GENSCAN 1.0	Date run:  5-Nov-116	Time: 20:57:36

Sequence gi568815594f:9682030_9883460 : 201431 bp : 46.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   9529   9566   38  0  2  106   97    78 0.876   7.99
 1.02 Intr +  14619  14763  145  0  1   47   64   143 0.301   8.08
 1.03 Intr +  15992  16122  131  1  2  101   37   140 0.923   9.69
 1.04 Intr +  16192  16454  263  1  2   92   95   288 0.923  27.03
 1.05 Intr +  17316  17465  150  1  0   37   71   196 0.648  12.93
 1.06 Term +  19328  19350   23  0  2   44   34    51 0.195  -6.23
 1.07 PlyA +  19894  19899    6                               1.05

 2.10 PlyA -  20222  20217    6                              -0.45
 2.09 Term -  21849  21601  249  0  0  123   49   172 0.994  12.50
 2.08 Intr -  22930  22855   76  0  1   97   68   117 0.947  10.12
 2.07 Intr -  24062  23945  118  0  1   65   46   134 0.942   6.42
 2.06 Intr -  25720  25610  111  2  0   38   66   101 0.747   3.25
 2.05 Intr -  27950  27808  143  1  2   91   46    82 0.877   4.30
 2.04 Intr -  28780  28670  111  0  0   82   82   115 0.992   9.79
 2.03 Intr -  44361  44265   97  1  1   87   44   107 0.048   5.27
 2.02 Intr -  45553  45422  132  2  0   74   87    31 0.511   2.22
 2.01 Init -  48368  48344   25  2  1   59   80    52 0.231   0.04
 2.00 Prom -  51562  51523   40                              -2.86

 3.00 Prom +  52360  52399   40                              -6.86
 3.01 Init +  53805  54040  236  2  2   71   88   142 0.544  10.11
 3.02 Term +  72825  73209  385  0  1   92   47   333 0.734  23.96
 3.03 PlyA +  75275  75280    6                               1.05

 4.00 Prom +  75774  75813   40                              -7.76
 4.01 Init +  79509  80331  823  2  1   65   38   304 0.664  17.98
 4.02 Intr +  81489  81548   60  1  0   86  110    14 0.541   2.11
 4.03 Intr +  87362  87404   43  0  1   59   64    25 0.001  -5.50
 4.04 Intr +  99682  99868  187  1  1   67   89   168 0.919  14.49
 4.05 Term +  99977 101434 1458  1  0   -2   37  2623 0.747 238.91
 4.06 PlyA + 101620 101625    6                               1.05

 5.00 Prom + 102729 102768   40                              -6.16
 5.01 Init + 106316 106323    8  1  2  114   91     0 0.118   3.40
 5.02 Intr + 113773 113945  173  1  2   67   55    36 0.016  -2.21
 5.03 Intr + 135112 135217  106  2  1   94   95    63 0.912   6.87
 5.04 Term + 136097 136277  181  2  1   76   33   124 0.942   2.78
 5.05 PlyA + 138339 138344    6                               1.05

 6.00 Prom + 147360 147399   40                              -1.16
 6.01 Init + 148752 148821   70  2  1   38   83    62 0.559   1.91
 6.02 Term + 152799 152992  194  1  2   13   52   197 0.876   6.18
 6.03 PlyA + 154271 154276    6                               1.05

 7.02 PlyA - 155606 155601    6                               1.05
 7.01 Sngl - 156267 156163  105  0  0   56   48   243 0.373   8.29
 7.00 Prom - 157599 157560   40                              -3.36

 8.00 Prom + 158503 158542   40                              -3.36
 8.01 Sngl + 168855 169202  348  2  0   92   37   132 0.436   4.55
 8.02 PlyA + 169647 169652    6                               1.05

 9.00 Prom + 173967 174006   40                               0.24
 9.01 Init + 174789 174932  144  2  0   95   72    57 0.704   4.92
 9.02 Intr + 177702 177824  123  2  0  100   69    56 0.662   5.68
 9.03 Term + 188162 188281  120  1  0   90   42    56 0.103  -0.33
 9.04 PlyA + 190378 190383    6                               1.05

10.03 PlyA - 191899 191894    6                               1.05
10.02 Term - 196337 196245   93  2  0  100   50    63 0.570   1.53
10.01 Intr - 198889 198726  164  2  2   42   46    93 0.185   0.19

