GENSCAN 1.0	Date run:  4-Nov-116	Time: 08:56:30

Sequence gi568815577f:33225056_33455546 : 230491 bp : 44.84% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4899   5161  263  0  2   73   92   102 0.355   6.23
 1.02 Intr +  18618  18659   42  1  0  110   99    22 0.909   3.71
 1.03 Intr +  19896  20019  124  1  1  110   73   -17 0.923  -1.36
 1.04 Intr +  21663  21835  173  0  2   58   79   132 0.980   8.89
 1.05 Intr +  23654  23799  146  0  2   82  115   130 0.996  15.10
 1.06 Intr +  27607  27775  169  0  1   95   91    64 0.995   6.92
 1.07 Intr +  29620  29852  233  2  2   37   55   148 0.923   3.89
 1.08 Intr +  32131  32241  111  0  0   38   93    78 0.641   3.88
 1.09 Term +  37738  38445  708  0  0  116   41   331 0.541  24.71
 1.10 PlyA +  39125  39130    6                               1.05

 2.00 Prom +  39981  40020   40                             -10.35
 2.01 Init +  41411  41459   49  1  1   75   94    67 0.638   5.14
 2.02 Intr +  43339  43462  124  2  1   56   98    35 0.537   0.94
 2.03 Intr +  51547  51698  152  1  2   48   72    78 0.365   2.01
 2.04 Intr +  54697  54863  167  2  2   64  116    99 0.951   9.98
 2.05 Intr +  58039  58186  148  0  1   65  115    56 0.775   5.81
 2.06 Intr +  63049  63206  158  2  2   46   92   119 0.053   7.83
 2.07 Intr +  71129  71252  124  1  1  123   21    99 0.964   6.86
 2.08 Intr +  73636  73879  244  2  1   25   80   169 0.531   6.36
 2.09 Intr +  74889  74911   23  0  2  121   62   -26 0.262  -4.71
 2.10 Intr +  77027  77142  116  0  2   68   72    74 0.629   3.97
 2.11 Term +  83130  83267  138  2  0  132   41    48 0.823   2.46
 2.12 PlyA +  83815  83820    6                               1.05

 3.00 Prom +  86204  86243   40                              -5.86
 3.01 Init + 100001 100076   76  1  1   49   94   190 0.501  14.95
 3.02 Intr + 100167 100393  227  1  2  -12   30   182 0.671   0.10
 3.03 Intr + 109663 109878  216  0  0   61   33   153 0.348   5.80
 3.04 Intr + 112941 113026   86  2  2   24  102    56 0.368  -0.78
 3.05 Intr + 115944 116119  176  0  2   85  116    29 0.761   4.98
 3.06 Intr + 118213 118367  155  2  2   81   74    42 0.417   1.89
 3.07 Term + 130261 130494  234  0  0   54   47   176 0.684   6.42
 3.08 PlyA + 134738 134743    6                               1.05

 4.04 PlyA - 135813 135808    6                               1.05
 4.03 Term - 143814 143667  148  2  1   68   53   134 0.603   5.27
 4.02 Intr - 158330 158117  214  0  1   70   69   130 0.243   7.07
 4.01 Init - 160915 160870   46  1  1   86   58    48 0.623   0.45
 4.00 Prom - 175201 175162   40                              -1.96

 5.00 Prom + 177285 177324   40                              -4.16
 5.01 Init + 178489 178561   73  0  1   78   99   271 0.974  26.43
 5.02 Intr + 182871 182953   83  1  2    8   59    68 0.013  -4.74
 5.03 Intr + 186390 186516  127  2  1   41   76   106 0.301   4.95
 5.04 Intr + 189833 189965  133  0  1  103   66    97 0.981   8.70
 5.05 Intr + 196425 196630  206  0  2   99   95   125 0.940  13.14
 5.06 Intr + 207659 207816  158  0  2   78   94    97 0.630   9.03
 5.07 Term + 211773 211907  135  2  0   27   46   116 0.095  -0.68
 5.08 PlyA + 212141 212146    6                              -1.75

 6.03 PlyA - 212222 212217    6                              -0.45
 6.02 Term - 212311 212245   67  0  1   62   42    73 0.399  -2.49
 6.01 Intr - 214242 214159   84  2  0   95  115   101 0.477  12.44

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  16868  16922   55  1  1   76  106     3 0.888   2.42


