Result of FASTA (omim) for pF1KB6541
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6541, 361 aa
  1>>>pF1KB6541 361 - 361 aa - 361 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.6128+/-0.000417; mu= -15.6994+/- 0.026
 mean_var=516.1102+/-109.346, 0's: 0 Z-trim(124.3): 193  B-trim: 690 in 1/59
 Lambda= 0.056455
 statistics sampled from 45574 (45824) to 45574 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.537), width:  16
 Scan time: 10.080

The best scores are:                                      opt bits E(85289)
NP_036578 (OMIM: 607389) single-stranded DNA-bindi ( 361) 2635 228.6 1.7e-59
NP_001243661 (OMIM: 607389) single-stranded DNA-bi ( 369) 2609 226.5 7.7e-59
XP_016864794 (OMIM: 607389) PREDICTED: single-stra ( 357) 2504 217.9 2.8e-56
XP_016864793 (OMIM: 607389) PREDICTED: single-stra ( 365) 2478 215.8 1.2e-55
XP_016864795 (OMIM: 607389) PREDICTED: single-stra ( 328) 2364 206.5 7.2e-53
NP_001332815 (OMIM: 607389) single-stranded DNA-bi ( 336) 2338 204.3 3.2e-52
NP_001009955 (OMIM: 607390) single-stranded DNA-bi ( 361) 2233 195.8 1.3e-49
NP_001009998 (OMIM: 607391) single-stranded DNA-bi ( 363) 1966 174.1 4.4e-43
XP_006722731 (OMIM: 607391) PREDICTED: single-stra ( 413) 1918 170.2 7.3e-42
XP_016881925 (OMIM: 607391) PREDICTED: single-stra ( 496) 1918 170.3 8.3e-42
XP_016881926 (OMIM: 607391) PREDICTED: single-stra ( 385) 1878 166.9 6.6e-41
NP_060540 (OMIM: 607390) single-stranded DNA-bindi ( 368) 1851 164.7 2.9e-40
XP_016881924 (OMIM: 607391) PREDICTED: single-stra ( 507) 1845 164.4 5.2e-40
XP_016864797 (OMIM: 607389) PREDICTED: single-stra ( 257) 1822 162.2 1.2e-39
XP_016864798 (OMIM: 607389) PREDICTED: single-stra ( 257) 1822 162.2 1.2e-39
XP_016864799 (OMIM: 607389) PREDICTED: single-stra ( 257) 1822 162.2 1.2e-39
XP_016881923 (OMIM: 607391) PREDICTED: single-stra ( 518) 1830 163.1 1.2e-39
XP_016864796 (OMIM: 607389) PREDICTED: single-stra ( 327) 1752 156.6 7.2e-38
NP_001243664 (OMIM: 607389) single-stranded DNA-bi ( 331) 1752 156.6 7.3e-38
NP_001243663 (OMIM: 607389) single-stranded DNA-bi ( 339) 1726 154.5 3.2e-37
NP_001243662 (OMIM: 607389) single-stranded DNA-bi ( 341) 1620 145.9 1.3e-34
XP_016856388 (OMIM: 607390) PREDICTED: single-stra ( 251) 1506 136.5 6.5e-32
NP_001243665 (OMIM: 607389) single-stranded DNA-bi ( 298) 1481 134.5   3e-31
XP_016856387 (OMIM: 607390) PREDICTED: single-stra ( 278) 1440 131.1 2.9e-30
XP_016856386 (OMIM: 607390) PREDICTED: single-stra ( 278) 1440 131.1 2.9e-30
XP_005259847 (OMIM: 607391) PREDICTED: single-stra ( 407) 1255 116.2 1.3e-25
XP_006722728 (OMIM: 607391) PREDICTED: single-stra ( 457) 1207 112.4 2.1e-24
XP_016881921 (OMIM: 607391) PREDICTED: single-stra ( 529) 1207 112.4 2.4e-24
XP_016881920 (OMIM: 607391) PREDICTED: single-stra ( 540) 1207 112.4 2.4e-24
NP_663768 (OMIM: 607390) single-stranded DNA-bindi ( 388)  993 94.9 3.3e-19
XP_006710608 (OMIM: 607390) PREDICTED: single-stra ( 341)  929 89.6 1.1e-17
NP_116016 (OMIM: 607391) single-stranded DNA-bindi ( 385)  921 89.0 1.9e-17
XP_006722729 (OMIM: 607391) PREDICTED: single-stra ( 435)  921 89.0 2.1e-17
XP_016881922 (OMIM: 607391) PREDICTED: single-stra ( 518)  921 89.1 2.4e-17


