Result of FASTA (omim) for pF1KB6860
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6860, 187 aa
  1>>>pF1KB6860 187 - 187 aa - 187 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6149+/-0.000313; mu= 17.3812+/- 0.019
 mean_var=65.9608+/-13.508, 0's: 0 Z-trim(117.7): 38  B-trim: 682 in 1/52
 Lambda= 0.157918
 statistics sampled from 29807 (29850) to 29807 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.35), width:  16
 Scan time:  6.010

The best scores are:                                      opt bits E(85289)
NP_005000 (OMIM: 601818) nucleoside diphosphate ki ( 187) 1278 299.1 2.6e-81
NP_001273364 (OMIM: 601818) nucleoside diphosphate ( 173) 1010 238.1   6e-63
NP_001273365 (OMIM: 601818) nucleoside diphosphate ( 117)  786 186.9   1e-47
NP_001273367 (OMIM: 601818) nucleoside diphosphate ( 117)  786 186.9   1e-47
NP_001273369 (OMIM: 601818) nucleoside diphosphate ( 117)  786 186.9   1e-47
NP_001273368 (OMIM: 601818) nucleoside diphosphate ( 117)  786 186.9   1e-47
NP_002504 (OMIM: 601817) nucleoside diphosphate ki ( 169)  652 156.5 2.1e-38
NP_000260 (OMIM: 156490,256700) nucleoside diphosp ( 152)  621 149.4 2.6e-36
NP_937818 (OMIM: 156490,256700) nucleoside diphosp ( 177)  621 149.4 2.9e-36
NP_001018147 (OMIM: 156491) nucleoside diphosphate ( 152)  609 146.6 1.7e-35
NP_001018148 (OMIM: 156491) nucleoside diphosphate ( 152)  609 146.6 1.7e-35
NP_001018149 (OMIM: 156491) nucleoside diphosphate ( 152)  609 146.6 1.7e-35
NP_002503 (OMIM: 156491) nucleoside diphosphate ki ( 152)  609 146.6 1.7e-35
NP_001273362 (OMIM: 601818) nucleoside diphosphate ( 153)  535 129.8 2.1e-30
XP_005255389 (OMIM: 601817) PREDICTED: nucleoside  ( 165)  499 121.6 6.4e-28
NP_001185611 (OMIM: 156491) nucleoside diphosphate (  82)  328 82.4 2.1e-16
XP_011520805 (OMIM: 601817) PREDICTED: nucleoside  ( 170)  308 78.1 8.3e-15
NP_932076 (OMIM: 613465) nucleoside diphosphate ki ( 340)  250 65.2 1.3e-10
XP_016856588 (OMIM: 613465) PREDICTED: nucleoside  ( 367)  250 65.2 1.4e-10
NP_037462 (OMIM: 613465) nucleoside diphosphate ki ( 376)  250 65.2 1.4e-10
XP_005272156 (OMIM: 603575) PREDICTED: nucleoside  ( 148)  232 60.7 1.2e-09
NP_001295356 (OMIM: 608294) nucleoside diphosphate ( 186)  231 60.6 1.7e-09
NP_001295357 (OMIM: 608294) nucleoside diphosphate ( 186)  231 60.6 1.7e-09
XP_016861003 (OMIM: 608294) PREDICTED: nucleoside  ( 186)  231 60.6 1.7e-09
NP_001295355 (OMIM: 608294) nucleoside diphosphate ( 186)  231 60.6 1.7e-09
XP_016861002 (OMIM: 608294) PREDICTED: nucleoside  ( 190)  231 60.6 1.7e-09
NP_005784 (OMIM: 608294) nucleoside diphosphate ki ( 194)  231 60.6 1.7e-09
XP_006714779 (OMIM: 603575) PREDICTED: nucleoside  ( 149)  229 60.1   2e-09
NP_003542 (OMIM: 603575) nucleoside diphosphate ki ( 212)  229 60.2 2.5e-09
XP_016865434 (OMIM: 603575) PREDICTED: nucleoside  ( 278)  229 60.3 3.1e-09
XP_011520806 (OMIM: 601817) PREDICTED: nucleoside  ( 136)  193 51.8 5.4e-07
NP_057700 (OMIM: 607421,610852) thioredoxin domain ( 588)  194 52.6 1.3e-06
NP_001295363 (OMIM: 608294) nucleoside diphosphate ( 141)  186 50.2 1.7e-06
XP_005245163 (OMIM: 613465) PREDICTED: nucleoside  ( 252)  169 46.6 3.8e-05
XP_016856589 (OMIM: 613465) PREDICTED: nucleoside  ( 252)  169 46.6 3.8e-05
XP_016861007 (OMIM: 608294) PREDICTED: nucleoside  ( 111)  156 43.3 0.00016
XP_016861001 (OMIM: 608294) PREDICTED: nucleoside  ( 264)  153 43.0 0.00049
XP_016861006 (OMIM: 608294) PREDICTED: nucleoside  ( 114)  143 40.4  0.0013


>>NP_005000 (OMIM: 601818) nucleoside diphosphate kinase  (187 aa)
 initn: 1278 init1: 1278 opt: 1278  Z-score: 1580.6  bits: 299.1 E(85289): 2.6e-81
Smith-Waterman score: 1278; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KB6 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
              130       140       150       160       170       180

              
pF1KB6 HSSIHPA
       :::::::
NP_005 HSSIHPA
              

>>NP_001273364 (OMIM: 601818) nucleoside diphosphate kin  (173 aa)
 initn: 998 init1: 998 opt: 1010  Z-score: 1251.1  bits: 238.1 E(85289): 6e-63
Smith-Waterman score: 1010; 91.5% identity (93.9% similar) in 165 aa overlap (1-165:1-162)