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:33225056_33455546|GENSCAN_predicted_peptide_1|656_aa
XPGLGARTRTKDASSRRVGIPPASRTVPRAQPADHHPAARAAFVPRPPLLSERPPARRIL
TASVGSQSRARLGPEASISREPQGESCKVYISLVFGISYDSPDYTDESCTFKISLRNFRS
ILSWELKNHSIVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVL
EGFSGNTTLFSCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVI
EEQSEGIVKKHKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLL
PPGQESVFNQKIFESTYDLEAPPLRIVPPFQIEPVYILHALIDALCLPKMYKTKLHPDQG
FSGSPGAVSWAIGHSYLTQTESLQMRQPPFGQGQFLMCPELVPANGFVVSLTSRMEPQTF
LNFHNFLAWPFPNLPPLEAMDMVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTM
HGLTVRPLGQASATSTESQLIDPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRK
SPLQDPFPEEDYSSTEGSGGRITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDP
EDPDNVQSNHLLASGEGTQPTFPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR

>gi568815577f:33225056_33455546|GENSCAN_predicted_CDS_1|1971_bp
nngccggggctcggcgcgcgcacccgcactaaagacgcttcttcccggcgggtaggaatc
ccgccggcgagccgaacagttccccgagcgcagcccgcggaccaccacccggccgcacgg
gccgcttttgtcccccgcccgccgcttctgtccgagaggccgcccgcgaggcgcatcctg
accgcgagcgtcgggtcccagagccgggcgcggctggggcccgaggctagcatctctcgg
gagccgcaaggcgagagctgcaaagtgtatatcagcctcgtgtttggtatttcatatgat
tcgcctgattacacagatgaatcttgcactttcaagatatcattgcgaaatttccggtcc
atcttatcatgggaattaaaaaaccactccattgtaccaactcactatacattgctgtat
acaatcatgagtaaaccagaagatttgaaggtggttaagaactgtgcaaataccacaaga
tcattttgtgacctcacagatgagtggagaagcacacacgaggcctatgtcaccgtccta
gaaggattcagcgggaacacaacgttgttcagttgctcacacaatttctggctggccata
gacatgtcttttgaaccaccagagtttgagattgttggttttaccaaccacattaatgtg
atggtgaaatttccatctattgttgaggaagaattacagtttgatttatctctcgtcatt
gaagaacagtcagagggaattgttaagaagcataaacccgaaataaaaggaaacatgagt
ggaaatttcacctatatcattgacaagttaattccaaacacgaactactgtgtatctgtt
tatttagagcacagtgatgagcaagcagtaataaagtctcccttaaaatgcaccctcctt
ccacctggccaggaatcagtttttaatcagaaaatctttgaatctacctatgacctggaa
gcccccccacttcgaattgtcccacctttccagattgaaccagtgtacatcttacatgca
ttgattgatgccttatgtctccctaaaatgtataaaaccaagctgcaccctgaccaaggg
ttctcgggatctcctggggctgtgtcatgggccattggtcactcatatttgactcagact
gaatctcttcaaatgaggcagcccccttttgggcaagggcagttccttatgtgtccggag
ttggttcctgccaatgggttcgtggtctcgctgacttcaagaatggagccgcagaccttc
ctgaattttcataactttttagcctggccatttcctaacctgccaccgttggaagccatg
gatatggtggaggtcatttacatcaacagaaagaagaaagtgtgggattataattatgat
gatgaaagtgatagcgatactgaggcagcgcccaggacaagtggcggtggctataccatg
catggactgactgtcaggcctctgggtcaggcctctgccacctctacagaatcccagttg
atagacccggagtccgaggaggagcctgacctgcctgaggttgatgtggagctccccacg
atgccaaaggacagccctcagcagttggaactcttgagtgggccctgtgagaggagaaag
agtccactccaggacccttttcccgaagaggactacagctccacggaggggtctgggggc
agaattaccttcaatgtggacttaaactctgtgtttttgagagttcttgatgacgaggac
agtgacgacttagaagcccctctgatgctatcgtctcatctggaagagatggttgaccca
gaggatcctgataatgtgcaatcaaaccatttgctggccagcggggaagggacacagcca
acctttcccagcccctcttcagagggcctgtggtccgaagatgctccatctgatcaaagt
gacacttctgagtcagatgttgaccttggggatggttatataatgagatga

>gi568815577f:33225056_33455546|GENSCAN_predicted_peptide_2|480_aa
MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLRIF
QDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQVEV
LADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRNLE
PWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLGCF
ALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDS
ESGKQNPEKRSYYPGHSTEKQKNGKYEWLGYKPEKSSCKRRLASWKLAQVNAAAVPIEKG
YLEAKYIQYGGSSSLLFVVMCAGVMVLARKISFLRGSHLHEASCHIGEVTWLGPEDASSS
QQRTGNRGSQSNSNRLSGINFSTSQKHFGPQIPKGTLFFILENTMPTYQNKGQIGAFASK

