Result of FASTA (ccds) for pF1KB6860
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6860, 187 aa
  1>>>pF1KB6860 187 - 187 aa - 187 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6466+/-0.000658; mu= 17.1868+/- 0.040
 mean_var=66.5215+/-13.543, 0's: 0 Z-trim(111.1): 18  B-trim: 0 in 0/49
 Lambda= 0.157251
 statistics sampled from 12105 (12123) to 12105 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.372), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS10408.1 NME4 gene_id:4833|Hs108|chr16          ( 187) 1278 297.9 2.4e-81
CCDS66886.1 NME4 gene_id:4833|Hs108|chr16          ( 117)  786 186.1 6.9e-48
CCDS10443.1 NME3 gene_id:4832|Hs108|chr16          ( 169)  652 155.8 1.3e-38
CCDS11579.1 NME1 gene_id:4830|Hs108|chr17          ( 152)  621 148.7 1.6e-36
CCDS11578.1 NME1 gene_id:4830|Hs108|chr17          ( 177)  621 148.8 1.7e-36
CCDS11580.1 NME2 gene_id:4831|Hs108|chr17          ( 152)  609 146.0   1e-35
CCDS32682.1 NME2 gene_id:654364|Hs108|chr17        ( 267)  609 146.2 1.5e-35
CCDS73797.1 NME4 gene_id:4833|Hs108|chr16          ( 153)  535 129.2 1.2e-30
CCDS74107.1 NME2 gene_id:4831|Hs108|chr17          (  82)  328 82.0   1e-16
CCDS44274.1 NME7 gene_id:29922|Hs108|chr1          ( 340)  250 64.9 6.1e-11
CCDS1277.1 NME7 gene_id:29922|Hs108|chr1           ( 376)  250 64.9 6.5e-11


>>CCDS10408.1 NME4 gene_id:4833|Hs108|chr16               (187 aa)
 initn: 1278 init1: 1278 opt: 1278  Z-score: 1573.8  bits: 297.9 E(32554): 2.4e-81
Smith-Waterman score: 1278; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KB6 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
              130       140       150       160       170       180

              
pF1KB6 HSSIHPA
       :::::::
CCDS10 HSSIHPA
              

>>CCDS66886.1 NME4 gene_id:4833|Hs108|chr16               (117 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 973.2  bits: 186.1 E(32554): 6.9e-48
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 117 aa overlap (71-187:1-117)

               50        60        70        80        90       100
pF1KB6 LVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                     ::::::::::::::::::::::::::::::
CCDS66                               MKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                             10        20        30

              110       120       130       140       150       160
pF1KB6 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
               40        50        60        70        80        90

              170       180       
pF1KB6 REIQLWFQSSELVSWADGGQHSSIHPA
       :::::::::::::::::::::::::::
CCDS66 REIQLWFQSSELVSWADGGQHSSIHPA
              100       110       

>>CCDS10443.1 NME3 gene_id:4832|Hs108|chr16               (169 aa)
 initn: 683 init1: 652 opt: 652  Z-score: 806.8  bits: 155.8 E(32554): 1.3e-38
Smith-Waterman score: 652; 61.8% identity (88.9% similar) in 144 aa overlap (38-181:22-165)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:::::::::::::....::::.:: 
CCDS10          MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
                        10        20        30        40        50 

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       ::..:..:: : .: ::: .::..:::  :..::.:::::::::.: .:::.:::.:: :
CCDS10 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
              60        70        80        90       100       110 

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :      
CCDS10 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE  
             120       130       140       150       160           

>>CCDS11579.1 NME1 gene_id:4830|Hs108|chr17               (152 aa)
 initn: 649 init1: 621 opt: 621  Z-score: 769.4  bits: 148.7 E(32554): 1.6e-36
Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (38-181:5-148)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
CCDS11                           MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                                         10        20        30    

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       :::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
CCDS11 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
           40        50        60        70        80        90    

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....::.::.:::::.:..:: :::.  :::.... .:.      
CCDS11 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE  
          100       110       120       130       140       150    

>>CCDS11578.1 NME1 gene_id:4830|Hs108|chr17               (177 aa)
 initn: 636 init1: 621 opt: 621  Z-score: 768.5  bits: 148.8 E(32554): 1.7e-36
Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (38-181:30-173)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
CCDS11  MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                10        20        30        40        50         

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       :::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
CCDS11 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
      60        70        80        90       100       110         

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....::.::.:::::.:..:: :::.  :::.... .:.      
CCDS11 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE  
     120       130       140       150       160       170         

