Result of FASTA (omim) for pF1KB6740
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6740, 142 aa
  1>>>pF1KB6740 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7822+/-0.000377; mu= 13.1388+/- 0.023
 mean_var=50.8275+/-10.180, 0's: 0 Z-trim(112.1): 17  B-trim: 539 in 1/52
 Lambda= 0.179897
 statistics sampled from 20919 (20932) to 20919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.245), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(85289)
NP_006692 (OMIM: 608572,611595) thioredoxin-like p ( 142)  976 260.9   5e-70
NP_001292486 (OMIM: 608572,611595) thioredoxin-lik ( 134)  905 242.5 1.7e-64
NP_001290400 (OMIM: 608572,611595) thioredoxin-lik ( 103)  614 166.9 7.2e-42
NP_001292492 (OMIM: 608572,611595) thioredoxin-lik (  71)  487 133.9 4.4e-32
NP_001292493 (OMIM: 608572,611595) thioredoxin-lik (  71)  487 133.9 4.4e-32
NP_003320 (OMIM: 187700) thioredoxin isoform 1 [Ho ( 105)  115 37.4  0.0071
NP_006532 (OMIM: 612754) glutaredoxin-3 isoform 1  ( 335)  120 38.9  0.0078
NP_001186797 (OMIM: 612754) glutaredoxin-3 isoform ( 335)  120 38.9  0.0078


>>NP_006692 (OMIM: 608572,611595) thioredoxin-like prote  (142 aa)
 initn: 976 init1: 976 opt: 976  Z-score: 1378.3  bits: 260.9 E(85289): 5e-70
Smith-Waterman score: 976; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB6 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
               70        80        90       100       110       120

              130       140  
pF1KB6 RGARKGRGLVVSPKDYSTKYRY
       ::::::::::::::::::::::
NP_006 RGARKGRGLVVSPKDYSTKYRY
              130       140  

>>NP_001292486 (OMIM: 608572,611595) thioredoxin-like pr  (134 aa)
 initn: 617 init1: 617 opt: 905  Z-score: 1279.1  bits: 242.5 E(85289): 1.7e-64
Smith-Waterman score: 905; 94.4% identity (94.4% similar) in 142 aa overlap (1-142:1-134)

               10        20        30        40        50        60
pF1KB6 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
       ::::::::::::::::::::::::::::::::::::::::::::        ::::::::
NP_001 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEV--------KNFAVIYL
               10        20        30        40                50  

               70        80        90       100       110       120
pF1KB6 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
             60        70        80        90       100       110  

              130       140  
pF1KB6 RGARKGRGLVVSPKDYSTKYRY
       ::::::::::::::::::::::
NP_001 RGARKGRGLVVSPKDYSTKYRY
            120       130    

>>NP_001290400 (OMIM: 608572,611595) thioredoxin-like pr  (103 aa)
 initn: 614 init1: 614 opt: 614  Z-score: 872.7  bits: 166.9 E(85289): 7.2e-42
Smith-Waterman score: 614; 100.0% identity (100.0% similar) in 91 aa overlap (52-142:13-103)

              30        40        50        60        70        80 
pF1KB6 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTV
                                     ::::::::::::::::::::::::::::::
NP_001                   MLLARKQILCVNVKNFAVIYLVDITEVPDFNKMYELYDPCTV
                                 10        20        30        40  

              90       100       110       120       130       140 
pF1KB6 MFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYR
             50        60        70        80        90       100  

        
pF1KB6 Y
       :
NP_001 Y
        

>>NP_001292492 (OMIM: 608572,611595) thioredoxin-like pr  (71 aa)
 initn: 487 init1: 487 opt: 487  Z-score: 697.0  bits: 133.9 E(85289): 4.4e-32
Smith-Waterman score: 487; 100.0% identity (100.0% similar) in 71 aa overlap (72-142:1-71)

