Result of FASTA (ccds) for pF1KB6422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6422, 339 aa
  1>>>pF1KB6422 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6788+/-0.00104; mu= 13.0570+/- 0.062
 mean_var=55.8521+/-11.201, 0's: 0 Z-trim(101.4): 29  B-trim: 0 in 0/49
 Lambda= 0.171615
 statistics sampled from 6465 (6487) to 6465 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.199), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15         ( 339) 2175 547.0 7.8e-156
CCDS53931.1 RAD51 gene_id:5888|Hs108|chr15         ( 340) 1900 479.0 2.5e-135
CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15         ( 280) 1642 415.1 3.5e-116
CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22         ( 340) 1108 282.9 2.6e-76
CCDS63477.1 DMC1 gene_id:11144|Hs108|chr22         ( 285)  517 136.5 2.5e-32
CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14         ( 350)  260 72.9 4.3e-13
CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14         ( 384)  260 72.9 4.7e-13
CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14        ( 425)  260 72.9 5.2e-13
CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17        ( 328)  242 68.5 8.9e-12


>>CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15              (339 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2911.1  bits: 547.0 E(32554): 7.8e-156
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
              250       260       270       280       290       300

              310       320       330         
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       :::::::::::::::::::::::::::::::::::::::
CCDS10 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330         

>>CCDS53931.1 RAD51 gene_id:5888|Hs108|chr15              (340 aa)
 initn: 1929 init1: 1462 opt: 1900  Z-score: 2543.2  bits: 479.0 E(32554): 2.5e-135
Smith-Waterman score: 1900; 89.1% identity (92.9% similar) in 340 aa overlap (1-339:1-340)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQR-RSEIIQITTGSKELDKLLQGGIET
       :::::::::::::::.:. ... .  ...   .   :    . . .:        :::::
CCDS53 INIKGISEAKADKILTESRSVARLECNSVILVYCTLRLSGSSDSPASASRVVGTTGGIET
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB6 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB6 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB6 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
              250       260       270       280       290       300

     300       310       320       330         
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       ::::::::::::::::::::::::::::::::::::::::
CCDS53 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
              310       320       330       340

>>CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15              (280 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 2199.4  bits: 415.1 E(32554): 3.5e-116
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
       ::::::::::::::::::                                          
CCDS53 RQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS                    
              250       260       270       280                    

>>CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22              (340 aa)
 initn: 1161 init1: 615 opt: 1108  Z-score: 1483.4  bits: 282.9 E(32554): 2.6e-76
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-339:16-340)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
                      ::::.  : :. :.. :::. :.:::. .:. :.... .. .. :
CCDS13 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
        :.::.::::.:::   : ::.  :: :: :. ..:. ...:::::.:.:::: ::::. 
CCDS13 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       .::: ::::::::::. ::: :: :::   :   :: ..::::.::::.::  .:.:...
CCDS13 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
     120       130       140       150       160       170         

              190       200        210        220       230        
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
       . . ::::: ::::....:: .:: : :. .  :.  . :::.::  ::.:.:.::::::
CCDS13 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
     180       190       200       210       220       230         

      240       250       260       270        280       290       
pF1KB6 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
       . ::..::..:  : ....:..::: .:::..:.  ::.: : :::::::::.:.:::::
CCDS13 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
     240       250       260       270        280       290        

       300       310       320       330         
pF1KB6 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       ::. ::::::: :: :::::: .:: :: :::.: :.::::.
CCDS13 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
      300       310       320       330       340

>>CCDS63477.1 DMC1 gene_id:11144|Hs108|chr22              (285 aa)
 initn: 911 init1: 497 opt: 517  Z-score: 693.9  bits: 136.5 E(32554): 2.5e-32
Smith-Waterman score: 813; 46.5% identity (67.4% similar) in 325 aa overlap (16-339:16-285)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
                      ::::.  : :. :.. :::. :.:::. .:. :.... .. .. :
CCDS63 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
        :.::.::::.:::   : ::.  :: :: :. ..:. ...:::::.:.:::: ::::. 
CCDS63 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
       .::: ::::::::::. :::   :        :: .   .:            :: ..  
CCDS63 AITEAFGEFRTGKTQLSHTL---C--------GEHQMELLDY-----------VAAKF--
     120       130          140               150                  

              190       200       210       220       230       240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
                         :.   ...           :::.::  ::.:.:.::::::. 
CCDS63 ------------------HEEAGIFK-----------LLIIDSIMALFRVDFSGRGELAE
                           160                  170       180      

              250       260       270        280       290         
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHASTTR
       ::..::..:  : ....:..::: .:::..:.  ::.: : :::::::::.:.:::::::
CCDS63 RQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHASTTR
        190       200       210        220       230       240     

     300       310       320       330         
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
       . ::::::: :: :::::: .:: :: :::.: :.::::.
CCDS63 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
         250       260       270       280     

>>CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14              (350 aa)
 initn: 356 init1: 211 opt: 260  Z-score: 348.5  bits: 72.9 E(32554): 4.3e-13
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (27-334:5-342)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
                                 .:.. :.. .   .: .  . : .        ::
CCDS97                       MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
                                     10        20        30        

               70        80        90       100          110       
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
       ... :.:   . ..:  ...     . ::  .. .::  ..   ..:  . ::. :.::.
CCDS97 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
       40        50        60        70        80        90        

       120       130       140       150       160       170       
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
         ::.::. :    ::::.:  ...   :: . :: :: ..:::::..:  :::. .:: 
CCDS97 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
      100       110       120       130       140       150        

