GENSCAN 1.0	Date run:  4-Nov-116	Time: 09:26:06

Sequence gi568815592r:111561742_111820051 : 258310 bp : 43.31% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.16 Intr -   1298   1224   75  2  0   96   92    23 0.085   3.21
 1.15 Intr -   4819   4703  117  1  0   92  101   159 0.992  18.26
 1.14 Intr -   5951   5883   69  2  0  103   95    54 0.968   6.98
 1.13 Intr -  11242  11154   89  2  2   60   92    56 0.843   2.89
 1.12 Intr -  14080  13902  179  0  2  101   85     0 0.808   0.56
 1.11 Intr -  18648  18456  193  1  1  106  100    76 0.916   9.15
 1.10 Intr -  30353  29517  837  0  0   95  103   314 0.117  24.96
 1.09 Intr -  36314  36114  201  0  0  111   51    24 0.035   0.26
 1.08 Intr -  43587  43379  209  2  2   76   25    68 0.049  -1.98
 1.07 Intr -  44210  44035  176  2  2   90  115    59 0.600   7.54
 1.06 Intr -  63424  63384   41  2  2  140   87    11 0.080   4.14
 1.05 Intr -  68301  68166  136  0  1   38   20   104 0.019  -1.26
 1.04 Intr -  68398  68321   78  1  0  107  -20   129 0.067   3.75
 1.03 Intr -  75171  74099 1073  1  2   67  -33   347 0.269  10.45
 1.02 Intr -  75384  75217  168  1  0   19   47   112 0.139   0.12
 1.01 Init -  83337  83229  109  0  1   54  109    74 0.307   6.49
 1.00 Prom -  99103  99064   40                              -3.66

 2.12 PlyA -  99575  99570    6                               1.05
 2.11 Term - 100206  99998  209  1  2  110   48   242 0.431  19.90
 2.10 Intr - 112889 112758  132  0  0   89  110   106 0.964  13.52
 2.09 Intr - 132787 132634  154  1  1   97   86   160 0.912  16.35
 2.08 Intr - 132963 132887   77  1  2   78   96    60 0.999   5.03
 2.07 Intr - 134715 134536  180  1  0   59   53   268 0.714  20.24
 2.06 Intr - 138527 138363  165  0  0   84   59    46 0.598   1.23
 2.05 Intr - 141293 141144  150  0  0   71   91   136 0.999  12.33
 2.04 Intr - 142361 142258  104  1  2   53  116    86 0.999   7.72
 2.03 Intr - 147416 147237  180  1  0   65   71    87 0.638   3.68
 2.02 Intr - 152702 152606   97  0  1   95   99    91 0.998   9.97
 2.01 Init - 158310 158064  247  0  1   50  115   289 0.978  25.56
 2.00 Prom - 165145 165106   40                              -4.16

 3.00 Prom + 165283 165322   40                              -5.16
 3.01 Init + 169024 169168  145  0  1   47   86    45 0.049   0.49
 3.02 Intr + 174634 174781  148  2  1   40   95    66 0.739   1.79
 3.03 Intr + 176631 176735  105  0  0  111   47    67 0.895   4.23
 3.04 Term + 177934 177988   55  1  1  136   43    38 0.532   1.13
 3.05 PlyA + 178425 178430    6                               1.05

 4.00 Prom + 194804 194843   40                              -3.56
 4.01 Init + 195874 195930   57  0  0   78   80    47 0.646   4.21
 4.02 Intr + 197359 197394   36  0  0   95   94     3 0.356   0.06
 4.03 Intr + 201110 201149   40  1  1  102   80    23 0.240   0.70
 4.04 Intr + 205485 205513   29  1  2   67  110    20 0.053  -0.07
 4.05 Intr + 212006 212029   24  1  0  112   82    26 0.068   2.62
 4.06 Term + 222018 222137  120  2  0   65   54    57 0.024  -1.53
 4.07 PlyA + 223044 223049    6                               1.05

 5.03 PlyA - 223941 223936    6                               1.05
 5.02 Term - 244261 244173   89  2  2  101   54    80 0.548   3.72
 5.01 Init - 256931 256874   58  2  1   38   78    66 0.190   2.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  68398  68315   84  1  0  107   39   137 0.873   8.35
S.002 Init - 114783 114678  106  0  1   36   85    47 0.811  -0.42


