Result of FASTA (ccds) for pF1KB6944
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6944, 231 aa
  1>>>pF1KB6944 231 - 231 aa - 231 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2918+/-0.000674; mu= 13.8376+/- 0.041
 mean_var=57.8120+/-11.335, 0's: 0 Z-trim(109.2): 14  B-trim: 0 in 0/52
 Lambda= 0.168681
 statistics sampled from 10733 (10740) to 10733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.33), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS12602.1 PAFAH1B3 gene_id:5050|Hs108|chr19      ( 231) 1601 397.4 4.2e-111
CCDS8380.1 PAFAH1B2 gene_id:5049|Hs108|chr11       ( 229) 1040 260.8 5.2e-70
CCDS53714.1 PAFAH1B2 gene_id:5049|Hs108|chr11      ( 202)  722 183.4 9.1e-47
CCDS53715.1 PAFAH1B2 gene_id:5049|Hs108|chr11      ( 155)  714 181.5 2.8e-46
CCDS53713.1 PAFAH1B2 gene_id:5049|Hs108|chr11      ( 132)  693 176.3 8.3e-45


>>CCDS12602.1 PAFAH1B3 gene_id:5050|Hs108|chr19           (231 aa)
 initn: 1601 init1: 1601 opt: 1601  Z-score: 2108.2  bits: 397.4 E(32554): 4.2e-111
Smith-Waterman score: 1601; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KB6 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH
              130       140       150       160       170       180

              190       200       210       220       230 
pF1KB6 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
              190       200       210       220       230 

>>CCDS8380.1 PAFAH1B2 gene_id:5049|Hs108|chr11            (229 aa)
 initn: 1047 init1: 1031 opt: 1040  Z-score: 1370.4  bits: 260.8 E(32554): 5.2e-70
Smith-Waterman score: 1040; 65.3% identity (88.0% similar) in 216 aa overlap (3-218:4-219)

                10        20        30        40        50         
pF1KB6  MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
          :. :::. :  ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS83 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
       :::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS83 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
       ::::.: :::::...::::::::..:::::.:: .::.:....:     ...::.: :::
CCDS83 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
              130       140       150       160       170       180

     180       190       200       210       220       230 
pF1KB6 HSDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
       ::::.:: :::.:.:::.  ::. .:. :: :...:: .             
CCDS83 HSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQTTIA   
              190       200       210       220            

>>CCDS53714.1 PAFAH1B2 gene_id:5049|Hs108|chr11           (202 aa)
 initn: 722 init1: 722 opt: 722  Z-score: 953.1  bits: 183.4 E(32554): 9.1e-47
Smith-Waterman score: 722; 72.6% identity (91.1% similar) in 135 aa overlap (3-137:4-138)

                10        20        30        40        50         
pF1KB6  MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
          :. :::. :  ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
       :::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
       ::::.: :::::...:::                                          
CCDS53 IVQLINTRQPQAKIIVLGKAAASKYSISEIVRLEQGSVNWSIGTYPDDTPATTRPAILQL
              130       140       150       160       170       180

>>CCDS53715.1 PAFAH1B2 gene_id:5049|Hs108|chr11           (155 aa)
 initn: 714 init1: 714 opt: 714  Z-score: 944.4  bits: 181.5 E(32554): 2.8e-46
Smith-Waterman score: 714; 72.4% identity (91.0% similar) in 134 aa overlap (3-136:4-137)

                10        20        30        40        50         
pF1KB6  MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
          :. :::. :  ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
       :::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
       ::::.: :::::...::                                           
CCDS53 IVQLINTRQPQAKIIVLIIYWQDEQDYHERKVQMD                         
              130       140       150                              

>>CCDS53713.1 PAFAH1B2 gene_id:5049|Hs108|chr11           (132 aa)
 initn: 693 init1: 693 opt: 693  Z-score: 917.9  bits: 176.3 E(32554): 8.3e-45
Smith-Waterman score: 693; 73.6% identity (90.7% similar) in 129 aa overlap (3-131:4-132)

                10        20        30        40        50         
pF1KB6  MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
          :. :::. :  ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
       :::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
       ::::.: :::::                                                
CCDS53 IVQLINTRQPQA                                                
              130                                                  




231 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:33:42 2016 done: Fri Nov  4 11:33:43 2016
 Total Scan time:  2.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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