>>NP_036578 (OMIM: 607389) single-stranded DNA-binding p  (361 aa)
 initn: 2635 init1: 2635 opt: 2635  Z-score: 1188.9  bits: 228.6 E(85289): 1.7e-59
Smith-Waterman score: 2635; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
              310       320       330       340       350       360

        
pF1KB6 V
       :
NP_036 V
        

>>NP_001243661 (OMIM: 607389) single-stranded DNA-bindin  (369 aa)
 initn: 1435 init1: 1386 opt: 2609  Z-score: 1177.4  bits: 226.5 E(85289): 7.7e-59
Smith-Waterman score: 2609; 97.8% identity (97.8% similar) in 369 aa overlap (1-361:1-369)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
              130       140       150       160       170       180

              190               200       210       220       230  
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
       ::::::::::        ::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
              310       320       330       340       350       360

            360 
pF1KB6 YSPSMTMSV
       :::::::::
NP_001 YSPSMTMSV
                

>>XP_016864794 (OMIM: 607389) PREDICTED: single-stranded  (357 aa)
 initn: 2504 init1: 2504 opt: 2504  Z-score: 1131.3  bits: 217.9 E(85289): 2.8e-56
Smith-Waterman score: 2504; 99.7% identity (100.0% similar) in 341 aa overlap (21-361:17-357)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
                           .:::::::::::::::::::::::::::::::::::::::
XP_016     MLVIPSALMYSFVLYWRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
        120       130       140       150       160       170      

              190       200       210       220       230       240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
        180       190       200       210       220       230      

              250       260       270       280       290       300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
        240       250       260       270       280       290      

              310       320       330       340       350       360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
        300       310       320       330       340       350      

        
pF1KB6 V
       :
XP_016 V
        

>>XP_016864793 (OMIM: 607389) PREDICTED: single-stranded  (365 aa)
 initn: 1304 init1: 1258 opt: 2478  Z-score: 1119.8  bits: 215.8 E(85289): 1.2e-55
Smith-Waterman score: 2478; 97.4% identity (97.7% similar) in 349 aa overlap (21-361:17-365)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
                           .:::::::::::::::::::::::::::::::::::::::
XP_016     MLVIPSALMYSFVLYWRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
        120       130       140       150       160       170      

              190               200       210       220       230  
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
       ::::::::::        ::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
        180       190       200       210       220       230      

            240       250       260       270       280       290  
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
        240       250       260       270       280       290      

            300       310       320       330       340       350  
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
        300       310       320       330       340       350      

            360 
pF1KB6 YSPSMTMSV
       :::::::::
XP_016 YSPSMTMSV
        360     

>>XP_016864795 (OMIM: 607389) PREDICTED: single-stranded  (328 aa)
 initn: 2468 init1: 2359 opt: 2364  Z-score: 1070.2  bits: 206.5 E(85289): 7.2e-53
Smith-Waterman score: 2364; 98.5% identity (99.4% similar) in 328 aa overlap (1-328:1-327)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
       ::::::::::::::::::: ::. :..:                                
XP_016 ESHHMNGSLGSGDMDSISKYSPS-MTMSV                               
              310       320                                        

>>NP_001332815 (OMIM: 607389) single-stranded DNA-bindin  (336 aa)
 initn: 2402 init1: 1386 opt: 2338  Z-score: 1058.6  bits: 204.3 E(85289): 3.2e-52
Smith-Waterman score: 2338; 96.1% identity (97.0% similar) in 336 aa overlap (1-328:1-335)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
              130       140       150       160       170       180

              190               200       210       220       230  
pF1KB6 PRGMVPLGPQ--------NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
       ::::::::::        ::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPY
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB6 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KB6 PMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSES
       ::::::::::::::::::::::::::: ::. :..:                        
NP_001 PMGGLGGMESHHMNGSLGSGDMDSISKYSPS-MTMSV                       
              310       320       330                              

            360 
pF1KB6 YSPSMTMSV

>>NP_001009955 (OMIM: 607390) single-stranded DNA-bindin  (361 aa)
 initn: 2024 init1: 1211 opt: 2233  Z-score: 1012.0  bits: 195.8 E(85289): 1.3e-49
Smith-Waterman score: 2233; 83.2% identity (94.2% similar) in 364 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       :..:::  .::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFAKGK--GSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       :::::::::::::::::::.:::::::::::::::::::::::::::::.:::: ::.::
NP_001 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
       ::::::::::: ::::::.:. ::  :::::.:::::..:::::::::::::: ::::.:
NP_001 GFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP
      120       130       140       150       160       170        

                190       200       210       220       230        
pF1KB6 PRGMVPLGP--QNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPG
       :::: :.::  ::::..:::: :.:: :.:::.:::::.:::::::..::::::::.:::
NP_001 PRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG
      180       190       200        210       220       230       