               10        20        30        40        50        60
pF1KB6 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
       ::::::::::::::::::::::::::    :    .. .::: :.               
NP_001 RAMIGHTDSAEAAPGTIRGDFSVHISS---HRLAPLDRGQREQQMVPGIPQGAHEA    
              130       140          150       160       170       

              
pF1KB6 HSSIHPA

>>NP_001273365 (OMIM: 601818) nucleoside diphosphate kin  (117 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 977.5  bits: 186.9 E(85289): 1e-47
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 117 aa overlap (71-187:1-117)

               50        60        70        80        90       100
pF1KB6 LVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                     ::::::::::::::::::::::::::::::
NP_001                               MKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                             10        20        30

              110       120       130       140       150       160
pF1KB6 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
               40        50        60        70        80        90

              170       180       
pF1KB6 REIQLWFQSSELVSWADGGQHSSIHPA
       :::::::::::::::::::::::::::
NP_001 REIQLWFQSSELVSWADGGQHSSIHPA
              100       110       

>>NP_001273367 (OMIM: 601818) nucleoside diphosphate kin  (117 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 977.5  bits: 186.9 E(85289): 1e-47
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 117 aa overlap (71-187:1-117)

               50        60        70        80        90       100
pF1KB6 LVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                     ::::::::::::::::::::::::::::::
NP_001                               MKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                             10        20        30

              110       120       130       140       150       160
pF1KB6 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
               40        50        60        70        80        90

              170       180       
pF1KB6 REIQLWFQSSELVSWADGGQHSSIHPA
       :::::::::::::::::::::::::::
NP_001 REIQLWFQSSELVSWADGGQHSSIHPA
              100       110       

>>NP_001273369 (OMIM: 601818) nucleoside diphosphate kin  (117 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 977.5  bits: 186.9 E(85289): 1e-47
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 117 aa overlap (71-187:1-117)

               50        60        70        80        90       100
pF1KB6 LVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                     ::::::::::::::::::::::::::::::
NP_001                               MKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                             10        20        30

              110       120       130       140       150       160
pF1KB6 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
               40        50        60        70        80        90

              170       180       
pF1KB6 REIQLWFQSSELVSWADGGQHSSIHPA
       :::::::::::::::::::::::::::
NP_001 REIQLWFQSSELVSWADGGQHSSIHPA
              100       110       

>>NP_001273368 (OMIM: 601818) nucleoside diphosphate kin  (117 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 977.5  bits: 186.9 E(85289): 1e-47
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 117 aa overlap (71-187:1-117)

               50        60        70        80        90       100
pF1KB6 LVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                     ::::::::::::::::::::::::::::::
NP_001                               MKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                             10        20        30

              110       120       130       140       150       160
pF1KB6 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
               40        50        60        70        80        90

              170       180       
pF1KB6 REIQLWFQSSELVSWADGGQHSSIHPA
       :::::::::::::::::::::::::::
NP_001 REIQLWFQSSELVSWADGGQHSSIHPA
              100       110       

>>NP_002504 (OMIM: 601817) nucleoside diphosphate kinase  (169 aa)
 initn: 683 init1: 652 opt: 652  Z-score: 810.4  bits: 156.5 E(85289): 2.1e-38
Smith-Waterman score: 652; 61.8% identity (88.9% similar) in 144 aa overlap (38-181:22-165)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:::::::::::::....::::.:: 
NP_002          MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
                        10        20        30        40        50 

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       ::..:..:: : .: ::: .::..:::  :..::.:::::::::.: .:::.:::.:: :
NP_002 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
              60        70        80        90       100       110 

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :      
NP_002 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE  
             120       130       140       150       160           

>>NP_000260 (OMIM: 156490,256700) nucleoside diphosphate  (152 aa)
 initn: 649 init1: 621 opt: 621  Z-score: 772.9  bits: 149.4 E(85289): 2.6e-36
Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (38-181:5-148)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
NP_000                           MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                                         10        20        30    

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       :::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
NP_000 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
           40        50        60        70        80        90    

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....::.::.:::::.:..:: :::.  :::.... .:.      
NP_000 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE  
          100       110       120       130       140       150    

>>NP_937818 (OMIM: 156490,256700) nucleoside diphosphate  (177 aa)
 initn: 636 init1: 621 opt: 621  Z-score: 772.0  bits: 149.4 E(85289): 2.9e-36
Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (38-181:30-173)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
NP_937  MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                10        20        30        40        50         

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       :::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
NP_937 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
      60        70        80        90       100       110         

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....::.::.:::::.:..:: :::.  :::.... .:.      
NP_937 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE  
     120       130       140       150       160       170         

>>NP_001018147 (OMIM: 156491) nucleoside diphosphate kin  (152 aa)
 initn: 639 init1: 609 opt: 609  Z-score: 758.1  bits: 146.6 E(85289): 1.7e-35
Smith-Waterman score: 609; 59.4% identity (89.9% similar) in 138 aa overlap (38-175:5-142)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
NP_001                           MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                                         10        20        30    

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       ::.::.:.: :  : .:: ::. .::.:.:..::.::::::::::: :::...:.:.:.:
NP_001 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
           40        50        60        70        80        90    

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....::.::.::::..:..::.:::.  :::..            
NP_001 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE  
          100       110       120       130       140       150    




187 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:10:23 2016 done: Fri Nov  4 14:10:24 2016
 Total Scan time:  6.010 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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