>>CCDS11580.1 NME2 gene_id:4831|Hs108|chr17               (152 aa)
 initn: 639 init1: 609 opt: 609  Z-score: 754.7  bits: 146.0 E(32554): 1e-35
Smith-Waterman score: 609; 59.4% identity (89.9% similar) in 138 aa overlap (38-175:5-142)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
CCDS11                           MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                                         10        20        30    

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       ::.::.:.: :  : .:: ::. .::.:.:..::.::::::::::: :::...:.:.:.:
CCDS11 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
           40        50        60        70        80        90    

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....::.::.::::..:..::.:::.  :::..            
CCDS11 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE  
          100       110       120       130       140       150    

>>CCDS32682.1 NME2 gene_id:654364|Hs108|chr17             (267 aa)
 initn: 1093 init1: 609 opt: 609  Z-score: 751.5  bits: 146.2 E(32554): 1.5e-35
Smith-Waterman score: 609; 59.4% identity (89.9% similar) in 138 aa overlap (38-175:120-257)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
CCDS32 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
      90       100       110       120       130       140         

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       ::.::.:.: :  : .:: ::. .::.:.:..::.::::::::::: :::...:.:.:.:
CCDS32 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
     150       160       170       180       190       200         

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....::.::.::::..:..::.:::.  :::..            
CCDS32 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE  
     210       220       230       240       250       260         

>--
 initn: 519 init1: 498 opt: 498  Z-score: 615.4  bits: 121.1 E(32554): 5.9e-28
Smith-Waterman score: 498; 58.9% identity (89.3% similar) in 112 aa overlap (38-149:5-116)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
CCDS32                           MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                                         10        20        30    

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       :::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
CCDS32 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
           40        50        60        70        80        90    

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       . :.. :::::::: ....:..                                      
CCDS32 NPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMK
          100       110       120       130       140       150    

>>CCDS73797.1 NME4 gene_id:4833|Hs108|chr16               (153 aa)
 initn: 526 init1: 526 opt: 535  Z-score: 663.9  bits: 129.2 E(32554): 1.2e-30
Smith-Waterman score: 972; 81.8% identity (81.8% similar) in 187 aa overlap (1-187:1-153)

               10        20        30        40        50        60
pF1KB6 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
       :::::::::::::::                                  :::::::::::
CCDS73 FERRGFTLVGMKMLQ----------------------------------VWEGYNVVRAS
               70                                          80      

              130       140       150       160       170       180
pF1KB6 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
         90       100       110       120       130       140      

              
pF1KB6 HSSIHPA
       :::::::
CCDS73 HSSIHPA
        150   

>>CCDS74107.1 NME2 gene_id:4831|Hs108|chr17               (82 aa)
 initn: 328 init1: 328 opt: 328  Z-score: 413.7  bits: 82.0 E(32554): 1e-16
Smith-Waterman score: 328; 62.5% identity (88.9% similar) in 72 aa overlap (38-109:5-76)

        10        20        30        40        50        60       
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
                                     :::..:.::::::: :::..:.:::..:: 
CCDS74                           MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
                                         10        20        30    

        70        80        90       100       110       120       
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
       ::.::.:.: :  : .:: ::. .::.:.:..::.:::::::                  
CCDS74 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMEHHSWQ            
           40        50        60        70        80              

       130       140       150       160       170       180       
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA

>>CCDS44274.1 NME7 gene_id:29922|Hs108|chr1               (340 aa)
 initn: 249 init1: 134 opt: 250  Z-score: 309.9  bits: 64.9 E(32554): 6.1e-11
Smith-Waterman score: 250; 29.9% identity (68.6% similar) in 137 aa overlap (37-170:55-189)

         10        20        30        40        50        60      
pF1KB6 RSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGF
                                     .:.::. .:::....  .:..:. ... ::
CCDS44 FIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISK--AGEIIEIINKAGF
           30        40        50        60          70        80  

         70        80        90       100       110       120      
pF1KB6 TLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGH
       :.. .::..  ..   . . : . .::.  ::.....::..::     ...   . ..: 
CCDS44 TITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGP
             90       100       110       120       130       140  

        130          140       150       160       170       180   
pF1KB6 TDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSS
       ..:. :   :  .::. :..   ::. :. ::  .: ::..:.: ::             
CCDS44 ANSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTN
            150       160       170       180       190       200  

                                                                   
pF1KB6 IHPA                                                        
                                                                   
CCDS44 CTCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDM
            210       220       230       240       250       260  




187 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:10:22 2016 done: Fri Nov  4 14:10:23 2016
 Total Scan time:  1.650 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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