Result of FASTA (ccds) for pF1KB6840
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6840, 191 aa
  1>>>pF1KB6840 191 - 191 aa - 191 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0551+/-0.000827; mu= 13.9730+/- 0.049
 mean_var=58.8586+/-11.904, 0's: 0 Z-trim(106.2): 32  B-trim: 165 in 1/48
 Lambda= 0.167174
 statistics sampled from 8845 (8857) to 8845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.272), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS4373.1 KCNMB1 gene_id:3779|Hs108|chr5          ( 191) 1272 314.9 1.9e-86
CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3         ( 235)  534 136.9 8.8e-33
CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3        ( 257)  235 64.8 4.9e-11
CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3        ( 275)  235 64.9 5.1e-11
CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3         ( 277)  235 64.9 5.2e-11
CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3         ( 279)  235 64.9 5.2e-11


>>CCDS4373.1 KCNMB1 gene_id:3779|Hs108|chr5               (191 aa)
 initn: 1272 init1: 1272 opt: 1272  Z-score: 1665.3  bits: 314.9 E(32554): 1.9e-86
Smith-Waterman score: 1272; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KB6 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLIETNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLIETNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RDQEELKGKKVPQYPCLWVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RDQEELKGKKVPQYPCLWVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EKVRAKFQEQQVFYCFSAPRGNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKVRAKFQEQQVFYCFSAPRGNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKS
              130       140       150       160       170       180

              190 
pF1KB6 NQYLSILAAQK
       :::::::::::
CCDS43 NQYLSILAAQK
              190 

>>CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3              (235 aa)
 initn: 532 init1: 339 opt: 534  Z-score: 702.0  bits: 136.9 E(32554): 8.8e-33
Smith-Waterman score: 534; 43.5% identity (73.1% similar) in 193 aa overlap (3-187:34-226)

                                           10        20        30  
pF1KB6                             MVKKLVMAQKRGETRALCLGVTMVVCAVITYY
                                     .: : : : :: ::. ::..:.::... :.
CCDS32 WTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYF
            10        20        30        40        50        60   

             40        50        60              70          80    
pF1KB6 ILVTTVLPLYQKSVWTQESKCHLIETNIRDQEELK---GK---KVPQYPCL--WVNVSAA
       .:  :.:  :..::::.::.: :....: .  . .   :    :. :::::  .::....
CCDS32 LLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSS
            70        80        90       100       110       120   

           90       100       110       120       130       140    
pF1KB6 GRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQVFYCFSAPRGNET
       :.  .:::::.:   ::.:::::    :.. . . :. :  .:.. : : :.: :.::. 
CCDS32 GEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEGNQK
           130       140       150       160       170       180   

          150       160       170       180       190      
pF1KB6 SVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK     
       ::.. .::. ..:. :::::: ...::. :.:::: .::::.:         
CCDS32 SVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
           190       200       210       220       230     

>>CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3             (257 aa)
 initn: 324 init1: 153 opt: 235  Z-score: 311.7  bits: 64.8 E(32554): 4.9e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:32-218)

                                  10        20        30        40 
pF1KB6                    MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
                                     :: ::. :: .:.  .:. ...: ::.:  
CCDS43 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
              10        20        30        40        50        60 

              50        60               70          80        90  
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
       .. :.  .:: :  :.:.: :.         .. .   .::::  .::.:  :. :.:..
CCDS43 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
              70        80        90       100       110       120 

            100       110       120       130         140       150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
       .:.. . : .: : :   .. .    ..  ..  :....   : :: .: ..  .:.. .
CCDS43 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
             130       140       150       160       170       180 

              160       170       180       190                    
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK                   
        :  .:..  ::::.. : :: ::..::. .:.::.:                       
CCDS43 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
             190       200       210       220       230       240 

CCDS43 FKLCIMRRSKGRAEKS
             250       

>>CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3             (275 aa)
 initn: 324 init1: 153 opt: 235  Z-score: 311.2  bits: 64.9 E(32554): 5.1e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:50-236)

                                  10        20        30        40 
pF1KB6                    MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
                                     :: ::. :: .:.  .:. ...: ::.:  
CCDS43 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
      20        30        40        50        60        70         

              50        60               70          80        90  
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
       .. :.  .:: :  :.:.: :.         .. .   .::::  .::.:  :. :.:..
CCDS43 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
      80        90       100       110       120       130         

            100       110       120       130         140       150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
       .:.. . : .: : :   .. .    ..  ..  :....   : :: .: ..  .:.. .
CCDS43 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
     140       150       160       170       180       190         

              160       170       180       190                    
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK                   
        :  .:..  ::::.. : :: ::..::. .:.::.:                       
CCDS43 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
     200       210       220       230       240       250         

CCDS43 FKLCIMRRSKGRAEKS
     260       270     

>>CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3              (277 aa)
 initn: 324 init1: 153 opt: 235  Z-score: 311.2  bits: 64.9 E(32554): 5.2e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:52-238)

                                  10        20        30        40 
pF1KB6                    MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
                                     :: ::. :: .:.  .:. ...: ::.:  
CCDS32 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
              30        40        50        60        70        80 

              50        60               70          80        90  
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
       .. :.  .:: :  :.:.: :.         .. .   .::::  .::.:  :. :.:..
CCDS32 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
              90       100       110       120       130       140 

            100       110       120       130         140       150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
       .:.. . : .: : :   .. .    ..  ..  :....   : :: .: ..  .:.. .
CCDS32 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
             150       160       170       180       190       200 

              160       170       180       190                    
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK                   
        :  .:..  ::::.. : :: ::..::. .:.::.:                       
CCDS32 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
             210       220       230       240       250       260 

CCDS32 FKLCIMRRSKGRAEKS
             270       

>>CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3              (279 aa)
 initn: 324 init1: 153 opt: 235  Z-score: 311.1  bits: 64.9 E(32554): 5.2e-11
Smith-Waterman score: 318; 31.0% identity (63.1% similar) in 187 aa overlap (12-187:54-240)

                                  10        20        30        40 
pF1KB6                    MVKKLVMAQKRGETRALCLGVTMVVCAVITYYILVTTVLPL
                                     :: ::. :: .:.  .:. ...: ::.:  
CCDS32 TAFPASGKKRETDYSDGDPLDVHKRLPSSAGEDRAVMLGFAMMGFSVLMFFLLGTTILKP
            30        40        50        60        70        80   

              50        60               70          80        90  
pF1KB6 YQKSVWTQESKCHLIETNIRDQEE-------LKGKKVPQYPCL--WVNVSAAGRWAVLYH
       .. :.  .:: :  :.:.: :.         .. .   .::::  .::.:  :. :.:..
CCDS32 FMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVNLSHPGQKALLHY
            90       100       110       120       130       140   

            100       110       120       130         140       150
pF1KB6 TEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQ--VFYCFSAPRGNETSVLFQR
       .:.. . : .: : :   .. .    ..  ..  :....   : :: .: ..  .:.. .
CCDS32 NEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYSPASQSEDVILIK
           150       160       170       180       190       200   

              160       170       180       190                    
pF1KB6 LYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK                   
        :  .:..  ::::.. : :: ::..::. .:.::.:                       
CCDS32 KYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDEVGGKVPYIEQHQ
           210       220       230       240       250       260   

CCDS32 FKLCIMRRSKGRAEKS
           270         




191 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:56:36 2016 done: Fri Nov  4 14:56:36 2016
 Total Scan time:  1.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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