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  44361  44261  101  1  2   87   49   109 0.828   5.19
S.002 Init +  96894  96901    8  2  2   99   97     2 0.831   2.56
S.003 Intr - 144571 144391  181  1  1   89   95   149 0.869  15.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_1|249_aa
MALLLGLPQTLRRLEGKQTSSYSVCPQHEAVHTEPLDELYKVLAETLMAKGSTQGHWSYL
LPSGGSVTLSESTAIISHGTTGLVTWDTALYLAEWAENPAAFTHRTVLELGSGASLTGLA
ICKMCRPRAYIFSDCHSRVLEQLRGNVLNGLSLEADITSNLDSPRVTLAQLDWDVATVHQ
LSAFQPDVVIAADVLYCPEAIVSLVRVLWRLAACREHQRAPEVYVAFTVRNPETCQLFTT
ELEQYEEFV

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_1|750_bp
atggccttgctcctgggcctgcctcaaaccctccgcagattagaaggaaagcaaacaagc
tcttactctgtctgcccccagcacgaggctgtccacacggagcctttggacgagctgtac
aaggtgctggcagagaccctgatggccaaggggtccacccagggccactggagctatttg
ctgccctcgggaggctccgtcacactctccgagagtacggccatcatctcccacggcacc
acaggcctggtcacatgggacactgccctctaccttgcagaatgggccgagaacccagca
gccttcactcacaggactgtcttagagcttggcagtggtgccagcctcacaggcctggcc
atctgcaagatgtgccgcccccgggcatacatcttcagcgactgtcacagccgggtcctc
gagcagctccgagggaatgtcctcaatggcctctcattagaggcagacatcacttccaac
ttagacagccccagggtgacattggcccagctggactgggacgtcgcgacggtccatcag
ctctctgccttccagccagatgttgtcattgcagcagacgtgctgtattgcccagaagcc
attgtgtcgctggtcagggtcctgtggaggctggctgcctgccgggagcaccagcgggct
cctgaggtctatgtggccttcactgtccgcaacccagagacgtgccagctgttcaccacc
gagctagaacagtatgaggagtttgtgtga

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_2|353_aa
MSKNAAILMPEVEEEGQLEQPHGFSNMEAIKNHFESIWNGGWGQKLVWKRWKTVWSMDDN
FEVNKQHPVWTAATLAKDGKNQSAQAVTVYDKPASFFKEAPLDLQHWLFMKLGSTHSLFR
ARLFFCSFISEPEDPATERSAFMEQDAGSRLVTRLHEQPALLVSSTSWTGKRPLREYYSC
LIHQKHFQHIQVCTPWLEAEDYPLLLAWSVDLGVCLHMSSSGLDLPMKVVDMFGCCLPVC
AMNFKCLHELVKHEENGLVLEDSEELAAQLQMLFSNFPDPEGKLNQFRKNLRESQKLRWD
ESWVQTVLPLVMDTELLGQRLKPQGPCCPSRSFFSESQGKSFRVAPPSGQKLI

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_2|1062_bp
atgtccaagaacgcagctatcctgatgccagaagttgaggaagaaggacagttagaacaa
ccccatggtttcagcaacatggaggccatcaagaaccattttgaatccatatggaatggg
gggtggggacagaagcttgtttggaaaaggtggaaaactgtttggtctatggatgacaat
ttcgaggtgaacaaacaacatcctgtttggacagctgctactctggctaaagatggtaaa
aatcagtcagctcaggctgtgaccgtctacgacaaaccggcatctttctttaaagaggca
cctctggacctgcagcactggctcttcatgaagctgggcagcacacactctctgttcagg
gcccggctttttttctgctctttcatctcagaacctgaggatccagccacggagcggtcg
gccttcatggagcaggatgctgggagcaggctggtgacacgtctccatgagcagccagcc
ctgctggtcagcagcacgagctggacaggcaaacggcctctgagggagtattacagctgc
ctcatccaccagaagcatttccagcatatccaggtctgcaccccctggctggaggccgag
gactaccccctgcttctagcatggtcggtggacctgggtgtctgtctgcacatgtcctcc
agtggcctggacctgcccatgaaggtggtggacatgttcgggtgctgtttgcctgtgtgt
gccatgaacttcaagtgtttacatgagctggtgaaacatgaagaaaacggcctggtcctt
gaggactcagaggaactggcagctcagctgcagatgcttttctcaaactttcctgaccct
gagggcaagctaaaccagttccggaagaacctgcgggagtcgcagaagctccgatgggat
gagagctgggtgcagactgtgctccctttggttatggacacagaactcctgggccagagg
ctaaaaccccagggcccctgctgtccttcccgcagcttcttctcggagtctcagggcaaa
tcctttcgagtagcgcctcccagtggccagaagctgatatga

