Result of FASTA (omim) for pF1KB8748
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8748, 169 aa
  1>>>pF1KB8748 169 - 169 aa - 169 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5639+/-0.000386; mu= -10.8559+/- 0.024
 mean_var=323.1766+/-64.088, 0's: 0 Z-trim(122.7): 56  B-trim: 0 in 0/55
 Lambda= 0.071343
 statistics sampled from 41305 (41370) to 41305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.485), width:  16
 Scan time:  5.580

The best scores are:                                      opt bits E(85289)
NP_001091058 (OMIM: 182271) small proline-rich pro ( 169) 1240 139.8 1.9e-33
NP_005407 (OMIM: 182271) small proline-rich protei ( 169) 1240 139.8 1.9e-33
NP_003116 (OMIM: 182266) cornifin-B [Homo sapiens] (  89)  387 51.8 3.2e-07
NP_001186757 (OMIM: 182265) cornifin-A [Homo sapie (  89)  373 50.4 8.7e-07
NP_005978 (OMIM: 182265) cornifin-A [Homo sapiens] (  89)  373 50.4 8.7e-07
XP_016855492 (OMIM: 208250,604283) PREDICTED: prot (1270)  282 42.0  0.0043
NP_001121182 (OMIM: 208250,604283) proteoglycan 4  (1270)  282 42.0  0.0043
XP_016855491 (OMIM: 208250,604283) PREDICTED: prot (1311)  282 42.0  0.0044
NP_001121181 (OMIM: 208250,604283) proteoglycan 4  (1311)  282 42.0  0.0044
NP_001290161 (OMIM: 208250,604283) proteoglycan 4  (1361)  282 42.0  0.0045
NP_001121180 (OMIM: 208250,604283) proteoglycan 4  (1363)  282 42.0  0.0045
NP_005798 (OMIM: 208250,604283) proteoglycan 4 iso (1404)  282 42.0  0.0046


>>NP_001091058 (OMIM: 182271) small proline-rich protein  (169 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 721.3  bits: 139.8 E(85289): 1.9e-33
Smith-Waterman score: 1240; 99.4% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
               70        80        90       100       110       120

              130       140       150       160         
pF1KB8 GFIKFPEPGAIKVPEQGYTKVPVPGYTKVPEPCPSTVTPGPAQQKTKQK
       ::::::::::::::::::::::::::::.::::::::::::::::::::
NP_001 GFIKFPEPGAIKVPEQGYTKVPVPGYTKLPEPCPSTVTPGPAQQKTKQK
              130       140       150       160         

>>NP_005407 (OMIM: 182271) small proline-rich protein 3   (169 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 721.3  bits: 139.8 E(85289): 1.9e-33
Smith-Waterman score: 1240; 99.4% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
               70        80        90       100       110       120

              130       140       150       160         
pF1KB8 GFIKFPEPGAIKVPEQGYTKVPVPGYTKVPEPCPSTVTPGPAQQKTKQK
       ::::::::::::::::::::::::::::.::::::::::::::::::::
NP_005 GFIKFPEPGAIKVPEQGYTKVPVPGYTKLPEPCPSTVTPGPAQQKTKQK
              130       140       150       160         

>>NP_003116 (OMIM: 182266) cornifin-B [Homo sapiens]      (89 aa)
 initn: 375 init1: 375 opt: 387  Z-score: 250.6  bits: 51.8 E(85289): 3.2e-07
Smith-Waterman score: 387; 62.9% identity (73.0% similar) in 89 aa overlap (1-87:1-88)

               10        20        30        40        50        60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
       ::: ::::  :::::::::::::: ::::::  .: :::::: :::.: . :.:::   :
NP_003 MSSQQQKQPCTPPPQLQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPK
               10        20        30        40        50        60

               70          80        90       100       110        
pF1KB8 VPEPGCTKVPEPGCTKV--PEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVP
       ::::   ::::: : ..  : :.  :. .                               
NP_003 VPEPCHPKVPEP-CPSIVTPAPAQQKTKQK                              
               70         80                                       

>>NP_001186757 (OMIM: 182265) cornifin-A [Homo sapiens]   (89 aa)
 initn: 362 init1: 362 opt: 373  Z-score: 242.8  bits: 50.4 E(85289): 8.7e-07
Smith-Waterman score: 373; 61.8% identity (71.9% similar) in 89 aa overlap (1-87:1-88)

               10        20        30        40        50        60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
       :.: ::::  ::::: :::::::: ::::::  .: :::::: :::.: . :.:::   :
NP_001 MNSQQQKQPCTPPPQPQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPK
               10        20        30        40        50        60

               70          80        90       100       110        
pF1KB8 VPEPGCTKVPEPGC--TKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVP
       ::::   ::::: :  : .: :.  :. .                               
NP_001 VPEPCQPKVPEP-CPSTVTPAPAQQKTKQK                              
               70         80                                       

>>NP_005978 (OMIM: 182265) cornifin-A [Homo sapiens]      (89 aa)
 initn: 362 init1: 362 opt: 373  Z-score: 242.8  bits: 50.4 E(85289): 8.7e-07
Smith-Waterman score: 373; 61.8% identity (71.9% similar) in 89 aa overlap (1-87:1-88)