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:111561742_111820051|GENSCAN_predicted_peptide_1|1250_aa
MTQLLRKQVADTTGTCELGTAMKLDWGSGDLTPVTPDAEKAFDKIQQPFMLKTLNKLGID
GTYLKIIRAIYDKPTANIILNGKKLEAFPSKTVLEVLARAIRQEKEIKDIQSGKEEVKLS
LFADDMIVYLENPIVSAQNLLKLISNFSNVSGYQINVQKSQAFLYTNKRQTESQIMSELP
FTVASKRIKYLGIQLTRDVKELFKENYKPLLNEIKEDTNKWKNIPCSWIGRINIVKRAIL
PKIIYRFNVIPFKLPKTFFTELEKTTLKFMWNQKRAHIAKTILSQKNKAGGITLSDFKLY
YKTTVTKTAWYWYQNRDIDQWNRTEPSEIISHIYNHLIFDKPEKNKQWGKDSLFNKWCWE
NWLAICRELKLDPFLTPYTKINSRWIKHLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKT
PKAMATKAKIDKWDLIKLKSFCTAKETTIRGTTIPENSFGAFYWIPYLHLAISELMGPDL
EMAFCSNSIDQNLLHAPPSSKKSGEYFLFVCLKAEMELVATSLSRDMYTEGCCLKGDFEQ
RLPRLRRNLHTASTSCFRACSSTYLGPEKVEGDEKPPRADYPPGPVCLSVVDLRGEKNQQ
HIFGPGSSAELCAGCEPPPGPSPQPPSSPPSLALDGAFGNKGEKCQNLILEANQASCDFQ
VQDGFADEPEMTQGTASMGAPRVLVGRSPVPLRSQCLLPGSWLENRAFPLQSRHRPLVET
GAKVMPELQAQTRMNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSL
SAPTMLHNSSGDFSQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFP
SGCSAVSEPASESVVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNAS
ADSLGGSQEMVQRPQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDL
PRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSPDHQVPYGHDYPRAAYQ
QVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDHEERPAQRDCSFPGLPRHQDQPHHQ
PPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITY
SMDTAMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYK
QDVEGAESQLDEDEHGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKK

>gi568815592r:111561742_111820051|GENSCAN_predicted_CDS_1|3750_bp
atgactcaactgctgagaaagcaagtcgctgatacaacagggacttgtgagctgggaaca
gccatgaaactggactggggatctggggacctgactcctgtcacaccagatgcagaaaag
gcctttgacaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgat
gggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactg
aatgggaaaaaactggaagcattcccttcgaaaactgtgttggaagttctggccagggca
atcaggcaggagaaagaaataaaggatattcaatcaggaaaagaggaagtcaaattgtcc
ctatttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcccaaaatctc
cttaagctgataagcaacttcagcaatgtctcaggataccaaatcaatgtgcaaaaatca
caagcattcttatacaccaataagagacaaacagagagccaaatcatgagtgaactccca
ttcacagttgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaa
gaactcttcaaggagaactacaaaccactgctcaatgaaataaaagaggacacaaacaaa
tggaagaacattccatgttcatggataggaagaatcaatatcgtgaaaagggccatactg
cccaagataatttatagattcaatgtcatccccttcaagctaccaaagactttcttcaca
gaattggaaaaaactactttaaagttcatgtggaaccaaaaaagagcccacattgccaag
acaatcctaagccaaaagaacaaagctggaggcatcacactatctgacttcaagctatac
tacaagactacagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaa
tggaacagaacagagccctcagaaataatatcacacatctacaaccatctgatctttgac
aaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaa