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_3|206_aa
MSSGTWREPINSFWWKLMVPSIFVSASDELKNKTVCEDKELKLHCHESKFLNIYSVTYGR
RTQERDICSSKPERLPPFRQKVSNLYRPTESNGCLYIPPPRTTEDPERQPVLTGLFLSMC
LVTVLGKLLIMLAFSPDSHLHTHMYFFLSNLSLPDISFTSTIVPKMIVDIQSHSRVISYA
GRLTQMSLFAIFGGMEDRNAPECDGL

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_3|621_bp
atgagcagtgggacttggagagagcccatcaattccttctggtggaagctgatggtgcct
tcaatttttgtttctgcttcagatgaattaaaaaacaaaaccgtgtgtgaagacaaggag
ctgaaactgcactgccatgaatccaagttcctcaacatctactctgtgacatatggcagg
aggacccaggaaagggacatctgctcctccaagccagagcggctccccccttttcggcaa
aaggtgtccaatctctacagacccacagaatctaatggatgtctctatattcctcctcct
agaaccacagaggatccagaacggcagccggtcctcactgggctgttcctgtccatgtgc
ctggtcacagtgctggggaagctgctcatcatgttggccttcagccctgactcccacctc
cacacccacatgtacttcttcctctccaacctgtccttgcctgacatcagtttcacctcc
accattgtccccaagatgattgtggacatccagtctcacagcagagtgatctcctatgca
ggccgcctgactcagatgtctctctttgccatttttggaggcatggaagacagaaatgct
cctgagtgtgatggcctatga

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_4|856_aa
MTVRGRDIDFLVNRGAEHSLVTAPVAPLSKKMIDIIGAMGVSAKQAFCLPRTRTVGGHKV
IHQFWYMPDCPLPFMGRDLLSKLRATISLTEHGSLLPKLPRTGVIMTLMVPERRNGDFSE
LSQAKREDQLWLSGGQEYGRKTTLRDWPVKTGAQPVRQKQDPVPREALQGIQVRLKHLRT
FGIIVPCQSAWNTPLLPVPKPRTKDYRPVQDLRLLHQATLTFPPTVPNPSTLLGLLPAED
SWFTCFDLKDAFFPIRLAPERQKLFAFQWEDPESGISETSVLGDWSKPRTFDIKENPDFA
RRNKMSSVRHSRCRCRPARYRLPRTALAVSEHQPLPVPIAETGGAHHGHGARGASGGKRS
PRALRSPAQLMTAPAVQPEMLPPGSNGTAYPGQFALYQQLAQGNAVGGSAGAPPLGPSQV
VTACLLTLLIIWTLLGNVLVCAAIVRSRHLRANMTNVFIVSLAVSDLFVALLVMPWKAVA
EVAGYWPFGAFCDVWVAFDIMCSTASILNLCVISVDRYWAISRPFRYKRKMTQRMALVMV
GLAWTLSILISFIPVQLNWHRDQAASWGGLDLPNNLANWTPWEEDFWEPDVNAENCDSSL
NRTYAISSSLISFYIPVAIMIVTYTRIYRIAQVQIRRISSLERAAEHAQSCRSSAACAPD
TSLRASIKKETKVLKTLSVIMGVFVCCWLPFFILNCMVPFCSGHPEGPPAGFPCVSETTF
DVFVWFGWANSSLNPVIYAFNADFQKVFAQLLGCSHFCSRTPVETVNISNELISYNQDIV
FHKEIAAAYIHMMPNAVTPGNREVDNDEEEGPFDRMFQIYQTSPDGDPVAESVWELDCEG
EISLDKITPFTPNGFH