               10        20        30        40        50        60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
       :.: ::::  ::::: :::::::: ::::::  .: :::::: :::.: . :.:::   :
NP_005 MNSQQQKQPCTPPPQPQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPK
               10        20        30        40        50        60

               70          80        90       100       110        
pF1KB8 VPEPGCTKVPEPGC--TKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVP
       ::::   ::::: :  : .: :.  :. .                               
NP_005 VPEPCQPKVPEP-CPSTVTPAPAQQKTKQK                              
               70         80                                       

>>XP_016855492 (OMIM: 208250,604283) PREDICTED: proteogl  (1270 aa)
 initn: 284 init1: 109 opt: 282  Z-score: 176.5  bits: 42.0 E(85289): 0.0043
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:307-472)

                                        10        20        30     
pF1KB8                          MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
                                     .: . : : .      :.:.   :.:  .:
XP_016 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
        280       290       300       310       320       330      

          40          50        60        70        80        90   
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
       :::::  .  : : :   : : :   : : :   : : :  :: : :   : : :  :: 
XP_016 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
         340       350       360       370       380       390     

           100       110       120       130       140       150   
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
         :  :: : :  ::   : . : :.    : : : . : :     : :.:   : :   
XP_016 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
          400        410       420       430       440       450   

                  160                                              
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK                                     
          :: :.:.  :.:.  :                                         
XP_016 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
           460       470       480       490       500       510   

>>NP_001121182 (OMIM: 208250,604283) proteoglycan 4 isof  (1270 aa)
 initn: 284 init1: 109 opt: 282  Z-score: 176.5  bits: 42.0 E(85289): 0.0043
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:307-472)

                                        10        20        30     
pF1KB8                          MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
                                     .: . : : .      :.:.   :.:  .:
NP_001 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
        280       290       300       310       320       330      

          40          50        60        70        80        90   
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
       :::::  .  : : :   : : :   : : :   : : :  :: : :   : : :  :: 
NP_001 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
         340       350       360       370       380       390     

           100       110       120       130       140       150   
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
         :  :: : :  ::   : . : :.    : : : . : :     : :.:   : :   
NP_001 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
          400        410       420       430       440       450   

                  160                                              
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK                                     
          :: :.:.  :.:.  :                                         
NP_001 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
           460       470       480       490       500       510   

>>XP_016855491 (OMIM: 208250,604283) PREDICTED: proteogl  (1311 aa)
 initn: 203 init1: 109 opt: 282  Z-score: 176.4  bits: 42.0 E(85289): 0.0044
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:348-513)

                                        10        20        30     
pF1KB8                          MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
                                     .: . : : .      :.:.   :.:  .:
XP_016 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
       320       330       340       350       360       370       

          40          50        60        70        80        90   
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
       :::::  .  : : :   : : :   : : :   : : :  :: : :   : : :  :: 
XP_016 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
        380       390       400       410       420       430      

           100       110       120       130       140       150   
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
         :  :: : :  ::   : . : :.    : : : . : :     : :.:   : :   
XP_016 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
         440       450        460       470       480       490    

                  160                                              
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK                                     
          :: :.:.  :.:.  :                                         
XP_016 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
          500       510       520       530       540       550    

>>NP_001121181 (OMIM: 208250,604283) proteoglycan 4 isof  (1311 aa)
 initn: 203 init1: 109 opt: 282  Z-score: 176.4  bits: 42.0 E(85289): 0.0044
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:348-513)

                                        10        20        30     
pF1KB8                          MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
                                     .: . : : .      :.:.   :.:  .:
NP_001 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
       320       330       340       350       360       370       

          40          50        60        70        80        90   
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
       :::::  .  : : :   : : :   : : :   : : :  :: : :   : : :  :: 
NP_001 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
        380       390       400       410       420       430      

           100       110       120       130       140       150   
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
         :  :: : :  ::   : . : :.    : : : . : :     : :.:   : :   
NP_001 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
         440       450        460       470       480       490    

                  160                                              
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK                                     
          :: :.:.  :.:.  :                                         
NP_001 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
          500       510       520       530       540       550    

>>NP_001290161 (OMIM: 208250,604283) proteoglycan 4 isof  (1361 aa)
 initn: 284 init1: 109 opt: 282  Z-score: 176.1  bits: 42.0 E(85289): 0.0045
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:398-563)

                                        10        20        30     
pF1KB8                          MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
                                     .: . : : .      :.:.   :.:  .:
NP_001 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
       370       380       390       400       410       420       

          40          50        60        70        80        90   
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
       :::::  .  : : :   : : :   : : :   : : :  :: : :   : : :  :: 
NP_001 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
        430       440       450       460       470       480      

           100       110       120       130       140       150   
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
         :  :: : :  ::   : . : :.    : : : . : :     : :.:   : :   
NP_001 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
         490       500        510       520       530       540    

                  160                                              
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK                                     
          :: :.:.  :.:.  :                                         
NP_001 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
          550       560       570       580       590       600    




169 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:02:36 2016 done: Sat Nov  5 21:02:37 2016
 Total Scan time:  5.580 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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