>gi568815577f:33225056_33455546|GENSCAN_predicted_CDS_2|1443_bp
atggcgtggagccttgggagctggctgggtggctgcctgctggtgtcagcattgggaatg
gtaccacctcccgaaaatgtcagaatgaattctgttaatttcaagaacattctacagtgg
gagtcacctgcttttgccaaagggaacctgactttcacagctcagtacctaaggatattc
caagataaatgcatgaatactaccttgacggaatgtgatttctcaagtctttccaagtat
ggtgaccacaccttgagagtcagggctgaatttgcagatgagcattcagactgggtaaac
atcaccttctgtcctgtggatgacaccattattggaccccctggaatgcaagtagaagta
cttgctgattctttacatatgcgtttcttagcccctaaaattgagaatgaatacgaaact
tggactatgaagaatgtgtataactcatggacttataatgtgcaatactggaaaaacggt
actgatgaaaagtttcaaattactccccagtatgactttgaggtcctcagaaacctggag
ccatggacaacttattgtgttcaagttcgagggtttcttcctgatcggaacaaagctggg
gaatggagtgagcctgtctgtgagcaaacaacccatgacgaaacggtcccctcctggatg
gtggccgtcatcctcatggcctcggtcttcatggtctgcctggcactcctcggctgcttc
gccttgctgtggtgcgtttacaagaagacaaagtacgccttctcccctaggaattctctt
ccacagcacctgaaagagtttttgggccatcctcatcataacacacttctgtttttctcc
tttccattgtcggatgagaatgatgtttttgacaagctaagtgtcattgcagaagactct
gagagcggcaagcagaatcctgaaaaaagaagttattatccagggcacagtacagagaaa
caaaagaatggaaaatatgagtggttaggatacaagcctgaaaaatcaagctgcaagcgt
agattagcaagctggaagcttgcacaggtgaatgcggcagctgtgccaatagaaaaggga
tacctggaagccaagtacatccaatatggaggttcctcctcccttctctttgtcgtcatg
tgtgcaggtgtcatggtgctggccaggaagatttctttcctgaggggttcacacttgcat
gaagcaagctgccatattggagaagtcacatggctaggacctgaggatgcctcctccagc
caacaacgaacagggaatcgaggttctcaatccaacagcaacaggctctctggcatcaat
ttttccacttctcagaaacactttggcccacaaattcccaaaggaaccttgttcttcatt
ctggaaaacacgatgccaacatatcagaataaaggacagataggagcttttgcttcaaag
tga

>gi568815577f:33225056_33455546|GENSCAN_predicted_peptide_3|389_aa
MMVVLLGATTLVLVAVAPWVLSAAADAQSGKPSVHFAAPKIKPDLGSQINQEKVVFWVLS
CRLPVAVYGSSGAPGSHPREMAVPELCVEFDSFRESTAAPLCQVMRRVIQVCEGQLDVQT
EGTGAISGYPTTQFMTQVVIQGDITSYDAVNTEGKAAEIHYTFPPLQWEMGQGKLFAKYA
SNKSLISKELKQSTTKPKSIKRTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR
AEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTY
SLVIWKNSSGVEYFSEQPLKNLLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKYS
SQTSQDSGNYSNEDESESKTSEELQQDFV

>gi568815577f:33225056_33455546|GENSCAN_predicted_CDS_3|1170_bp
atgatggtcgtcctcctgggcgcgacgaccctagtgctcgtcgccgtggcgccatgggtg
ttgtccgcagccgcagacgcccagtctgggaaaccttcggtccactttgccgcgccaaag
attaaacccgacctgggctcgcaaatcaaccaggagaaagtggtgttctgggtcctctct
tgccgcttgcctgtggccgtgtacgggtcctcgggagcgcccgggtcccacccccgtgaa
atggcggtgccagagctttgtgtcgagtttgattctttccgggaaagtaccgcggctccg
ctgtgtcaagtgatgcgcagggtgatccaggtgtgtgaggggcagctggatgtccagact
gagggcactggtgccatcagtggctatcctaccactcaattcatgacccaggtggtgatc
cagggtgatatcaccagttatgatgcagttaacacagaggggaaagctgctgagatacac
tatactttcccacccctgcagtgggagatggggcaggggaaactatttgcaaaatatgca
tccaacaagagcttaatatccaaggaactcaaacaatcaacaacaaaacccaaatccatc
aaaagaactgggatggataattggataaaattgtctgggtgtcagaatattactagtacc
aaatgcaacttttcttcactcaagctgaatgtttatgaagaaattaaattgcgtataaga
gcagaaaaagaaaacacttcttcatggtatgaggttgactcatttacaccatttcgcaaa
gctcagattggtcctccagaagtacatttagaagctgaagataaggcaatagtgatacac
atctctcctggaacaaaagatagtgttatgtgggctttggatggtttaagctttacatat
agcttagttatctggaaaaactcttcaggtgtagaatatttctctgaacagccattgaag
aatcttctgctttcaacttctgaggaacaaatcgaaaaatgtttcataattgaaaatata
agcacaattgctacagtagaagaaactaatcaaactgatgaagatcataaaaaatacagt
tcccaaactagccaagattcaggaaattattctaatgaagatgaaagcgaaagtaaaaca
agtgaagaactacagcaggactttgtatga

