Result of FASTA (ccds) for pF1KB6701
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6701, 62 aa
  1>>>pF1KB6701 62 - 62 aa - 62 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1643+/-0.000778; mu= 3.7456+/- 0.047
 mean_var=145.6280+/-27.017, 0's: 0 Z-trim(114.9): 63  B-trim: 0 in 0/52
 Lambda= 0.106280
 statistics sampled from 15381 (15446) to 15381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.474), width:  16
 Scan time:  1.090

The best scores are:                                      opt bits E(32554)
CCDS76873.1 MT1G gene_id:4495|Hs108|chr16          (  62)  511 87.7   5e-19
CCDS10766.1 MT1G gene_id:4495|Hs108|chr16          (  61)  494 85.1   3e-18
CCDS32456.1 MT1F gene_id:4494|Hs108|chr16          (  61)  479 82.8 1.5e-17
CCDS10764.2 MT1E gene_id:4493|Hs108|chr16          (  61)  478 82.6 1.7e-17
CCDS10763.1 MT2A gene_id:4502|Hs108|chr16          (  61)  476 82.3   2e-17
CCDS10767.1 MT1H gene_id:4496|Hs108|chr16          (  61)  464 80.5 7.3e-17
CCDS32454.1 MT1A gene_id:4489|Hs108|chr16          (  61)  462 80.2   9e-17
CCDS10768.1 MT1X gene_id:4501|Hs108|chr16          (  61)  460 79.9 1.1e-16
CCDS10765.1 MT1B gene_id:4490|Hs108|chr16          (  61)  452 78.6 2.6e-16
CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1       (  61)  437 76.3 1.3e-15
CCDS42166.1 MT1M gene_id:4499|Hs108|chr16          (  61)  436 76.2 1.4e-15
CCDS10762.1 MT3 gene_id:4504|Hs108|chr16           (  68)  362 64.9   4e-12
CCDS42165.1 MT4 gene_id:84560|Hs108|chr16          (  62)  344 62.1 2.6e-11


>>CCDS76873.1 MT1G gene_id:4495|Hs108|chr16               (62 aa)
 initn: 511 init1: 511 opt: 511  Z-score: 455.1  bits: 87.7 E(32554): 5e-19
Smith-Waterman score: 511; 100.0% identity (100.0% similar) in 62 aa overlap (1-62:1-62)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
               10        20        30        40        50        60

         
pF1KB6 CA
       ::
CCDS76 CA
         

>>CCDS10766.1 MT1G gene_id:4495|Hs108|chr16               (61 aa)
 initn: 443 init1: 443 opt: 494  Z-score: 441.1  bits: 85.1 E(32554): 3e-18
Smith-Waterman score: 494; 98.4% identity (98.4% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDPNCSCAA-GVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
                10        20        30        40        50         

         
pF1KB6 CA
       ::
CCDS10 CA
      60 

>>CCDS32456.1 MT1F gene_id:4494|Hs108|chr16               (61 aa)
 initn: 428 init1: 428 opt: 479  Z-score: 428.6  bits: 82.8 E(32554): 1.5e-17
Smith-Waterman score: 479; 93.4% identity (98.4% similar) in 61 aa overlap (1-61:1-60)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       ::::::::: :::::::.::::::::::::::::::::::::.::::::.::::::::::
CCDS32 MDPNCSCAA-GVSCTCAGSCKCKECKCTSCKKSCCSCCPVGCSKCAQGCVCKGASEKCSC
                10        20        30        40        50         

         
pF1KB6 CA
       : 
CCDS32 CD
      60 

>>CCDS10764.2 MT1E gene_id:4493|Hs108|chr16               (61 aa)
 initn: 423 init1: 423 opt: 478  Z-score: 427.8  bits: 82.6 E(32554): 1.7e-17
Smith-Waterman score: 478; 91.9% identity (98.4% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       ::::::::..: :::::.:::::::::::::::::::::::::::::::.::::::::::
CCDS10 MDPNCSCATGG-SCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCVCKGASEKCSC
               10         20        30        40        50         

         
pF1KB6 CA
       ::
CCDS10 CA
      60 

>>CCDS10763.1 MT2A gene_id:4502|Hs108|chr16               (61 aa)
 initn: 425 init1: 425 opt: 476  Z-score: 426.2  bits: 82.3 E(32554): 2e-17
Smith-Waterman score: 476; 93.5% identity (96.8% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       ::::::::: : :::::.:::::::::::::::::::::::::::::::::::::.::::
CCDS10 MDPNCSCAA-GDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSC
                10        20        30        40        50         

         
pF1KB6 CA
       ::
CCDS10 CA
      60 

>>CCDS10767.1 MT1H gene_id:4496|Hs108|chr16               (61 aa)
 initn: 410 init1: 410 opt: 464  Z-score: 416.2  bits: 80.5 E(32554): 7.3e-17
Smith-Waterman score: 464; 88.7% identity (96.8% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       ::::::: :.: ::.::.:::::.:::::::::::::::.::::::::::::::::::::
CCDS10 MDPNCSCEAGG-SCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCICKGASEKCSC
               10         20        30        40        50         

         
pF1KB6 CA
       ::
CCDS10 CA
      60 

>>CCDS32454.1 MT1A gene_id:4489|Hs108|chr16               (61 aa)
 initn: 407 init1: 407 opt: 462  Z-score: 414.6  bits: 80.2 E(32554): 9e-17
Smith-Waterman score: 462; 88.7% identity (98.4% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       ::::::::..: ::::..:::::::::::::::::::::..:::::::::::::::::::
CCDS32 MDPNCSCATGG-SCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCICKGASEKCSC
               10         20        30        40        50         

         
pF1KB6 CA
       ::
CCDS32 CA
      60 

>>CCDS10768.1 MT1X gene_id:4501|Hs108|chr16               (61 aa)
 initn: 401 init1: 401 opt: 460  Z-score: 412.9  bits: 79.9 E(32554): 1.1e-16
Smith-Waterman score: 460; 87.1% identity (96.8% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       :::::::. .: ::.::.:::::::::::::::::::::::::::::::::::.:.::::
CCDS10 MDPNCSCSPVG-SCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSC
               10         20        30        40        50         

         
pF1KB6 CA
       ::
CCDS10 CA
      60 

>>CCDS10765.1 MT1B gene_id:4490|Hs108|chr16               (61 aa)
 initn: 397 init1: 397 opt: 452  Z-score: 406.3  bits: 78.6 E(32554): 2.6e-16
Smith-Waterman score: 452; 83.9% identity (95.2% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       :::::::...: ::.::.:::::::::::::: ::::::::::::::::.:::.:::: :
CCDS10 MDPNCSCTTGG-SCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRC
               10         20        30        40        50         

         
pF1KB6 CA
       ::
CCDS10 CA
      60 

>>CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1            (61 aa)
 initn: 382 init1: 382 opt: 437  Z-score: 393.8  bits: 76.3 E(32554): 1.3e-15
Smith-Waterman score: 437; 87.1% identity (95.2% similar) in 62 aa overlap (1-62:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
       :::::::::.: : .::.:::::.:::::::::::::::.:::::::::: :::::::::
CCDS31 MDPNCSCAAGG-SYACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCIRKGASEKCSC
               10         20        30        40        50         

         
pF1KB6 CA
       ::
CCDS31 CA
      60 




62 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:41:28 2016 done: Fri Nov  4 15:41:28 2016
 Total Scan time:  1.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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