHTVHLYNNALERVPSGL
       350       360       370       380       390       400       

             470       480       490       500       510       520 
pF1KE0 PGSIEELYLENNQIEEITEICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESIDLS
       :  .. :.. .:::  : .  :  :  .. . : ::.:   ..   :. . . :.:.:::
CCDS55 PRRVRTLMILHNQITGIGREDFATTYFLEELNLSYNRITSPQVHRDAFRKLRLLRSLDLS
       410       420       430       440       450       460       

             530       540       550        560       570       580
pF1KE0 YNKLYHVPSYLPKSLLHLVLLGNQIERIP-GYVFGHMEPGLEYLYLSFNKLADDGMDRVS
        :.:. .:  ::...  : .  :..  .  : . :  .  :. :::. :.: . ..   .
CCDS55 GNRLHTLPPGLPRNVHVLKVKRNELAALARGALVGMAQ--LRELYLTSNRLRSRALGPRA
       470       480       490       500         510       520     

              590       600       610       620       630       640
pF1KE0 FYGAYHSLRELFLDHNDLKSIPPGIQEMKALHFLRLNNNKIRCVSDAVLETVTNRSDVAF
       .    : :. : .  :.:  :: :. :  .:..: :.::::  :   ..... :      
CCDS55 WVDLAH-LQLLDIAGNQLTEIPEGLPE--SLEYLYLQNNKISAVPANAFDSTPNLKGIFL
         530        540       550         560       570       580  

                                                                   
pF1KE0 PLW                                                         
                                                                   
CCDS55 RFNKLAVGSVVDSAFRRLKHLQVLDIEGNLEFGDISKDRGRLGKEKEEEEEEEEEEEETR
            590       600       610       620       630       640  

>>CCDS573.1 PODN gene_id:127435|Hs108|chr1                (661 aa)
 initn: 705 init1: 366 opt: 493  Z-score: 307.1  bits: 67.1 E(32554): 8.8e-11
Smith-Waterman score: 493; 31.2% identity (63.9% similar) in 324 aa overlap (312-634:277-595)

             290       300       310       320       330       340 
pF1KE0 SPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAF
                                     : ..:    : . .:.: .:.. .::  ::
CCDS57 HNNKLADAGLPDNMFNGSSNVEVLILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAF
        250       260       270       280       290       300      

             350       360       370       380       390       400 
pF1KE0 NGLPNLERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNE
       . : .:..: :..: .:. :.  ..:  :..:  :....::: ..:. :: .:  :....
CCDS57 SELSSLRELYLQNNYLTDEGLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEK
        310       320       330       340       350       360      

             410       420       430       440       450       460 
pF1KE0 NNLQAIDEESLSDLNQLVTLELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGL
       : ....: . :. . .:  : :..:.: : ...::::. :: :  ..: .: .. .:.::
CCDS57 NAIRSVDANVLTPIRSLEYLLLHSNQLREQGIHPLAFQGLKRLHTVHLYNNALERVPSGL
        370       380       390       400       410       420      

             470       480       490       500       510       520 
pF1KE0 PGSIEELYLENNQIEEITEICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESIDLS
       :  .. :.. .:::  : .  :  :  .. . : ::.:   ..   :. . . :.:.:::
CCDS57 PRRVRTLMILHNQITGIGREDFATTYFLEELNLSYNRITSPQVHRDAFRKLRLLRSLDLS
        430       440       450       460       470       480      

             530       540       550        560       570       580
pF1KE0 YNKLYHVPSYLPKSLLHLVLLGNQIERIP-GYVFGHMEPGLEYLYLSFNKLADDGMDRVS
        :.:. .:  ::...  : .  :..  .  : . :  .  :. :::. :.: . ..   .
CCDS57 GNRLHTLPPGLPRNVHVLKVKRNELAALARGALVGMAQ--LRELYLTSNRLRSRALGPRA
        490       500       510       520         530       540    

              590       600       610       620       630       640
pF1KE0 FYGAYHSLRELFLDHNDLKSIPPGIQEMKALHFLRLNNNKIRCVSDAVLETVTNRSDVAF
       .    : :. : .  :.:  :: :. :  .:..: :.::::  :   ..... :      
CCDS57 WVDLAH-LQLLDIAGNQLTEIPEGLPE--SLEYLYLQNNKISAVPANAFDSTPNLKGIFL
          550        560       570         580       590       600 

                                                                   
pF1KE0 PLW                                                         
                                                                   
CCDS57 RFNKLAVGSVVDSAFRRLKHLQVLDIEGNLEFGDISKDRGRLGKEKEEEEEEEEEEEETR
             610       620       630       640       650       660 




643 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:30:29 2016 done: Fri Nov  4 08:30:30 2016
 Total Scan time:  2.760 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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