Result of FASTA (omim) for pF1KB6749
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6749, 103 aa
  1>>>pF1KB6749 103 - 103 aa - 103 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8049+/-0.000325; mu= 12.4107+/- 0.020
 mean_var=60.3848+/-11.932, 0's: 0 Z-trim(115.6): 22  B-trim: 385 in 1/49
 Lambda= 0.165048
 statistics sampled from 26133 (26153) to 26133 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.307), width:  16
 Scan time:  4.280

The best scores are:                                      opt bits E(85289)
NP_003533 (OMIM: 602827) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_068803 (OMIM: 602826) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003529 (OMIM: 602822) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003537 (OMIM: 602831) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003531 (OMIM: 602824) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003535 (OMIM: 602829) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_778224 (OMIM: 615069) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003530 (OMIM: 602823) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003534 (OMIM: 602828) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003536 (OMIM: 602830) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003532 (OMIM: 602825) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003539 (OMIM: 142750) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003486 (OMIM: 602833) histone H4 [Homo sapiens] ( 103)  663 165.5 1.3e-41
NP_003538 (OMIM: 602832) histone H4-like protein t (  98)  489 124.1 3.8e-29


>>NP_003533 (OMIM: 602827) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_068803 (OMIM: 602826) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_068 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_003529 (OMIM: 602822) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_003537 (OMIM: 602831) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_003531 (OMIM: 602824) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_003535 (OMIM: 602829) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_778224 (OMIM: 615069) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_778 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_003530 (OMIM: 602823) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_003534 (OMIM: 602828) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   

>>NP_003536 (OMIM: 602830) histone H4 [Homo sapiens]      (103 aa)
 initn: 663 init1: 663 opt: 663  Z-score: 867.8  bits: 165.5 E(85289): 1.3e-41
Smith-Waterman score: 663; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)

               10        20        30        40        50        60
pF1KB6 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
               10        20        30        40        50        60

               70        80        90       100   
pF1KB6 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
       :::::::::::::::::::::::::::::::::::::::::::
NP_003 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
               70        80        90       100   




103 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:26:58 2016 done: Fri Nov  4 15:26:59 2016
 Total Scan time:  4.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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