aactggctagccatatgtagagagctgaaactggatcccttccttacaccttatacaaaa
attaattcaagatggattaaacacttaaatgttagacctaaaaccataaaaaccctagaa
gaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaaca
ccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagc
ttctgcacagcaaaagaaactaccatcagaggcaccaccatccccgagaactcctttgga
gccttctactggatcccctaccttcatctggccatcagtgaactgatggggccagatctg
gaaatggctttctgctcaaattcaattgaccagaacttgttgcatgccccacctagcagc
aagaagtctggggaatattttctcttcgtgtgcttgaaagcagaaatggaattggtggca
actagtctctccagggacatgtacacggaagggtgttgcctgaagggagattttgagcag
aggcttcctaggctccgtagaaatttgcatacagcttccacttcctgcttcagagcctgt
tcttctacttacctgggcccggagaaggtggagggagacgagaagccgccgagagccgac
taccctccgggcccagtctgtctgtccgtggtggatctaaggggggaaaaaaatcaacag
cacatttttgggccaggaagttctgctgagctctgtgctggctgtgagccgcctcccggc
ccctctccgcagccgccctccagccctcccagcctggcgctggacggagcctttgggaac
aagggggagaaatgccagaacttgatcttagaagctaatcaagcttcttgtgactttcaa
gttcaagatggatttgctgatgagcctgagatgacccagggcactgccagcatgggggct
cccagggtcctagttggcaggtctcctgttcccctgaggagtcagtgcttgctccctggg
tcatggctggaaaacagggcttttccacttcaatccaggcaccgccctctggtagagact
ggagcaaaggtcatgccagagttacaagcacaaactagaatgaaccgaagcattcctgtg
gaggttgatgaatcagaaccatacccaagtcagttgctgaaaccaatcccagaatattcc
ccggaagaggaatcagaaccacctgctccaaatataaggaacatggcacccaacagcttg
tctgcacccacaatgcttcacaattcctccggagacttttctcaagctcactcaaccctg
aaacttgcaaatcaccagcggcctgtatcccggcaggtcacctgcctgcgcactcaagtt
ctggaggacagtgaagacagtttctgcaggagacacccaggcctgggcaaagctttccct
tctgggtgctctgcagtcagcgagcctgcgtctgagtctgtggttggagccctccctgca
gagcatcagttttcatttatggaaaaacgtaatcaatggctggtatctcagctttcagcg
gcttctcctgacactggccatgactcagacaaatcagaccaaagtttacctaatgcctca
gcagactccttgggcggtagccaggagatggtgcaacggccccagcctcacaggaaccga
gcaggcctggatctgccaaccatagacacgggatatgattcccagccccaggatgtcctg
ggcatcaggcagctggaaaggcccctgcccctcacctccgtgtgttacccccaggacctc
cccagacctctcaggtccagggagttccctcagtttgaacctcagaggtatccagcatgt
gcacagatgctgcctcccaatctttccccacatgctccatggaactatcattaccattgt
cctggaagtcccgatcaccaggtgccatatggccatgactaccctcgagcagcctaccag
caagtgatccagccggctctgcctgggcagcccctgcctggagccagtgtgagaggcctg
caccctgtgcagaaggttatcctgaattatcccagcccctgggaccacgaagagaggccc
gcacagagagactgctcctttccggggcttccaaggcaccaggaccagccacatcaccag
ccacctaatagagctggtgctcctggggagtccttggagtgccctgcagagctgagacca
caggttccccagcctccgtccccagctgctgtgcctagaccccctagcaaccctccagcc
agaggaactctaaaaacaagcaatttgccagaagaattgcggaaagtctttatcacttat
tcgatggacacagctatggaggtggtgaaattcgtgaactttttgttggtaaatggcttc
caaactgcaattgacatatttgaggatagaatccgaggcattgatatcattaaatggatg
gagcgctaccttagggataagaccgtgatgataatcgtagcaatcagccccaaatacaaa
caggacgtggaaggcgctgagtcgcagctggacgaggatgagcatggcttacatactaag
tacattcatcgaatgatgcagattgagttcataaaacaaggaagcatgaatttcagattc
atccctgtgctcttcccaaatgctaagaag