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_4|2571_bp
atgacagtccggggtagagacattgattttcttgtaaatagaggtgctgaacattcgcta
gtaactgccccggttgcccccttatccaaaaagatgattgacatcatcggagccatgggg
gtttcagcaaagcaagctttctgcttgcctcggactcgtactgtaggaggacataaagtc
attcatcagttttggtacatgcctgactgtcccttgccctttatgggaagggacttgctc
agcaagctgagagccactatctctttgacagagcacggctctttgctgccaaagttaccc
agaacgggagtcattatgacccttatggtccccgagaggaggaatggagacttttctgaa
ctgagccaggccaagagagaagaccagctctggctaagcggtggccaagagtacgggcgg
aagacaaccctccgggattggccagttaagactggggcccagccggttaggcaaaaacag
gacccggtccccagagaagcccttcaaggtatccaggtccgtctcaagcacctaagaact
tttggaattattgttccttgtcagtctgcgtggaacactcccctcctgcctgttcccaag
ccacggaccaaggactaccggccggtacaggatttgcgcttgcttcatcaagctacactg
actttccctccaacagtacctaacccgtccacattgttggggttgctgccagctgaggac
agctggttcacctgctttgacctgaaagatgctttctttcctatcagattagcccccgag
aggcagaagctgtttgcctttcagtgggaagatccggagtcaggcatctctgaaacatca
gttttgggtgattggtctaagccaaggacctttgatatcaaggaaaatcctgattttgcc
cggagaaacaaaatgtccagtgtcagacacagccgctgccgctgccgtccggcgcgctac
agactcccgagaacagccctggctgtcagcgagcaccagccgcttcctgtccccatcgcg
gagactggaggggcgcaccacggccatggagccagaggcgcttcaggaggcaagagaagt
ccccgcgcgctccgcagcccggcgcagctcatgaccgcccctgcagtccagcccgaaatg
ctgccgccaggcagcaacggcaccgcgtacccggggcagttcgctctataccagcagctg
gcgcaggggaacgccgtggggggctcggcgggggcaccgccactggggccctcacaggtg
gtcaccgcctgcctgctgaccctactcatcatctggaccctgctgggcaacgtgctggtg
tgcgcagccatcgtgcggagccgccacctgcgcgccaacatgaccaacgtcttcatcgtg
tctctggccgtgtcagaccttttcgtggcgctgctggtcatgccctggaaggcagtcgcc
gaggtggccggttactggccctttggagcgttctgcgacgtctgggtggccttcgacatc
atgtgctccactgcctccatcctgaacctgtgcgtcatcagcgtggaccgctactgggcc
atctccaggcccttccgctacaagcgcaagatgactcagcgcatggccttggtcatggtc
ggcctggcatggaccttgtccatcctcatctccttcattccggtccagctcaactggcac
agggaccaggcggcctcttggggcgggctggacctgccaaacaacctggccaactggacg
ccctgggaggaggacttttgggagcccgacgtgaatgcagagaactgtgactccagcctg
aatcgaacctacgccatctcttcctcgctcatcagcttctacatccccgttgccatcatg
atcgtgacctacacgcgcatctaccgcatcgcccaggtgcagatccgcaggatttcctcc
ctggagagggccgcagagcacgcgcagagctgccggagcagcgcagcctgcgcgcccgac
accagcctgcgcgcttccatcaagaaggagaccaaggttctcaagaccctgtcggtgatc
atgggggtcttcgtgtgttgctggctgcccttcttcatccttaactgcatggtccctttc
tgcagtggacaccccgaaggccctccggccggcttcccctgcgtcagtgagaccaccttc
gacgtcttcgtctggttcggctgggctaactcctcactcaaccccgtcatctatgccttc
aacgccgactttcagaaggtgtttgcccagctgctggggtgcagccacttctgctcccgc
acgccggtggagacggtgaacatcagcaatgagctcatctcctacaaccaagacatcgtc
ttccacaaggaaatcgcagctgcctacatccacatgatgcccaacgccgttacccccggc
aaccgggaggtggacaacgacgaggaggagggtcctttcgatcgcatgttccagatctat
cagacgtccccagatggtgaccctgttgctgagtctgtctgggagctggactgcgagggg
gagatttctttagacaaaataacacctttcaccccgaatggattccattaa

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_5|155_aa
MPRGHFHTLCPQKTSGGTKEQHEQRAMVMGIDWVLATCKCSVLSTLETLTHLLSQQIQVV
GPLCPYEDIGFTQSSTLMTQTQDPYFNHISQAPFALDGCWVVDDPSHAERVSFARLSSPS
DTLYGANHYVLLFLPGSVKQELLPFLLTPPPSKED