              50        60        70        80        90       100 
pF1KB6 DEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNK
                                     ::::::::::::::::::::::::::::::
NP_001                               MYELYDPCTVMFFFRNKHIMIDLGTGNNNK
                                             10        20        30

             110       120       130       140  
pF1KB6 INWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
       :::::::::::::::::::::::::::::::::::::::::
NP_001 INWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
               40        50        60        70 

>>NP_001292493 (OMIM: 608572,611595) thioredoxin-like pr  (71 aa)
 initn: 487 init1: 487 opt: 487  Z-score: 697.0  bits: 133.9 E(85289): 4.4e-32
Smith-Waterman score: 487; 100.0% identity (100.0% similar) in 71 aa overlap (72-142:1-71)

              50        60        70        80        90       100 
pF1KB6 DEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNK
                                     ::::::::::::::::::::::::::::::
NP_001                               MYELYDPCTVMFFFRNKHIMIDLGTGNNNK
                                             10        20        30

             110       120       130       140  
pF1KB6 INWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
       :::::::::::::::::::::::::::::::::::::::::
NP_001 INWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
               40        50        60        70 

>>NP_003320 (OMIM: 187700) thioredoxin isoform 1 [Homo s  (105 aa)
 initn:  47 init1:  36 opt: 115  Z-score: 172.6  bits: 37.4 E(85289): 0.0071
Smith-Waterman score: 115; 23.4% identity (60.7% similar) in 107 aa overlap (4-108:1-103)

               10        20        30        40        50        60
pF1KB6 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
          :. ....    ..:. .  :..::. :.  :   :  .   ..:..:: .:  ::.:
NP_003    MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFL
                  10        20        30        40        50       

                70        80         90       100       110        
pF1KB6 -VDITEVPDFNKMYELYDPCTVMF-FFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIET
        ::. .  :  .  :.   :   : ::.. . . ... .:..:.. ....          
NP_003 EVDVDDCQDVASECEV--KCMPTFQFFKKGQKVGEFSGANKEKLEATINELV        
          60        70          80        90       100             

      120       130       140  
pF1KB6 VYRGARKGRGLVVSPKDYSTKYRY

>>NP_006532 (OMIM: 612754) glutaredoxin-3 isoform 1 [Hom  (335 aa)
 initn:  46 init1:  46 opt: 120  Z-score: 171.8  bits: 38.9 E(85289): 0.0078
Smith-Waterman score: 120; 24.4% identity (60.3% similar) in 78 aa overlap (13-90:21-97)

                       10        20        30        40        50  
pF1KB6         MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKV
                           : .. .  .   ..:..:   : : : .:.::.  .:...
NP_006 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB6 KNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEM
        . . . : .   ::. .. ::. .  : .::  ...:                      
NP_006 PQVSFVKL-EAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSG
                70        80        90       100       110         

            120       130       140                                
pF1KB6 VDIIETVYRGARKGRGLVVSPKDYSTKYRY                              
                                                                   
NP_006 SFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF
     120       130       140       150       160       170         

>>NP_001186797 (OMIM: 612754) glutaredoxin-3 isoform 1 [  (335 aa)
 initn:  46 init1:  46 opt: 120  Z-score: 171.8  bits: 38.9 E(85289): 0.0078
Smith-Waterman score: 120; 24.4% identity (60.3% similar) in 78 aa overlap (13-90:21-97)

                       10        20        30        40        50  
pF1KB6         MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKV
                           : .. .  .   ..:..:   : : : .:.::.  .:...
NP_001 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB6 KNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEM
        . . . : .   ::. .. ::. .  : .::  ...:                      
NP_001 PQVSFVKL-EAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSG
                70        80        90       100       110         

            120       130       140                                
pF1KB6 VDIIETVYRGARKGRGLVVSPKDYSTKYRY                              
                                                                   
NP_001 SFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF
     120       130       140       150       160       170         




142 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:31:43 2016 done: Fri Nov  4 15:31:44 2016
 Total Scan time:  4.500 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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