>gi568815577f:33225056_33455546|GENSCAN_predicted_peptide_4|135_aa
MGFLHVEAGLELLTSVWVTWRFLWLTASDFSINFVAKAPCTVLCMVRTVWFVSDSGAFPD
AGLSVLKLGKPRVNQDESAALPRALDKPAAGDILTTQPHLHYGLYPVPKLLSKKNEKNED
MLTIRRRRMGREEFC

>gi568815577f:33225056_33455546|GENSCAN_predicted_CDS_4|408_bp
atggggtttctccatgttgaggctggtctcgaactgctgacctcagtctgggtcacgtgg
cgcttcctgtggctcactgcctctgacttttcaatcaactttgtggctaaagcaccatgc
actgtgctttgcatggtccggactgtctggtttgtcagcgactcaggggcttttccagat
gcgggactttcagtgctgaaactgggaaagcccagggtaaaccaggatgagtcagcggcc
ctgcctcgtgctctggataagcctgctgctggagacatcctgaccactcagccccacctg
cattatggcttgtacccagttcccaagctcttgtccaagaagaatgagaagaatgaggat
atgctgacaattcgaaggcggaggatgggcagagaagaattttgttga

>gi568815577f:33225056_33455546|GENSCAN_predicted_peptide_5|304_aa
MRPTLLWSLLLLLGVFAAAAAAPPVFLEENNFLVMAEESENAFLFLICKVMERWEMVNRR
VEGGIMVPKDVHALILRVREPGNVLPDVQKGLRRYPLSQLPAPQHPKIRLYNAEQVLSWE
PVALSNSTRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFN
VTLRLRAELGALHSAWVTMPWFQHYRNASTELQQVILISVGTFSLLSVLAGACFFLVLKY
RGLIKYWFHTPPSIPLQIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDV
LQTL

>gi568815577f:33225056_33455546|GENSCAN_predicted_CDS_5|915_bp
atgcgaccgacgctgctgtggtcgctgctgctgctgctcggagtcttcgccgccgccgcc
gcggccccgccagtatttcttgaagagaacaatttcctggttatggctgaggaatcagaa
aatgcctttttatttctcatctgcaaggtgatggagagatgggagatggtgaacaggcgt
gtggagggcggaataatggtccccaaagatgtccacgccctcatcctcagagtccgtgaa
cctgggaatgtgctgcctgacgtacaaaagggactccgcagataccctctttcccagctg
cccgctcctcagcacccgaagattcgcctgtacaacgcagagcaggtcctgagttgggag
ccagtggccctgagcaatagcacgaggcctgttgtctaccaagtgcagtttaaatacacc
gacagtaaatggttcacggccgacatcatgtccataggggtgaattgtacacagatcaca
gcaacagagtgtgacttcactgccgccagtccctcagcaggcttcccaatggatttcaat
gtcactctacgccttcgagctgagctgggagcactccattctgcctgggtgacaatgcct
tggtttcaacactatcggaatgcctccactgagcttcagcaagtcatcctgatctccgtg
ggaacattttcgttgctgtcggtgctggcaggagcctgtttcttcctggtcctgaaatat
agaggcctgattaaatactggtttcacactccaccaagcatcccattacagatagaagag
tatttaaaagacccaactcagcccatcttagaggccttggacaaggacagctcaccaaag
gatgacgtctgggactctgtgtccattatctcgtttccggaaaaggagcaagaagatgtt
ctccaaacgctttga

>gi568815577f:33225056_33455546|GENSCAN_predicted_peptide_6|50_aa
XCILHSSLATILLPNRRSSSVSDFLNGLRLCDLPKGLRLICQSQDDDQVF

>gi568815577f:33225056_33455546|GENSCAN_predicted_CDS_6|153_bp
nnatgtatcctccactcctcgctggccaccatcctgctgcccaacagaagaagctcttct
gtctccgatttcctgaacggtctaaggttgtgtgacctgcccaaggggctccggctcatt
tgccaaagtcaagacgacgaccaggtcttctga