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_5|468_bp
atgcccagagggcattttcacactctctgtccacaaaagacctcagggggaaccaaagag
cagcatgagcagagggccatggtcatgggcattgactgggtgcttgctacatgcaaatgc
tctgtgttaagcaccttggaaacactaactcatttactgtcccaacaaatccaggttgta
ggacctttgtgtccttatgaggacattgggtttacccagtcatccacgttaatgacccaa
actcaagatccttactttaatcacatcagccaagccccatttgccctagatggatgctgg
gtcgtggatgaccctagccatgctgagcgggtgtcctttgcaagactttcatctccatct
gacacgctgtatggggccaaccattatgtcctcttatttcttcctggatctgttaaacag
gaacttctgccctttttactcactcctcccccaagcaaggaggactaa

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_6|87_aa
MAQATLMLTTANAANRIPEPECGVLQNQREPHGQKTPCQSYLNEWEEEPNSKVGEPVDGA
CNDEGSRPLRLLEELTSQDERDATCSV

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_6|264_bp
atggcccaagcaacactgatgctgaccacagcaaatgctgccaacaggatcccagagcca
gagtgtggagtgctgcagaatcaaagggaaccccatgggcaaaagactccttgtcagtca
tacctgaatgaatgggaagaggagcccaacagcaaagttggagagccagttgacggtgcc
tgcaatgatgaaggcagccggccgctgagattgctggaagaactcaccagtcaagatgaa
cgggatgccacctgcagtgtgtga

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_7|34_aa
MPATVTIIIFTSSYRSTIVIIITIIIFFITITSC

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_7|105_bp
atgcctgccacagttaccatcatcatcttcaccagcagctacagaagcaccatcgtcatc
atcattaccatcatcatcttcttcatcaccatcacttcttgctaa

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_8|115_aa
MNAQMDTGNPAPASAPPPLVQGLAQVLATPPPPVSHPCCAAAIHHWCSYMQEHHHPTPAG
APPQAMHVHPTALLQLLAHLSEHGSHCRSALAGTPIEVLWSLGWEHLGPFSVAGS

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_8|348_bp
atgaatgcacaaatggacactggcaaccctgcccctgccagtgccccacccccactggtg
caagggctagcacaggtgctggcaaccccacccccaccagtgtcccacccctgctgtgct
gctgccattcatcactggtgcagctatatgcaggaacaccaccacccaactcctgctggt
gccccaccccaggcaatgcacgtgcaccccactgcactgttgcagctgctggcacacttg
agcgagcatggatcccactgccgaagtgctttggctggcacacccatcgaagtgttgtgg
tcattgggctgggaacacctcggcccattcagcgtagcaggttcctaa

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_9|128_aa
MDGAGGHYPKSTNIETENQIPHVLNYKWELNIEHTWTQGNNDTVAYLRVSSSNLHSLQLL
LLSHILMLISKPLLEVRERLLSLQNRQPQNCGRTHCCHLWNFVTAATGNGYSPTEDCVLT
ISAAARNN

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_9|387_bp
atggatggagctggaggccattatcctaagtcaactaatatagaaacagaaaaccaaata
ccacatgttctcaattataagtgggagctaaacattgagcacacatggacacaagggaac
aatgacactgtggcctacttgagggtgtcttcctccaacttgcacagcctgcagctccta
ttgctgtcacatatattaatgctgatatcaaagcccctgctggaagtcagggagcgcctg
ctctctttgcagaaccggcagccccagaactgtgggagaacacattgctgtcatttgtgg
aactttgtcacagcagccacaggaaatggatacagcccaacagaggactgtgttctcacc
atctcagcagctgcaaggaataattaa

>gi568815594f:9682030_9883460|GENSCAN_predicted_peptide_10|85_aa
XQTCSEKKLEAETPARGLEQPAQGSYLGQCHPCKGVGIATMISAGHEGKKAVCFMRLEDG
AEGSNPPSMASAALKPSNDPPESPH

>gi568815594f:9682030_9883460|GENSCAN_predicted_CDS_10|258_bp
nggcagacctgcagtgagaagaaactggaggcagagacaccagccaggggcctggagcag
ccagcccagggcagttatctgggacagtgccacccctgcaaaggtgtgggcattgccact
atgataagtgcaggtcatgagggcaagaaagctgtatgtttcatgaggctggaagatgga
gctgaaggttccaaccctccaagcatggccagcgctgccttgaaaccatctaatgaccca
cctgagtcaccacattag