           180          190       200       210       220       230
pF1KB6 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
          ::  .   .:   ..:   : .. :.  : . .    .. .   :.:.::.... : 
CCDS97 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
      160       170       180       190       200       210        

                240       250       260       270       280        
pF1KB6 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
       .....  :.:. :.  :::    :  ::.::.. :..:::......::    ::  .:  
CCDS97 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
      220       230       240       250       260       270        

                        290       300       310       320       330
pF1KB6 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
                         ::  .:. .::: :.   .: :   :  ::  : .  ...:.
CCDS97 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
      280       290       300       310       320       330        

                   
pF1KB6 ADGVGDAKD   
        .:.        
CCDS97 EEGLVLQGQEKP
      340       350

>>CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14              (384 aa)
 initn: 356 init1: 211 opt: 260  Z-score: 347.8  bits: 72.9 E(32554): 4.7e-13
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (27-334:5-342)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
                                 .:.. :.. .   .: .  . : .        ::
CCDS97                       MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
                                     10        20        30        

               70        80        90       100          110       
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
       ... :.:   . ..:  ...     . ::  .. .::  ..   ..:  . ::. :.::.
CCDS97 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
       40        50        60        70        80        90        

       120       130       140       150       160       170       
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
         ::.::. :    ::::.:  ...   :: . :: :: ..:::::..:  :::. .:: 
CCDS97 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
      100       110       120       130       140       150        

           180          190       200       210       220       230
pF1KB6 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
          ::  .   .:   ..:   : .. :.  : . .    .. .   :.:.::.... : 
CCDS97 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
      160       170       180       190       200       210        

                240       250       260       270       280        
pF1KB6 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
       .....  :.:. :.  :::    :  ::.::.. :..:::......::    ::  .:  
CCDS97 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
      220       230       240       250       260       270        

                        290       300       310       320       330
pF1KB6 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
                         ::  .:. .::: :.   .: :   :  ::  : .  ...:.
CCDS97 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
      280       290       300       310       320       330        

                                                     
pF1KB6 ADGVGDAKD                                     
        .:.                                          
CCDS97 EEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
      340       350       360       370       380    

>>CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14             (425 aa)
 initn: 356 init1: 211 opt: 260  Z-score: 347.0  bits: 72.9 E(32554): 5.2e-13
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (27-334:5-342)

               10        20        30        40        50        60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
                                 .:.. :.. .   .: .  . : .        ::
CCDS81                       MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
                                     10        20        30        

               70        80        90       100          110       
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
       ... :.:   . ..:  ...     . ::  .. .::  ..   ..:  . ::. :.::.
CCDS81 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
       40        50        60        70        80        90        

       120       130       140       150       160       170       
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
         ::.::. :    ::::.:  ...   :: . :: :: ..:::::..:  :::. .:: 
CCDS81 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
      100       110       120       130       140       150        

           180          190       200       210       220       230
pF1KB6 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
          ::  .   .:   ..:   : .. :.  : . .    .. .   :.:.::.... : 
CCDS81 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
      160       170       180       190       200       210        

                240       250       260       270       280        
pF1KB6 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
       .....  :.:. :.  :::    :  ::.::.. :..:::......::    ::  .:  
CCDS81 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
      220       230       240       250       260       270        

                        290       300       310       320       330
pF1KB6 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
                         ::  .:. .::: :.   .: :   :  ::  : .  ...:.
CCDS81 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
      280       290       300       310       320       330        

                                                                   
pF1KB6 ADGVGDAKD                                                   
        .:.                                                        
CCDS81 EEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMH
      340       350       360       370       380       390        

>>CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17             (328 aa)
 initn: 161 init1: 119 opt: 242  Z-score: 324.9  bits: 68.5 E(32554): 8.9e-12
Smith-Waterman score: 242; 25.0% identity (56.4% similar) in 296 aa overlap (25-307:3-283)

               10        20        30         40        50         
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKE
                               . :.  : :.. . .. :.   ..::  .. :  .:
CCDS11                       MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEE
                                     10        20        30        

      60        70          80        90       100       110       
pF1KB6 LINIKGISEAKADKILAEA--AKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGI
       . .  :.:  ::   : ..  :..  .  . :  ... ..    ..::   :::::..:.
CCDS11 VAQKCGLSY-KALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGL
       40         50        60        70        80        90       

       120       130       140       150       160       170       
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER
        :: .::. :   .::::.:  .:..        : . ...:.:..: .   ::: . . 
CCDS11 YTGEVTEIVGGPGSGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQA
       100       110       120            130       140       150  

       180          190       200       210             220        
pF1KB6 YGLS---GSDVLDNVAYARAFNTDHQTQLLYQASAMMVES------RYALLIVDSATALY
          .    ...:  .  ..::.  .. ..: .  . ....         ...:::.::. 
CCDS11 KTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV
            160       170       180       190       200       210  

      230        240       250       260       270       280       
pF1KB6 RTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPI
           .:.  :  : .:.::: :. : :   ..:.:::.::... . :.. .      :: 
CCDS11 SPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDSGRL------KPA
            220       230          240       250       260         

       290       300       310       320       330                 
pF1KB6 GGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD        
        :   . . .::. :   .:                                        
CCDS11 LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATL
           270       280       290       300       310       320   




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:48:20 2016 done: Fri Nov  4 16:48:21 2016
 Total Scan time:  2.520 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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