>gi568815592r:111561742_111820051|GENSCAN_predicted_peptide_2|564_aa
MGCVQCKDKEATKLTEERDGSLNQSSGYRYGTDPTPQHYPSFGVTSIPNYNNFHAAGGQG
LTVFGGVNSSSHTGTLRTRGGTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSTKKGG
KEGPEPQEIRFAGRSDLLEGNHVVDCRLVEGSADTQWMSEPQRHIHGLPDVNGKRWYFGK
LGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGY
YITTRAQFETLQQLVQHYSERAAGLCCRLVVPCHKGMPRLTDLSVKTKDVWEIPRESLQL
IKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVV
SEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRS
ANILVGNGLICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFG
ILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMIHCWKKDPEERPTF
EYLQSFLEDYFTATEPQYQPGENL

>gi568815592r:111561742_111820051|GENSCAN_predicted_CDS_2|1695_bp
atgggctgtgtgcaatgtaaggataaagaagcaacaaaactgacggaggagagggacggc
agcctgaaccagagctctgggtaccgctatggcacagaccccacccctcagcactacccc
agcttcggtgtgacctccatccccaactacaacaacttccacgcagccgggggccaagga
ctcaccgtctttggaggtgtgaactcttcgtctcatacggggaccttgcgtacgagagga
ggaacaggagtgacactctttgtggccctttatgactatgaagcacggacagaagatgac
ctgagttttcacaaaggagaaaaatttcaaatattgaacagctcgaccaaaaaaggagga
aaagaaggtcctgagccccaggagatcagatttgctgggaggtctgatttgcttgagggc
aatcatgtcgttgactgcaggctggtggaaggttctgcagatactcagtggatgtcagag
ccgcagcgccacatccatggcctccccgatgttaatgggaagaggtggtactttggaaaa
cttggccgaaaagatgctgagcgacagctattgtcctttggaaacccaagaggtaccttt
cttatccgcgagagtgaaaccaccaaaggtgcctattcactttctatccgtgattgggat
gatatgaaaggagaccatgtcaaacattataaaattcgcaaacttgacaatggtggatac
tacattaccacccgggcccagtttgaaacacttcagcagcttgtacaacattactcagag
agagctgcaggtctctgctgccgcctagtagttccctgtcacaaagggatgccaaggctt
accgatctgtctgtcaaaaccaaagatgtctgggaaatccctcgagaatccctgcagttg
atcaagagactgggaaatgggcagtttggggaagtatggatgggtacctggaatggaaac
acaaaagtagccataaagactcttaaaccaggcacaatgtcccccgaatcattccttgag
gaagcgcagatcatgaagaagctgaagcacgacaagctggtccagctctatgcagtggtg
tctgaggagcccatctacatcgtcaccgagtatatgaacaaaggaagtttactggatttc
ttaaaagatggagaaggaagagctctgaaattaccaaatcttgtggacatggcagcacag
gtggctgcaggaatggcttacatcgagcgcatgaattatatccatagagatctgcgatca
gcaaacattctagtggggaatggactcatatgcaagattgctgacttcggattggcccga
ttgatagaagacaatgagtacacagcaagacaaggtgcaaagttccccatcaagtggacg
gcccccgaggcagccctgtacgggaggttcacaatcaagtctgacgtgtggtcttttgga
atcttactcacagagctggtcaccaaaggaagagtgccatacccaggcatgaacaaccgg
gaggtgctggagcaggtggagcgaggctacaggatgccctgcccgcaggactgccccatc
tctctgcatgagctcatgatccactgctggaaaaaggaccctgaagaacgccccactttt
gagtacttgcagagcttcctggaagactactttaccgcgacagagccccagtaccaacct
ggtgaaaacctgtaa

>gi568815592r:111561742_111820051|GENSCAN_predicted_peptide_3|150_aa
MFLPDVDIQSSIFLPSLPSFYKNNQPEKKRKEKQKRGLLFMTSKEKQEGLEQSEDVNSCS
STSKSHQSAALAEALCPSTKQNWPVPESSDGAALEDSRGLGLKAYNLNSHLFLESGAPKA
HGCSQAKLLTGEGVSEVYKAMIKMKGFYFE

>gi568815592r:111561742_111820051|GENSCAN_predicted_CDS_3|453_bp
atgtttcttcctgatgttgatatccaatcaagtatcttcctaccctccttaccctcattc
tataaaaacaatcaaccagagaaaaagagaaaagaaaaacaaaaacgtgggcttctattc
atgaccagcaaagagaaacaggaaggcttagaacagtcagaggatgtaaactcttgctca
tccaccagcaagagtcatcaatcggcagctctggcagaagcactttgtcccagcactaag
cagaactggcctgtccctgagagctccgatggagctgccttagaagattccaggggtctt
ggactgaaggcttacaacctcaactcacatctgtttttggagtcaggtgcccccaaggct
catggctgcagccaggcaaagctgctcactggagagggggtgtcagaagtgtacaaagcc
atgattaagatgaagggtttctattttgagtag

>gi568815592r:111561742_111820051|GENSCAN_predicted_peptide_4|101_aa
MASHIRKEMDAMKGDIGQELLGLYPTLDHLQVTKKVLAFKWLDTGILKNKSKNQNPFNIY
IQCSWAHGSTPSWEWGRDSPRFCSVLTCNIRINQELVRAVS

>gi568815592r:111561742_111820051|GENSCAN_predicted_CDS_4|306_bp
atggcatcccacatcaggaaggagatggatgctatgaagggagacattggtcaagagctc
cttggcttatacccaacacttgatcatttgcaggtaactaaaaaagtcctcgcattcaaa
tggctggacacgggtatattgaaaaacaagagtaaaaatcagaatcccttcaacatctat
attcagtgctcatgggcacatggcagcacgcccagctgggagtgggggcgggacagtcca
aggttttgcagtgtgctgacctgcaacattcgcatcaaccaggagcttgtaagagctgtc
agctga

>gi568815592r:111561742_111820051|GENSCAN_predicted_peptide_5|48_aa
MTAASEKASQQWQQQGNRPGSSTASRAVVGSEEKEKTRKSRNTLEELL

>gi568815592r:111561742_111820051|GENSCAN_predicted_CDS_5|147_bp
atgacagcagcatcggagaaagctagtcagcagtggcagcagcaaggcaacagaccaggg
tcttcaactgcctcaagagctgttgtgggctcagaagaaaaggaaaagactaggaaaagc
agaaacacgctggaggaactactgtga