      240       250       260       270       280       290        
pF1KB6 NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLG
       .:::::::::::::::::::::::::.::.::..: :::: .: ::::::::::::::.:
NP_001 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG
       240       250       260       270       280       290       

      300       310       320        330       340       350       
pF1KB6 GMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQSESYSPSM
       ::: :::::::::::.:.. ::::::.: .:: :::::::::.:::::. ::...:::::
NP_001 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSM
       300       310       320       330       340       350       

       360 
pF1KB6 TMSV
       ::::
NP_001 TMSV
       360 

>>NP_001009998 (OMIM: 607391) single-stranded DNA-bindin  (363 aa)
 initn: 1846 init1: 1390 opt: 1966  Z-score: 894.4  bits: 174.1 E(85289): 4.4e-43
Smith-Waterman score: 1966; 73.7% identity (91.0% similar) in 365 aa overlap (1-361:1-363)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_001 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .  
NP_001 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
      60        70        80        90       100       110         

              130       140       150       160        170         
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
       ::::::::::.:::::: ::.:.:  .:.::::::::..:.:. : ::::.:::::::.:
NP_001 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB6 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
       :::::. .:::.:::.:::: :.:.:::.:.::::::   :: .:.. :::::::.:::.
NP_001 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
     180       190       200       210       220        230        

     240       250       260       270       280       290         
pF1KB6 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
       :.:::::::::::::::::.:::::..::::.:: .  : .: :::.::: .:::.....
NP_001 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
      240       250       260       270       280       290        

     300       310       320        330       340         350      
pF1KB6 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPS
       :: ::.::::::::::.. :.::. .. ::: ::::::::::.  :.::.:: ::::::.
NP_001 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
      300       310       320       330       340       350        

        360 
pF1KB6 MTMSV
       :::::
NP_001 MTMSV
      360   

>>XP_006722731 (OMIM: 607391) PREDICTED: single-stranded  (413 aa)
 initn: 1753 init1: 1390 opt: 1918  Z-score: 872.6  bits: 170.2 E(85289): 7.3e-42
Smith-Waterman score: 1918; 73.2% identity (90.5% similar) in 358 aa overlap (1-354:1-356)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_006 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .  
XP_006 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
      60        70        80        90       100       110         

              130       140       150       160        170         
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
       ::::::::::.:::::: ::.:.:  .:.::::::::..:.:. : ::::.:::::::.:
XP_006 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB6 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
       :::::. .:::.:::.:::: :.:.:::.:.::::::   :: .:.. :::::::.:::.
XP_006 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
     180       190       200       210       220        230        

     240       250       260       270       280       290         
pF1KB6 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
       :.:::::::::::::::::.:::::..::::.:: .  : .: :::.::: .:::.....
XP_006 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
      240       250       260       270       280       290        

     300       310       320        330       340         350      
pF1KB6 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPS
       :: ::.::::::::::.. :.::. .. ::: ::::::::::.  :.::.:: ::: :  
XP_006 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDC
      300       310       320       330       340       350        

        360                                                   
pF1KB6 MTMSV                                                  
                                                              
XP_006 VDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPVLARDDHERVMGRQPRASLRA
      360       370       380       390       400       410   

>>XP_016881925 (OMIM: 607391) PREDICTED: single-stranded  (496 aa)
 initn: 1753 init1: 1390 opt: 1918  Z-score: 871.6  bits: 170.3 E(85289): 8.3e-42
Smith-Waterman score: 1918; 73.2% identity (90.5% similar) in 358 aa overlap (1-354:1-356)

               10        20        30        40        50        60
pF1KB6 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
       ::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .  
XP_016 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
      60        70        80        90       100       110         

              130       140       150       160        170         
pF1KB6 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
       ::::::::::.:::::: ::.:.:  .:.::::::::..:.:. : ::::.:::::::.:
XP_016 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB6 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
       :::::. .:::.:::.:::: :.:.:::.:.::::::   :: .:.. :::::::.:::.
XP_016 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
     180       190       200       210       220        230        

     240       250       260       270       280       290         
pF1KB6 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
       :.:::::::::::::::::.:::::..::::.:: .  : .: :::.::: .:::.....
XP_016 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
      240       250       260       270       280       290        

     300       310       320        330       340         350      
pF1KB6 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPS
       :: ::.::::::::::.. :.::. .. ::: ::::::::::.  :.::.:: ::: :  
XP_016 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDC
      300       310       320       330       340       350        

        360                                                        
pF1KB6 MTMSV                                                       
                                                                   
XP_016 VDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQPLPTPHHLPLLFH
      360       370       380       390       400       410        




361 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:08:53 2016 done: Fri Nov  4 16:08:55 2016
 Total Scan time: 10.080 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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